High Throughput Isolation and Glycosylation Analysis of IgG–Variability and Heritability of the IgG Glycome in Three Isolated Human Populations*

All immunoglobulin G molecules carry N-glycans, which modulate their biological activity. Changes in N-glycosylation of IgG associate with various diseases and affect the activity of therapeutic antibodies and intravenous immunoglobulins. We have developed a novel 96-well protein G monolithic plate and used it to rapidly isolate IgG from plasma of 2298 individuals from three isolated human populations. N-glycans were released by PNGase F, labeled with 2-aminobenzamide and analyzed by hydrophilic interaction chromatography with fluorescence detection. The majority of the structural features of the IgG glycome were consistent with previous studies, but sialylation was somewhat higher than reported previously. Sialylation was particularly prominent in core fucosylated glycans containing two galactose residues and bisecting GlcNAc where median sialylation level was nearly 80%. Very high variability between individuals was observed, approximately three times higher than in the total plasma glycome. For example, neutral IgG glycans without core fucose varied between 1.3 and 19%, a difference that significantly affects the effector functions of natural antibodies, predisposing or protecting individuals from particular diseases. Heritability of IgG glycans was generally between 30 and 50%. The individual's age was associated with a significant decrease in galactose and increase of bisecting GlcNAc, whereas other functional elements of IgG glycosylation did not change much with age. Gender was not an important predictor for any IgG glycan. An important observation is that competition between glycosyltransferases, which occurs in vitro, did not appear to be relevant in vivo, indicating that the final glycan structures are not a simple result of competing enzymatic activities, but a carefully regulated outcome designed to meet the prevailing physiological needs.

[1]  A. Kobata The N-linked sugar chains of human immunoglobulin G: their unique pattern, and their functional roles. , 2008, Biochimica et biophysica acta.

[2]  M. Du,et al.  Incidence of potential glycosylation sites in immunoglobulin variable regions distinguishes between subsets of Burkitt's lymphoma and mucosa‐associated lymphoid tissue lymphoma , 2003, British journal of haematology.

[3]  R. Dwek,et al.  Variations in oligosaccharide-protein interactions in immunoglobulin G determine the site-specific glycosylation profiles and modulate the dynamic motion of the Fc oligosaccharides. , 1997, Biochemistry.

[4]  Shigeru FujiiS,et al.  Structural Heterogeneity of Sugar Chains in Immunoglobulin G , 1990 .

[5]  P. Deyn,et al.  Serum N-glycan profile shift during human ageing , 2010, Experimental Gerontology.

[6]  J. Ravetch,et al.  Fcgamma receptors: old friends and new family members. , 2006, Immunity.

[7]  D. Phillips,et al.  The three-dimensional structure of the carbohydrate within the Fc fragment of immunoglobulin G. , 1983, Biochemical Society transactions.

[8]  M. J. Bailey,et al.  Identification and quantification of N-linked oligosaccharides released from glycoproteins: an inter-laboratory study. , 2008, Glycobiology.

[9]  S. Fujii,et al.  Structural heterogeneity of sugar chains in immunoglobulin G. Conformation of immunoglobulin G molecule and substrate specificities of glycosyltransferases. , 1990, The Journal of biological chemistry.

[10]  Renate Kunert,et al.  Analysis of immunoglobulin glycosylation by LC‐ESI‐MS of glycopeptides and oligosaccharides , 2008, Proteomics.

[11]  I. Rudan,et al.  Effects of inbreeding, endogamy, genetic admixture, and outbreeding on human health: a (1001 Dalmatians) study. , 2006, Croatian medical journal.

[12]  Clarence M. Ongkudon,et al.  Versatility of polymethacrylate monoliths for chromatographic purification of biomolecules. , 2009, Journal of separation science.

[13]  T. V. van Beek,et al.  Bioaffinity chromatography on monolithic supports. , 2010, Journal of separation science.

[14]  T. Tennikova,et al.  Applications of polymethacrylate-based monoliths in high-performance liquid chromatography. , 2009, Journal of chromatography. A.

[15]  K. Fukuta,et al.  Control of Bisecting GlcNAc Addition to N-Linked Sugar Chains* , 2000, Journal of Biological Chemistry.

