Biogeography of anaerobic ammonia-oxidizing (anammox) bacteria
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[1] O. Ulloa,et al. The first report of a microdiverse anammox bacteria community in waters of Colombian Pacific, a transition area between prominent oxygen minimum zones of the eastern tropical Pacific. , 2014, Environmental microbiology reports.
[2] B. Ward,et al. Organic Matter Stoichiometry, Flux, and Oxygen Control Nitrogen Loss in the Ocean , 2014, Science.
[3] A. Hoischen,et al. Shotgun metagenomic data reveals significant abundance but low diversity of “Candidatus Scalindua” marine anammox bacteria in the Arabian Sea oxygen minimum zone , 2014, Front. Microbiol..
[4] M. Klotz,et al. Deep-sea methane seep sediments in the Okhotsk Sea sustain diverse and abundant anammox bacteria. , 2014, FEMS microbiology ecology.
[5] Aijie Wang,et al. Molecular diversity and distribution of anammox community in sediments of the Dongjiang River, a drinking water source of Hong Kong , 2014, Journal of applied microbiology.
[6] R Core Team,et al. R: A language and environment for statistical computing. , 2014 .
[7] M. Trimmer,et al. Stark Contrast in Denitrification and Anammox across the Deep Norwegian Trench in the Skagerrak , 2013, Applied and Environmental Microbiology.
[8] S. Schiff,et al. Wastewater Effluent Impacts Ammonia-Oxidizing Prokaryotes of the Grand River, Canada , 2013, Applied and Environmental Microbiology.
[9] Sean R. Eddy,et al. Infernal 1.1: 100-fold faster RNA homology searches , 2013, Bioinform..
[10] J. S. Sinninghe Damsté,et al. Presence and diversity of anammox bacteria in cold hydrocarbon-rich seeps and hydrothermal vent sediments of the Guaymas Basin , 2013, Front. Microbiol..
[11] Min Liu,et al. Anaerobic ammonium oxidation (anammox) bacterial diversity, abundance, and activity in marsh sediments of the Yangtze Estuary , 2013 .
[12] P. Zheng,et al. Broad Distribution of Diverse Anaerobic Ammonium-Oxidizing Bacteria in Chinese Agricultural Soils , 2013, Applied and Environmental Microbiology.
[13] P. Zheng,et al. Enrichment of an anammox bacterial community from a flooded paddy soil. , 2013, Environmental microbiology reports.
[14] S. Tringe,et al. The metagenome of the marine anammox bacterium ‘Candidatus Scalindua profunda’ illustrates the versatility of this globally important nitrogen cycle bacterium , 2013, Environmental microbiology.
[15] N. Jiao,et al. Molecular Detection of Candidatus Scalindua pacifica and Environmental Responses of Sediment Anammox Bacterial Community in the Bohai Sea, China , 2013, PloS one.
[16] P. Han,et al. More refined diversity of anammox bacteria recovered and distribution in different ecosystems , 2013, Applied Microbiology and Biotechnology.
[17] Michael W. Hall,et al. AXIOME: automated exploration of microbial diversity , 2013, GigaScience.
[18] J. Neufeld,et al. Evaluating Primers for Profiling Anaerobic Ammonia Oxidizing Bacteria within Freshwater Environments , 2013, PloS one.
[19] Meng Li,et al. Community structure and transcript responses of anammox bacteria, AOA, and AOB in mangrove sediment microcosms amended with ammonium and nitrite , 2013, Applied Microbiology and Biotechnology.
[20] H. Cao,et al. Community Structures and Distribution of Anaerobic Ammonium Oxidizing and nirS-Encoding Nitrite-Reducing Bacteria in Surface Sediments of the South China Sea , 2013, Microbial Ecology.
[21] Kees-Jan Françoijs,et al. Metagenome Analysis of a Complex Community Reveals the Metabolic Blueprint of Anammox Bacterium “Candidatus Jettenia asiatica” , 2012, Front. Microbio..
