Exoproduction and Molecular Characterization of Peroxidase from Ensifer adhaerens

The increased industrial application potentials of peroxidase have led to high market demand, which has outweighed the commercially available peroxidases. Hence, the need for alternative and efficient peroxidase-producers is imperative. This study reported the process parameters for enhanced exoperoxidase production by Ensifer adhaerens NWODO-2 (accession number: KX640918) for the first time, and characterized the enzyme using molecular methods. Peroxidase production by the bacteria was optimal at 48 h, with specific productivity of 12.76 U mg−1 at pH 7, 30 ◦C and 100 rpm in an alkali lignin fermentation medium supplemented with guaiacol as the most effective inducer and ammonium sulphate as the best inorganic nitrogen source. Upon assessment of some agricultural residues as sources of carbon for the enzyme production, sawdust gave the highest peroxidase productivity (37.50 U mg−1) under solid-state fermentation. A search of the polymerase chain reaction (PCR)-amplified peroxidase gene in UniProtKB using blastx showed 70.5% similarity to an uncharacterized protein in Ensifer adhaerens but phylogenetic analysis suggests that the gene may encode a catalase-peroxidase with an estimated molecular weight of approximately 31 kDa and isoelectric point of about 11. The nucleotide sequence of the detected gene was deposited in the GenBank under the accession number MF374336. In conclusion, the ability of the strain to utilize lignocellulosic materials for peroxidase production augurs well for biotechnological application as this would greatly reduce cost, which is a major challenge in industrial enzyme production.

[1]  Feng Xu,et al.  Laccases: A Useful Group of Oxidoreductive Enzymes , 1999 .

[2]  D. Mercer,et al.  Screening actinomycetes for extracellular peroxidase activity , 1996, Applied and environmental microbiology.

[3]  A. Okoh,et al.  Maize stover as a feedstock for enhanced laccase production by two gammaproteobacteria: A solution to agroindustrial waste stockpiling , 2019, Industrial Crops and Products.

[4]  R. Urek,et al.  Enhanced production of manganese peroxidase by Phanerochaete chrysosporium , 2007 .

[5]  N. Şahin,et al.  Production and partial characterization of extracellular peroxidase produced byStreptomyces sp. F6616 isolated in Turkey , 2009, Annals of Microbiology.

[6]  M. B. Couger,et al.  Genome Sequences of the Lignin-Degrading Pseudomonas sp. Strain YS-1p and Rhizobium sp. Strain YS-1r Isolated from Decaying Wood , 2015, Genome Announcements.

[7]  Sang-Eun Oh,et al.  Cellulolytic Enzymes Production by Utilizing Agricultural Wastes Under Solid State Fermentation and its Application for Biohydrogen Production , 2014, Applied Biochemistry and Biotechnology.

[8]  Chun Shiong Chong,et al.  Production of Lignocellulolytic Enzymes by Microorganisms Isolated from Bulbitermes sp. Termite Gut in Solid-State Fermentation , 2015, Waste and Biomass Valorization.

[9]  E. Torres,et al.  Potential use of oxidative enzymes for the detoxification of organic pollutants , 2003 .

[10]  Daniel W. Smith,et al.  Optimization of extracellular fungal peroxidase production by 2 Coprinus species. , 2004, Canadian journal of microbiology.

[11]  Rajeev K Sukumaran,et al.  Utilization of rice straw for laccase production by Streptomyces psammoticus in solid-state fermentation , 2007, Journal of Industrial Microbiology & Biotechnology.

[12]  L. Viikari,et al.  The effect of culture conditions on the production of lignin modifying enzymes by the white-rot fungus Phlebia radiata , 1990 .

[13]  Subash C. B. Gopinath,et al.  Microbial Enzymes and Their Applications in Industries and Medicine , 2013, BioMed Research International.

[14]  P. Kavya,et al.  Production , Isolation and Purification of Peroxidase Using Bacillus Subtilis , 2022 .

[15]  C. Obinger,et al.  Chapter 2 Molecular Phylogeny of Heme Peroxidases , 2018 .

[16]  J. Field,et al.  Increasing ligninolytic enzyme activities in several white-rot basidiomycetes by nitrogen-sufficient media. , 1995 .