[16]  Raymond A Dwek,et al.  Conformational studies of oligosaccharides and glycopeptides: complementarity of NMR, X-ray crystallography, and molecular modelling. , 2002, Chemical reviews.

[17]  H. Yagi,et al.  Differential glycosylation of polyclonal IgG, IgG-Fc and IgG-Fab isolated from the sera of patients with ANCA-associated systemic vasculitis. , 2006, Biochimica et biophysica acta.

[18]  H. Schachter,et al.  Control of glycoprotein synthesis. Bovine milk UDPgalactose:N-acetylglucosamine beta-4-galactosyltransferase catalyzes the preferential transfer of galactose to the GlcNAc beta 1,2Man alpha 1,3- branch of both bisected and nonbisected complex biantennary asparagine-linked oligosaccharides. , 1985, Biochemistry.

[19]  R. Dwek,et al.  Age-related galactosylation of the N-linked oligosaccharides of human serum IgG , 1988, The Journal of experimental medicine.

[20]  J. Ravetch,et al.  Fcγ receptors as regulators of immune responses , 2008, Nature Reviews Immunology.

[21]  R. Jefferis Glycosylation of Recombinant Antibody Therapeutics , 2008, Biotechnology progress.

[22]  K. Shitara,et al.  The Absence of Fucose but Not the Presence of Galactose or Bisecting N-Acetylglucosamine of Human IgG1 Complex-type Oligosaccharides Shows the Critical Role of Enhancing Antibody-dependent Cellular Cytotoxicity* , 2003, The Journal of Biological Chemistry.

[23]  I. Rudan,et al.  Variability, heritability and environmental determinants of human plasma N-glycome. , 2009, Journal of proteome research.

[24]  A. Wolf,et al.  High concentrations of therapeutic IgG1 antibodies are needed to compensate for inhibition of antibody-dependent cellular cytotoxicity by excess endogenous immunoglobulin G. , 2006, Molecular immunology.

[25]  A. Podgornik,et al.  Fast and efficient separation of immunoglobulin M from immunoglobulin G using short monolithic columns. , 2007, Journal of chromatography. A.

[26]  A. Podgornik,et al.  Convective Interaction Media (CIM)--short layer monolithic chromatographic stationary phases. , 2005, Biotechnology annual review.

[27]  Ales Podgornik,et al.  Convective interaction media short monolithic columns: enabling chromatographic supports for the separation and purification of large biomolecules. , 2005, Journal of separation science.

[28]  J. Dennis,et al.  Adaptive Regulation at the Cell Surface by N‐Glycosylation , 2009, Traffic.

[29]  A. Podgornik,et al.  Chapter 3 - Short Monolithic Columns ­ Rigid Disks , 2003 .

[30]  J. Houwing-Duistermaat,et al.  Decreased Levels of Bisecting GlcNAc Glycoforms of IgG Are Associated with Human Longevity , 2010, PloS one.

[31]  P. Rudan,et al.  Genetic epidemiological studies of eastern Adriatic Island isolates, Croatia: objective and strategies. , 1999, Collegium antropologicum.

[32]  S. Iida,et al.  Nonfucosylated Therapeutic IgG1 Antibody Can Evade the Inhibitory Effect of Serum Immunoglobulin G on Antibody-Dependent Cellular Cytotoxicity through its High Binding to FcγRIIIa , 2006, Clinical Cancer Research.

[33]  R. Dwek,et al.  A statistical analysis of N- and O-glycan linkage conformations from crystallographic data. , 1999, Glycobiology.

[34]  Robert M. Anthony,et al.  Recapitulation of IVIG Anti-Inflammatory Activity with a Recombinant IgG Fc , 2008, Science.

[35]  T. Tennikova,et al.  Short monolithic beds: history and introduction to the field. , 2005, Journal of chromatography. A.

[36]  A. Jungbauer,et al.  Monoliths as stationary phases for separating biopolymers : Fourth-generation chromatography sorbents , 1999 .

[37]  T. Gupalova,et al.  Quantitative investigation of the affinity properties of different recombinant forms of protein G by means of high-performance monolithic chromatography. , 2002, Journal of chromatography. A.

