An intrinsic efficiency measure for quantitative MRI applicable to transient and steady-state sequences

Purpose: This study proposes an efficiency metric to quantify the performance of quantitative MRI methods based on their intrinsic ability to extract information about tissue parameters. The metric can be used to both optimize and compare sequences. Here we compare steady-state sequences with transient measurement methods such as magnetic resonance fingerprinting (MRF). Theory and Methods: Under a regime of unbiased parameter estimates, an intrinsic efficiency metric $\eta$ was derived for fully-sampled experiments, which quantifies the information per square root of time that is extracted about a tissue parameter. Several steady-state and transient gradient echo based qMRI methods for joint T1 and T2 mapping were optimized to maximize $\eta$ and then compared. The impact of under-sampling was also evaluated, assuming incoherent aliasing that is treated as noise by parameter estimation. Phantom and in-vivo validations of the efficiency metric were also performed. Results: Transient methods such as MRF can be up to 3.5 times more efficient than steady-state methods, when spatial under-sampling is ignored. If incoherent aliasing is treated as noise during least-squares parameter estimation, the efficiency is reduced in proportion to the SNR of the data, with reduction factors of 5 often seen for practicable SNR levels. Phantom and in-vivo validations showed a very good agreement between the theoretical and experimentally predicted efficiency. Conclusion: This work presents and validates a metric to optimize and compare the performance of qMRI methods. Transient methods were found to be intrinsically more efficient than steady-state methods, however the effect of spatial under-sampling significantly erodes this advantage.

[1]  Yulia Shcherbakova,et al.  PLANET: An ellipse fitting approach for simultaneous T1 and T2 mapping using phase‐cycled balanced steady‐state free precession , 2017, Magnetic resonance in medicine.

[2]  Oliver Bieri,et al.  Triple‐echo steady‐state T2 relaxometry of the human brain at high to ultra‐high fields , 2014, NMR in biomedicine.

[3]  Stephen M Smith,et al.  Fast robust automated brain extraction , 2002, Human brain mapping.

[4]  Klaus Scheffler,et al.  Rapid estimation of cartilage T2 based on double echo at steady state (DESS) with 3 Tesla , 2009, Magnetic resonance in medicine.

[5]  R. Deichmann,et al.  T1 mapping with the variable flip angle technique: A simple correction for insufficient spoiling of transverse magnetization , 2018, Magnetic resonance in medicine.

[6]  Stephen M. Smith,et al.  Segmentation of brain MR images through a hidden Markov random field model and the expectation-maximization algorithm , 2001, IEEE Transactions on Medical Imaging.

[7]  T. Peters,et al.  High‐resolution T1 and T2 mapping of the brain in a clinically acceptable time with DESPOT1 and DESPOT2 , 2005, Magnetic resonance in medicine.

[8]  D. Sodickson,et al.  Optimized quantification of spin relaxation times in the hybrid state , 2017, Magnetic resonance in medicine.

[9]  Nicholas R Zwart,et al.  Spiral trajectory design: A flexible numerical algorithm and base analytical equations , 2014, Magnetic resonance in medicine.

[10]  Shaihan J. Malik,et al.  Controlled saturation magnetization transfer for reproducible multivendor variable flip angle T1 and T2 mapping , 2019, Magnetic resonance in medicine.

[11]  P. Boesiger,et al.  SENSE: Sensitivity encoding for fast MRI , 1999, Magnetic resonance in medicine.

[12]  Alain Lalande,et al.  What are normal relaxation times of tissues at 3 T? , 2017, Magnetic resonance imaging.

[13]  G H Glover,et al.  Simple analytic spiral K‐space algorithm , 1999, Magnetic resonance in medicine.

[14]  Brian A Hargreaves,et al.  Flexible and efficient optimization of quantitative sequences using automatic differentiation of Bloch simulations , 2019, Magnetic resonance in medicine.

[15]  Tobias C. Wood,et al.  Improved formulas for the two optimum VFA flip‐angles , 2015, Magnetic resonance in medicine.

[16]  Vikas Gulani,et al.  Fast 3D magnetic resonance fingerprinting for a whole‐brain coverage , 2018, Magnetic resonance in medicine.

[17]  Shaihan J. Malik,et al.  Fast quantitative MRI using controlled saturation magnetization transfer , 2018, Magnetic resonance in medicine.

[18]  Oliver Bieri,et al.  Triple echo steady‐state (TESS) relaxometry , 2014, Magnetic resonance in medicine.

[19]  Shaihan J Malik,et al.  Joint system relaxometry (JSR) and Crámer‐Rao lower bound optimization of sequence parameters: A framework for enhanced precision of DESPOT T1 and T2 estimation , 2018, Magnetic resonance in medicine.

[20]  Tobias Kober,et al.  Magnetization transfer in magnetic resonance fingerprinting , 2019, Magnetic resonance in medicine.

[21]  S. Kay Fundamentals of statistical signal processing: estimation theory , 1993 .

[22]  Volker Rasche,et al.  Golden ratio sparse MRI using tiny golden angles , 2016, Magnetic resonance in medicine.

[23]  Justin P. Haldar,et al.  Optimal Experiment Design for Magnetic Resonance Fingerprinting: Cramér-Rao Bound Meets Spin Dynamics , 2017, IEEE Transactions on Medical Imaging.

[24]  J. Duerk,et al.  Magnetic Resonance Fingerprinting , 2013, Nature.

[25]  Oliver Bieri,et al.  SSFP signal with finite RF pulses , 2009, Magnetic resonance in medicine.

[26]  D. Sodickson,et al.  Hybrid-state free precession in nuclear magnetic resonance , 2018, Communications Physics.

[27]  Nikola Stikov,et al.  Practical medical applications of quantitative MR relaxometry , 2012, Journal of magnetic resonance imaging : JMRI.

[28]  J. Hennig,et al.  Pseudo Steady‐State Free Precession for MR‐Fingerprinting , 2017, Magnetic resonance in medicine.

[29]  M. Griswold,et al.  MR fingerprinting using fast imaging with steady state precession (FISP) with spiral readout , 2015, Magnetic resonance in medicine.

[30]  P. Roemer,et al.  The NMR phased array , 1990, Magnetic resonance in medicine.

[31]  D. Peters,et al.  SUPER: A blockwise curve‐fitting method for accelerating MR parametric mapping with fast reconstruction , 2019, Magnetic resonance in medicine.

[32]  Vasily L Yarnykh,et al.  Actual flip‐angle imaging in the pulsed steady state: A method for rapid three‐dimensional mapping of the transmitted radiofrequency field , 2007, Magnetic resonance in medicine.

[33]  David M. Grant,et al.  Optimal determination of relaxation times of fourier transform nuclear magnetic resonance. Determination of spin-lattice relaxation times in chemically polarized species , 1974 .

[34]  Tom Bruijnen,et al.  Dictionary-free MR Fingerprinting reconstruction of balanced-GRE sequences , 2017, 1711.08905.

[35]  D. Gochberg,et al.  MT effects and T1 quantification in single‐slice spoiled gradient echo imaging , 2008, Magnetic resonance in medicine.