Scientific data exchange: a schema for HDF5-based storage of raw and analyzed data.

Data Exchange is a simple data model designed to interface, or `exchange', data among different instruments, and to enable sharing of data analysis tools. Data Exchange focuses on technique rather than instrument descriptions, and on provenance tracking of analysis steps and results. In this paper the successful application of the Data Exchange model to a variety of X-ray techniques, including tomography, fluorescence spectroscopy, fluorescence tomography and photon correlation spectroscopy, is described.

[1]  Xiaojing Huang,et al.  Data preparation and evaluation techniques for x-ray diffraction microscopy. , 2010, Optics express.

[2]  F. Maia The Coherent X-ray Imaging Data Bank , 2012, Nature Methods.

[3]  M. Stampanoni,et al.  Real Time Tomography at the Swiss Light Source , 2010 .

[4]  Stefan Vogt,et al.  MAPS : A set of software tools for analysis and visualization of 3D X-ray fluorescence data sets , 2003 .

[5]  J. Z. Tischler A standard format for data files , 1984 .

[6]  Erez Zadok,et al.  Unifying biological image formats with HDF5 , 2009, CACM.

[7]  Nicolas Leclercq,et al.  Development of fast, simultaneous and multi-technique scanning hard X-ray microscopy at Synchrotron Soleil. , 2013, Journal of synchrotron radiation.

[8]  B Ravel,et al.  Towards data format standardization for X-ray absorption spectroscopy. , 2012, Journal of synchrotron radiation.

[9]  Tilman Donath,et al.  Meeting Report: Workshop on Beamline Integration and Data Formatting , 2013 .

[10]  B. S. Manjunath,et al.  Biological imaging software tools , 2012, Nature Methods.

[11]  V. A. Solé,et al.  A multiplatform code for the analysis of energy-dispersive X-ray fluorescence spectra , 2007 .

[12]  G. G. Stokes "J." , 1890, The New Yale Book of Quotations.

[13]  Marco Stampanoni,et al.  A comparative study of X-ray tomographic microscopy on shales at different synchrotron facilities: ALS, APS and SLS , 2012, Journal of synchrotron radiation.

[14]  Francesco De Carlo,et al.  TomoPy: a framework for the analysis of synchrotron tomographic data , 2014, Journal of synchrotron radiation.

[15]  Mark L. Rivers,et al.  areaDetector: Software for 2-D Detectors in EPICS , 2010 .