[38]  F. Švec,et al.  Monolithic materials : preparation, properties and applications , 2003 .

[39]  Roy Jefferis,et al.  Contrasting glycosylation profiles between Fab and Fc of a human IgG protein studied by electrospray ionization mass spectrometry. , 2007, Journal of immunological methods.

[40]  F. Švec,et al.  High-Performance Membrane Chromatography. A Novel Method of Protein Separation , 1990 .

[41]  R. Jefferis,et al.  Multiple interactions of IgG with its core oligosaccharide can modulate recognition by complement and human Fc gamma receptor I and influence the synthesis of its oligosaccharide chains. , 1996, Journal of immunology.

[42]  M. T. Ragab,et al.  EFFECTS OF INBREEDINGOn a Flock of Ossimi Sheep , 1954 .

[43]  J. Ravetch,et al.  Anti-inflammatory actions of intravenous immunoglobulin. , 2008, Annual review of immunology.

[44]  A. Jungbauer,et al.  Polymethacrylate monoliths for preparative and industrial separation of biomolecular assemblies. , 2008, Journal of chromatography. A.

[45]  L. Presta,et al.  Lack of Fucose on Human IgG1 N-Linked Oligosaccharide Improves Binding to Human FcγRIII and Antibody-dependent Cellular Toxicity* , 2002, The Journal of Biological Chemistry.

[46]  Alessio Ceroni,et al.  GlycoWorkbench: a tool for the computer-assisted annotation of mass spectra of glycans. , 2008, Journal of proteome research.

[47]  G. Lauc,et al.  Glycosylation of Serum Proteins in Inflammatory Diseases , 2009, Disease markers.

[48]  Danielle Skropeta,et al.  The effect of individual N-glycans on enzyme activity. , 2009, Bioorganic & medicinal chemistry.

[49]  P. Gleeson,et al.  Control of glycoprotein synthesis. , 1983, The Journal of biological chemistry.

[50]  W. G. Hill,et al.  Heritability in the genomics era — concepts and misconceptions , 2008, Nature Reviews Genetics.

[51]  P. Hellstern,et al.  In Vitro Characterization of Solvent/Detergent‐Treated Human Plasma and of Quarantine Fresh Frozen Plasma , 1998, Vox sanguinis.

[52]  T. N. Bhat,et al.  The Protein Data Bank , 2000, Nucleic Acids Res..

[53]  M. Strlič,et al.  Depletion of high-abundance proteins from human plasma using a combination of an affinity and pseudo-affinity column. , 2009, Journal of chromatography. A.

[54]  R. Freitag,et al.  Comparison of antibody binding to immobilized group specific affinity ligands in high performance monolith affinity chromatography. , 2000, Journal of pharmaceutical and biomedical analysis.

[55]  T. Burnouf,et al.  Application of bioaffinity technology in therapeutic extracorporeal plasmapheresis and large-scale fractionation of human plasma. , 1998, Journal of chromatography. B, Biomedical sciences and applications.

[56]  A. Podgornik,et al.  Methacrylate-based short monolithic columns: enabling tools for rapid and efficient analyses of biomolecules and nanoparticles. , 2008, Journal of separation science.

[57]  L. Almasy,et al.  Multipoint quantitative-trait linkage analysis in general pedigrees. , 1998, American journal of human genetics.

[58]  Naoyuki Taniguchi,et al.  Gene expression of α1‐6 fucosyltransferase in human hepatoma tissues: A possible implication for increased fucosylation of α‐fetoprotein , 1998 .

[59]  J. Ravetch,et al.  Fcgamma receptors as regulators of immune responses. , 2008, Nature reviews. Immunology.

[60]  K. von Figura,et al.  Carbohydrate-deficient glycoprotein syndrome type 1: correction of the glycosylation defect by deprivation of glucose or supplementation of mannose , 1998, Glycoconjugate Journal.

[61]  J. Marth,et al.  Glycosylation in Cellular Mechanisms of Health and Disease , 2006, Cell.

[62]  P. Rudd,et al.  Separation of 2-aminobenzamide labeled glycans using hydrophilic interaction chromatography columns packed with 1.7 microm sorbent. , 2010, Journal of chromatography. B, Analytical technologies in the biomedical and life sciences.