[17]  N. Jaffrezic‐Renault,et al.  Production and characterization of a bioflocculant by Proteus mirabilis TJ-1. , 2008, Bioresource technology.

[18]  E. Nevo,et al.  Effects of carbon and nitrogen sources on Pleurotus ostreatus ligninolytic enzyme activity , 2006 .

[19]  M. Mahjoubi,et al.  Pseudomonasextremorientalis BU118: a new salt-tolerant laccase-secreting bacterium with biotechnological potential in textile azo dye decolourization , 2016, 3 Biotech.

[20]  L. Harvey,et al.  The effect of agitation and aeration on the synthesis and molecular weight of gellan in batch cultures of , 2006 .

[21]  M. Takriff,et al.  Optimization of medium composition for the production of peroxidase by Bacillus sp. , 2013 .

[22]  B. Chance,et al.  ASSAY OF CATALASES AND PEROXIDASES, IN METHODS IN ENZYMOLOGY , 1995 .

[23]  N. Saitou,et al.  The neighbor-joining method: a new method for reconstructing phylogenetic trees. , 1987, Molecular biology and evolution.

[24]  T. Mester,et al.  Optimization of manganese peroxidase production by the white rot fungus Bjerkandera sp. strain BOS55 , 1997 .

[25]  T. Mester,et al.  Manganese regulation of veratryl alcohol in white rot fungi and its indirect effect on lignin peroxidase , 1995, Applied and environmental microbiology.

[26]  Alan J. McCarthy,et al.  Lignocellulose-degrading actinomycetes , 1987 .

[27]  Utkarsha U. Shedbalkar,et al.  Purification and characterization of a bacterial peroxidase from the isolated strain Pseudomonas sp. SUK1 and its application for textile dye decolorization , 2011, Annals of Microbiology.

[28]  G. Feijoo,et al.  Continuous removal of endocrine disruptors by versatile peroxidase using a two‐stage system , 2015, Biotechnology progress.

[29]  Christian Obinger,et al.  Evolution of catalases from bacteria to humans. , 2008, Antioxidants & redox signaling.

[30]  D. Sekar,et al.  Isolation and Preliminary Screening of Lignin Degrading Microbes , 2014 .

[31]  C. Gugliandolo,et al.  Detection and differentiation of Vibrio vulnificus in seawater and plankton of a coastal zone of the Mediterranean Sea. , 2006, Research in microbiology.

[32]  A. Akhavan Sepahy,et al.  Cost-Effective Production and Optimization of Alkaline Xylanase by Indigenous Bacillus mojavensis AG137 Fermented on Agricultural Waste , 2011, Enzyme research.

[33]  Olusola A. Ogunyewo,et al.  Enhanced production and physicochemical properties of thermostable crude cellulase from Sporothrix carnis grown on corn cob , 2016 .

[34]  P. Prema,et al.  Effect of inducers and process parameters on laccase production by Streptomyces psammoticus and its application in dye decolourization. , 2008, Bioresource technology.

[35]  S. Burton,et al.  Increasing the scale of peroxidase production by Streptomyces sp. strain BSII#1 , 2014, Journal of applied microbiology.

[36]  Hannah L. Woo,et al.  Draft Genome Sequence of the Lignin-Degrading Burkholderia sp. Strain LIG30, Isolated from Wet Tropical Forest Soil , 2014, Genome Announcements.

[37]  M. Fraaije,et al.  Bacterial enzymes involved in lignin degradation. , 2016, Journal of biotechnology.

[38]  Ravinder S. Bhogal,et al.  Multi-component thermostable cellulolytic enzyme production by Aspergillus niger HN-1 using pea pod waste: Appraisal of hydrolytic potential with lignocellulosic biomass , 2015 .

[39]  P. Nambisan,et al.  Optimization of Lignin Peroxidase, Manganese Peroxidase, and Lac Production from Ganoderma lucidum Under Solid State Fermentation of Pineapple Leaf , 2012 .

[40]  Michael T. Wilson,et al.  Production and partial characterization of extracellular peroxidases produced bystreptomyces avermitilis UAH30 , 1997 .

[41]  A. Okoh,et al.  Assessment of Bacillus pumilus Isolated from Fresh Water Milieu for Bioflocculant Production , 2016 .

[42]  A. Ball,et al.  Optimization of xylanase and peroxidase production from Streptomyces sp. K37 , 2014 .