[22] Xiaojun Ma,et al. Seasonal dynamics of ammonia/ammonium-oxidizing prokaryotes in oxic and anoxic wetland sediments of subtropical coastal mangrove , 2012, Applied Microbiology and Biotechnology.
[23] Zhengwei Zhu,et al. CD-HIT: accelerated for clustering the next-generation sequencing data , 2012, Bioinform..
[24] S. Tsuneda,et al. Temperature dependence for anammox bacteria enriched from freshwater sediments. , 2012, Journal of bioscience and bioengineering.
[25] P. Zheng,et al. Distribution and diversity of anaerobic ammonium-oxidizing bacteria in the sediments of the Qiantang River. , 2012, Environmental microbiology reports.
[26] N. Revsbech,et al. Anammox and denitrification in the oxygen minimum zone of the eastern South Pacific , 2012 .
[27] H. Stunnenberg,et al. Comparative Genomics of Two Independently Enriched “Candidatus Kuenenia Stuttgartiensis” Anammox Bacteria , 2012, Front. Microbio..
[28] M. Kuypers,et al. Benthic Nitrogen Loss in the Arabian Sea Off Pakistan , 2012, Front. Microbio..
[29] Z. Ronen,et al. Ammonia transformations and abundance of ammonia oxidizers in a clay soil underlying a manure pond. , 2012, FEMS microbiology ecology.
[30] Annika C. Mosier,et al. Global Biodiversity of Aquatic Ammonia-Oxidizing Archaea is Partitioned by Habitat , 2012, Front. Microbio..
[31] Ji-Dong Gu,et al. Dominance of Candidatus Scalindua species in anammox community revealed in soils with different duration of rice paddy cultivation in Northeast China , 2012, Applied Microbiology and Biotechnology.
[32] Jianjun Wang,et al. Molecular Detection of Novel Anammox Bacterial Clusters in the Sediments of the Shallow Freshwater Lake Taihu , 2012 .
[33] J. T. Staley,et al. Free-living and aggregate-associated Planctomycetes in the Black Sea. , 2012, FEMS microbiology ecology.
[34] P. Zheng,et al. The Influence of Intense Chemical Pollution on the Community Composition, Diversity and Abundance of Anammox Bacteria in the Jiaojiang Estuary (China) , 2012, PloS one.
[35] Noah Fierer,et al. Using network analysis to explore co-occurrence patterns in soil microbial communities , 2011, The ISME Journal.
[36] S. Tringe,et al. The metagenomic basis of anammox metabolism in Candidatus 'Brocadia fulgida'. , 2011, Biochemical Society transactions.
[37] W. Robertson,et al. Prevalence of anaerobic ammonium-oxidizing bacteria in contaminated groundwater. , 2011, Environmental science & technology.
[38] M. Li,et al. Mangrove trees affect the community structure and distribution of anammox bacteria at an anthropogenic-polluted mangrove in the Pearl River Delta reflected by 16S rRNA and hydrazine oxidoreductase (HZO) encoding gene analyses , 2011, Ecotoxicology.
[39] S. Okabe,et al. Physiological characteristics of the anaerobic ammonium-oxidizing bacterium 'Candidatus Brocadia sinica'. , 2011, Microbiology.
[40] C. Yin,et al. Anaerobic ammonia oxidation in a fertilized paddy soil , 2011, The ISME Journal.
[41] M. Vanotti,et al. Long-term preservation of anammox bacteria , 2011, Applied Microbiology and Biotechnology.
[42] M. Kuypers,et al. Intensive nitrogen loss over the Omani Shelf due to anammox coupled with dissimilatory nitrite reduction to ammonium , 2011, The ISME Journal.
[43] H. Cao,et al. Residence of Habitat-Specific Anammox Bacteria in the Deep-Sea Subsurface Sediments of the South China Sea: Analyses of Marker Gene Abundance with Physical Chemical Parameters , 2011, Microbial Ecology.