[63]  R. Huber,et al.  Structural analysis of human IgG-Fc glycoforms reveals a correlation between glycosylation and structural integrity. , 2003, Journal of molecular biology.

[64]  Pauline M Rudd,et al.  The impact of glycosylation on the biological function and structure of human immunoglobulins. , 2007, Annual review of immunology.

[65]  Yoshiaki Miura,et al.  Quantitative Glycomics of Human Whole Serum Glycoproteins Based on the Standardized Protocol for Liberating N-Glycans *S , 2007, Molecular & Cellular Proteomics.

[66]  J. Marth,et al.  A recessive deletion in the GlcNAc-1-phosphotransferase gene results in peri-implantation embryonic lethality. , 1999, Glycobiology.

[67]  R. Dwek,et al.  Association of rheumatoid arthritis and primary osteoarthritis with changes in the glycosylation pattern of total serum IgG , 1985, Nature.

[68]  Samuel Moser,et al.  Modulation of therapeutic antibody effector functions by glycosylation engineering: Influence of Golgi enzyme localization domain and co‐expression of heterologous β1, 4‐N‐acetylglucosaminyltransferase III and Golgi α‐mannosidase II , 2006, Biotechnology and bioengineering.

[69]  D. Josić,et al.  Application of monoliths as supports for affinity chromatography and fast enzymatic conversion. , 2001, Journal of biochemical and biophysical methods.

[70]  H. Schachter Biosynthetic controls that determine the branching and microheterogeneity of protein-bound oligosaccharides. , 1986, Advances in experimental medicine and biology.

[71]  G. Lauc,et al.  Changes of Glycoprotein Patterns in Sera of Humans under Stress , 1996, European journal of clinical chemistry and clinical biochemistry : journal of the Forum of European Clinical Chemistry Societies.

[72]  K. Suzuki,et al.  Gene expression of alpha1-6 fucosyltransferase in human hepatoma tissues: a possible implication for increased fucosylation of alpha-fetoprotein. , 1998, Hepatology.

[73]  R. Dwek,et al.  Site-specific glycosylation of human immunoglobulin G is altered in four rheumatoid arthritis patients. , 1996, The Biochemical journal.

[74]  Pauline M Rudd,et al.  Ultra performance liquid chromatographic profiling of serum N-glycans for fast and efficient identification of cancer associated alterations in glycosylation. , 2010, Analytical chemistry.

[75]  J. Ravetch,et al.  Fcgamma receptors: old friends and new family members. , 2006, Immunity.

[76]  J. Ravetch,et al.  Anti-Inflammatory Activity of Immunoglobulin G Resulting from Fc Sialylation , 2006, Science.

[77]  I. Rudan,et al.  Effects of aging, body mass index, plasma lipid profiles, and smoking on human plasma N-glycans. , 2010, Glycobiology.

[78]  Naoyuki Taniguchi,et al.  Comparison of the methods for profiling glycoprotein glycans--HUPO Human Disease Glycomics/Proteome Initiative multi-institutional study. , 2007, Glycobiology.

[79]  Ajit Varki,et al.  Siglecs and their roles in the immune system , 2007, Nature Reviews Immunology.

[80]  P. Umaña,et al.  The carbohydrate at FcgammaRIIIa Asn-162. An element required for high affinity binding to non-fucosylated IgG glycoforms. , 2006, The Journal of biological chemistry.

[81]  A. Varki,et al.  Human uptake and incorporation of an immunogenic nonhuman dietary sialic acid , 2003, Proceedings of the National Academy of Sciences of the United States of America.

[82]  J. Weber,et al.  Effects of genome-wide heterozygosity on a range of biomedically relevant human quantitative traits. , 2007, Human molecular genetics.

[83]  D. Graham,et al.  Helicobacter pylori infection produces reversible glycosylation changes to gastric mucins , 1998, Virchows Archiv.

[84]  J. Marth,et al.  Mammalian glycosylation in immunity , 2008, Nature Reviews Immunology.

[85]  J. Ravetch,et al.  A Novel Role for the IgG Fc Glycan: The Anti-inflammatory Activity of Sialylated IgG Fcs , 2010, Journal of Clinical Immunology.