[43]  B. Hinterstoisser,et al.  Increased production of laccase by the wood-degrading basidiomycete Trametes pubescens , 2002 .

[44]  S. R. Couto,et al.  Ligninolytic enzymes from corncob cultures of Phanerochaete chrysosporium under semi-solid-state conditions , 1999 .

[45]  A. Okoh,et al.  Utilization of agroindustrial wastes for the production of laccase by Achromobacter xylosoxidans HWN16 and Bordetella bronchiseptica HSO16. , 2019, Journal of environmental management.

[46]  S. Sen,et al.  Optimization of fermentation conditions for cellulase production by Bacillus subtilis CY5 and Bacillus circulans TP3 isolated from fish gut , 2007 .

[47]  N. Durán,et al.  Decolorization of Kraft effluent by free and immobilized lignin peroxidases and horseradish peroxidase , 1991, Biotechnology Letters.

[48]  A. Okoh,et al.  Peroxidase production and ligninolytic potentials of fresh water bacteria Raoultella ornithinolytica and Ensifer adhaerens , 2017, Biotechnology reports.

[49]  Rahul Singh,et al.  The emerging role for bacteria in lignin degradation and bio-product formation. , 2011, Current opinion in biotechnology.

[50]  N. Şahin,et al.  Optimization of extracellular endoxylanase, endoglucanase and peroxidase production by Streptomyces sp. F2621 isolated in Turkey , 2004, Journal of applied microbiology.

[51]  Sudhir Kumar,et al.  MEGA7: Molecular Evolutionary Genetics Analysis Version 7.0 for Bigger Datasets. , 2016, Molecular biology and evolution.

[52]  Michael T. Wilson,et al.  Optimization of extracellular lignocellulolytic enzyme production by a thermophilic actinomycete Thermomonospora fusca BD25 , 1999 .

[53]  S. Shojaosadati,et al.  Extracellular biopolymeric flocculants. Recent trends and biotechnological importance. , 2001, Biotechnology advances.

[54]  E. Kachlishvili,et al.  Effect of nitrogen source on lignocellulolytic enzyme production by white-rot basidiomycetes under solid-state cultivation , 2006 .

[55]  E. Nevo,et al.  Effect of different carbon and nitrogen sources on laccase and peroxidases production by selected Pleurotus species , 2006 .

[56]  B. Valderrama,et al.  Suicide inactivation of peroxidases and the challenge of engineering more robust enzymes. , 2002, Chemistry & biology.

[57]  M. Moo-young,et al.  Protease secretion in glucoamylase producer Aspergillus niger cultures: fungal morphology and inoculum effects , 2002 .

[58]  A. Okoh,et al.  Biochemical and molecular characterization of a novel dye-decolourizing peroxidase from Raoultella ornithinolytica OKOH-1. , 2019, International journal of biological macromolecules.

[59]  A. Rodrigues,et al.  Fungal degradation of lignin-based rigid polyurethane foams , 2012 .

[60]  Anthony I. Okoh,et al.  Classical Optimization of Cellulase and Xylanase Production by a Marine Streptomyces Species , 2016 .

[61]  C. R. Taylor,et al.  Isolation of bacterial strains able to metabolize lignin from screening of environmental samples , 2012, Journal of applied microbiology.

[62]  A. Okoh,et al.  Agrowastes utilization by Raoultella ornithinolytica for optimal extracellular peroxidase activity , 2018, Biotechnology and applied biochemistry.

[63]  M. E. Brown,et al.  Discovery and characterization of heme enzymes from unsequenced bacteria: application to microbial lignin degradation. , 2011, Journal of the American Chemical Society.

[64]  M. M. Bradford A rapid and sensitive method for the quantitation of microgram quantities of protein utilizing the principle of protein-dye binding. , 1976, Analytical biochemistry.

[65]  A. Okoh,et al.  Lignin peroxidase functionalities and prospective applications , 2016, MicrobiologyOpen.

[66]  N. Muthukumar,et al.  Production, Purification and Application of Bacterial Laccase: A Review , 2014 .

[67]  Z. Draelos A split-face evaluation of a novel pigment-lightening agent compared with no treatment and hydroquinone. , 2015, Journal of the American Academy of Dermatology.