[44] J. Humbert,et al. Comparison of primer sets for the study of Planctomycetes communities in lentic freshwater ecosystems. , 2011, Environmental microbiology reports.
[45] Y. Sako,et al. Distribution and diversity of anaerobic ammonium oxidation (anammox) bacteria in the sediment of a eutrophic freshwater lake, Lake Kitaura, Japan. , 2011, Microbes and environments.
[46] M. Kuypers,et al. Microbial nitrogen cycling processes in oxygen minimum zones. , 2011, Annual review of marine science.
[47] T. Zheng,et al. Diversity and abundance of anammox bacterial community in the deep-ocean surface sediment from equatorial Pacific , 2011, Applied Microbiology and Biotechnology.
[48] B. Song,et al. Anammox Bacterial Diversity in Various Aquatic Ecosystems Based on the Detection of Hydrazine Oxidase Genes (hzoA/hzoB) , 2011, Microbial Ecology.
[49] P. Zheng,et al. New Anaerobic, Ammonium-Oxidizing Community Enriched from Peat Soil , 2010, Applied and Environmental Microbiology.
[50] M. Klotz,et al. Environmental Factors Shape Sediment Anammox Bacterial Communities in Hypernutrified Jiaozhou Bay, China , 2010, Applied and Environmental Microbiology.
[51] John Fillos,et al. Impact of inocula and growth mode on the molecular microbial ecology of anaerobic ammonia oxidation (anammox) bioreactor communities. , 2010, Water research.
[52] Hanqing Yu,et al. Identification and quantification of anammox bacteria in eight nitrogen removal reactors. , 2010, Water research.
[53] Bozhong Mu,et al. Molecular Detection of Anaerobic Ammonium-Oxidizing (Anammox) Bacteria in High-Temperature Petroleum Reservoirs , 2010, Microbial Ecology.
[54] William A. Walters,et al. QIIME allows analysis of high-throughput community sequencing data , 2010, Nature Methods.
[55] M. Aragno,et al. Molecular detection of anammox bacteria in terrestrial ecosystems: distribution and diversity , 2010, The ISME Journal.
[56] E. Casamayor,et al. Global ecological patterns in uncultured Archaea , 2010, The ISME Journal.
[57] Stefan Schouten,et al. Molecular evidence for anaerobic ammonium‐oxidizing (anammox) bacteria in continental shelf and slope sediments off northwest Africa , 2010 .
[58] M. Kuypers,et al. Water column anammox and denitrification in a temperate permanently stratified lake (Lake Rassnitzer, Germany). , 2009, Systematic and applied microbiology.
[59] C. Tobias,et al. Biogeographical distribution of diverse anaerobic ammonium oxidizing (anammox) bacteria in Cape Fear River Estuary. , 2009, Environmental microbiology.
[60] Mathieu Bastian,et al. Gephi: An Open Source Software for Exploring and Manipulating Networks , 2009, ICWSM.
[61] A. Giblin,et al. Anammox in Tidal Marsh Sediments: The Role of Salinity, Nitrogen Loading, and Marsh Vegetation , 2009 .
[62] M. Strous,et al. Presence and activity of anaerobic ammonium-oxidizing bacteria at deep-sea hydrothermal vents , 2009, The ISME Journal.
[63] C. Penton. Anaerobic Ammonium Oxidation (Anammox) , 2009 .
[64] R. Amann,et al. A microdiversity study of anammox bacteria reveals a novel Candidatus Scalindua phylotype in marine oxygen minimum zones. , 2008, Environmental microbiology.
[65] E. V. van Donselaar,et al. Enrichment and characterization of marine anammox bacteria associated with global nitrogen gas production. , 2008, Environmental microbiology.
[66] Yong-Ha Park,et al. Diversity of Ammonium-oxidizing Bacteria in a Granular Sludge Anaerobic Ammonium-oxidizing (anammox) Reactor , 2022 .
[67] M. V. van Loosdrecht,et al. The membrane bioreactor: A novel tool to grow anammox bacteria as free cells , 2008, Biotechnology and bioengineering.
[68] M. V. van Loosdrecht,et al. Response of Anaerobic Ammonium-Oxidizing Bacteria to Hydroxylamine , 2008, Applied and Environmental Microbiology.
[69] A. Boehm,et al. Shifts in the relative abundance of ammonia-oxidizing bacteria and archaea across physicochemical gradients in a subterranean estuary. , 2008, Environmental microbiology.
[70] K. Sakka,et al. Enrichment of anammox bacteria from marine environment for the construction of a bioremediation reactor , 2008, Applied Microbiology and Biotechnology.
[71] M. Strous,et al. Candidatus 'Brocadia fulgida': an autofluorescent anaerobic ammonium oxidizing bacterium. , 2008, FEMS microbiology ecology.
[72] B. Ward,et al. Anaerobic Ammonium Oxidation (Anammox) in Chesapeake Bay Sediments , 2008, Microbial Ecology.
[73] M. V. van Loosdrecht,et al. Startup of reactors for anoxic ammonium oxidation: experiences from the first full-scale anammox reactor in Rotterdam. , 2007, Water research.
[74] H. O. D. op den Camp,et al. Diversity and abundance of aerobic and anaerobic ammonium-oxidizing bacteria in freshwater sediments of the Xinyi River (China). , 2007, Environmental microbiology.
[75] R. Knight,et al. Global patterns in bacterial diversity , 2007, Proceedings of the National Academy of Sciences.
[76] D. Canfield,et al. Anaerobic ammonium-oxidizing bacteria in marine environments: widespread occurrence but low diversity. , 2007, Environmental microbiology.
[77] M. Kuypers,et al. New processes and players in the nitrogen cycle: the microbial ecology of anaerobic and archaeal ammonia oxidation , 2007, The ISME Journal.
[78] M C M van Loosdrecht,et al. Full-scale granular sludge Anammox process. , 2007, Water science and technology : a journal of the International Association on Water Pollution Research.
[79] M. Strous,et al. Candidatus "Anammoxoglobus propionicus" a new propionate oxidizing species of anaerobic ammonium oxidizing bacteria. , 2007, Systematic and applied microbiology.
[80] P. Legendre,et al. vegan : Community Ecology Package. R package version 1.8-5 , 2007 .
[81] M. Strous,et al. Adaptation of a freshwater anammox population to high salinity wastewater. , 2006, Journal of biotechnology.
[82] B. Wehrli,et al. Anaerobic ammonium oxidation in a tropical freshwater system (Lake Tanganyika). , 2006, Environmental microbiology.
[83] Dmitrij Frishman,et al. Deciphering the evolution and metabolism of an anammox bacterium from a community genome , 2006, Nature.
[84] Eoin L. Brodie,et al. Greengenes, a Chimera-Checked 16S rRNA Gene Database and Workbench Compatible with ARB , 2006, Applied and Environmental Microbiology.
[85] R. Knight,et al. UniFrac: a New Phylogenetic Method for Comparing Microbial Communities , 2005, Applied and Environmental Microbiology.
[86] R. Amann,et al. Massive nitrogen loss from the Benguela upwelling system through anaerobic ammonium oxidation. , 2005, Proceedings of the National Academy of Sciences of the United States of America.
[87] C. Lundmark. Global Ecological Patterns , 2005 .
[88] M. V. van Loosdrecht,et al. 1994-2004: 10 years of research on the anaerobic oxidation of ammonium. , 2005, Biochemical Society transactions.
[89] K. Arrigo. Marine microorganisms and global nutrient cycles , 2005, Nature.
[90] S. Tsuneda,et al. Salinity Decreases Nitrite Reductase Gene Diversity in Denitrifying Bacteria of Wastewater Treatment Systems , 2004, Applied and Environmental Microbiology.
[91] Mitchell L. Sogin,et al. Microbial Biogeography along an Estuarine Salinity Gradient: Combined Influences of Bacterial Growth and Residence Time , 2004, Applied and Environmental Microbiology.
[92] Robert C. Edgar,et al. MUSCLE: multiple sequence alignment with high accuracy and high throughput. , 2004, Nucleic acids research.
[93] J. G. Kuenen,et al. Novel principles in the microbial conversion of nitrogen compounds , 2004, Antonie van Leeuwenhoek.
[94] M. Trimmer,et al. Anaerobic Ammonium Oxidation Measured in Sediments along the Thames Estuary, United Kingdom , 2003, Applied and Environmental Microbiology.
[95] O. Gascuel,et al. A simple, fast, and accurate algorithm to estimate large phylogenies by maximum likelihood. , 2003, Systematic biology.
[96] B. Ward,et al. Diversity of ammonia monooxygenase (amoA) genes across environmental gradients in Chesapeake Bay sediments , 2003 .
[97] J. G. Kuenen,et al. Anaerobic ammonium oxidation by anammox bacteria in the Black Sea , 2003, Nature.
[98] M. Strous,et al. Candidatus "Scalindua brodae", sp. nov., Candidatus "Scalindua wagneri", sp. nov., two new species of anaerobic ammonium oxidizing bacteria. , 2003, Systematic and applied microbiology.
[99] E. Casamayor,et al. Changes in archaeal, bacterial and eukaryal assemblages along a salinity gradient by comparison of genetic fingerprinting methods in a multipond solar saltern. , 2002, Environmental microbiology.
[100] M. V. van Loosdrecht,et al. The SHARON-Anammox process for treatment of ammonium rich wastewater. , 2001, Water science and technology : a journal of the International Association on Water Pollution Research.
[101] P. Alvarez,et al. Enrichment and characterization of an anammox bacterium from a rotating biological contactor treating ammonium-rich leachate , 2001, Archives of Microbiology.
[102] J. Kuenen. Extraordinary Anaerobic Ammonium-oxidizing Bacteria , 2001 .
[103] J. G. Kuenen,et al. The CANON system (Completely Autotrophic Nitrogen-removal Over Nitrite) under ammonium limitation: interaction and competition between three groups of bacteria. , 2001, Systematic and applied microbiology.
[104] K. Schleifer,et al. Molecular evidence for genus level diversity of bacteria capable of catalyzing anaerobic ammonium oxidation. , 2000, Systematic and applied microbiology.
[105] Marc Strous,et al. Key Physiology of Anaerobic Ammonium Oxidation , 1999, Applied and Environmental Microbiology.
[106] Søren Rysgaard,et al. Effects of salinity on NH4+ adsorption capacity, nitrification, and denitrification in Danish estuarine sediments , 1999 .
[107] J. J. Heijnen,et al. The sequencing batch reactor as a powerful tool for the study of slowly growing anaerobic ammonium-oxidizing microorganisms , 1998, Applied Microbiology and Biotechnology.
[108] Manolo Gouy,et al. SEAVIEW and PHYLO_WIN: two graphic tools for sequence alignment and molecular phylogeny , 1996, Comput. Appl. Biosci..
[109] J. G. Kuenen,et al. Copyright � 1995, American Society for Microbiology Anaerobic Oxidation of Ammonium Is a Biologically Mediated Process , 1994 .
[110] J. G. Kuenen,et al. Anaerobic ammonium oxidation discovered in a denitrifying fluidized bed reactor , 1995 .
[111] H. Noller,et al. Complete nucleotide sequence of a 16S ribosomal RNA gene from Escherichia coli. , 1978, Proceedings of the National Academy of Sciences of the United States of America.