Characterization of natural peptides in Pheretima by integrating proteogenomics and label-free peptidomics
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D. Guo | Chang-liang Yao | Yun Li | Jianqing Zhang | Jiayuan Li | Wen-long Wei | Dongdong Huang | Zhen-wei Li | Jingxian Zhang | Yurong Wang | Qi-rui Bi | Xiaoxiao Luo | Shen Ji
[1] Ye Shang,et al. A novel biological sources consistency evaluation method reveals high level of biodiversity within wild natural medicine: A case study of Amynthas earthworms as “Guang Dilong” , 2022, Acta pharmaceutica Sinica. B.
[2] D. Guo,et al. Identification of Pinelliae Rhizoma and its counterfeit species based on enzymatic signature peptides from toxic proteins. , 2022, Phytomedicine : international journal of phytotherapy and phytopharmacology.
[3] Leo J. Lee,et al. IntroSpect: Motif-Guided Immunopeptidome Database Building Tool to Improve the Sensitivity of HLA I Binding Peptide Identification by Mass Spectrometry , 2022, Biomolecules.
[4] Shen Ji,et al. A rapid and simple signature peptides-based method for species authentication of three main commercial Pheretima. , 2021, Journal of proteomics.
[5] N. Tan,et al. Authentication of three main commercial Pheretima based on amino acids analysis , 2021, Amino Acids.
[6] Jian Sun,et al. Marker peptide screening and species-specific authentication of Pheretima using proteomics , 2021, Analytical and Bioanalytical Chemistry.
[7] A. Capriotti,et al. A new opening for the tricky untargeted investigation of natural and modified short peptides. , 2020, Talanta.
[8] A. Doucette,et al. Mass spectrometry profiling of low molecular weight proteins and peptides isolated by acetone precipitation. , 2020, Analytica chimica acta.
[9] J. Holst,et al. An atlas of O-linked glycosylation on peptide hormones reveals diverse biological roles , 2020, Nature Communications.
[10] Lichao Wang,et al. Development of a plasma pseudotargeted metabolomics method based on ultra-high-performance liquid chromatography–mass spectrometry , 2020, Nature Protocols.
[11] J. Armengaud,et al. Proteogenomics‐Guided Evaluation of RNA‐Seq Assembly and Protein Database Construction for Emergent Model Organisms , 2020, Proteomics.
[12] Ling Lin,et al. Identification of signature proteins of processed Bombyx batryticatus by comparative proteomic analysis. , 2020, International journal of biological macromolecules.
[13] Xiaozhe Zhang,et al. Peptides as Potential Biomarkers for Authentication of Mountain-cultivated Ginseng and Cultivated Ginseng of Different Ages Using UPLC-HRMS. , 2020, Journal of agricultural and food chemistry.
[14] E. Kristiansson,et al. Discovery of Species-unique Peptide Biomarkers of Bacterial Pathogens by Tandem Mass Spectrometry-based Proteotyping* , 2020, Molecular & Cellular Proteomics.
[15] Rui Liu,et al. A strategy for identifying species-specific peptide biomarkers in deer-hide gelatin using untargeted and targeted mass spectrometry approaches. , 2019, Analytica chimica acta.
[16] Chao Liu,et al. Comprehensive identification of peptides in tandem mass spectra using an efficient open search engine , 2018, Nature Biotechnology.
[17] Karl Mechtler,et al. CharmeRT: Boosting Peptide Identifications by Chimeric Spectra Identification and Retention Time Prediction , 2018, Journal of proteome research.
[18] Morten Nielsen,et al. MHC-I Ligand Discovery Using Targeted Database Searches of Mass Spectrometry Data: Implications for T-Cell Immunotherapies. , 2017, Journal of proteome research.
[19] Jingze Liu,et al. A Novel Toxin from Haplopelma lividum Selectively Inhibits the NaV1.8 Channel and Possesses Potent Analgesic Efficacy , 2016, Toxins.
[20] Min Yang,et al. An intelligentized strategy for endogenous small molecules characterization and quality evaluation of earthworm from two geographic origins by ultra-high performance HILIC/QTOF MSE and Progenesis QI , 2016, Analytical and Bioanalytical Chemistry.
[21] D. G. Lee,et al. A novel antimicrobial peptide, scolopendin, from Scolopendra subspinipes mutilans and its microbicidal mechanism. , 2015, Biochimie.
[22] Evgeny M. Zdobnov,et al. BUSCO: assessing genome assembly and annotation completeness with single-copy orthologs , 2015, Bioinform..
[23] Colin N. Dewey,et al. De novo transcript sequence reconstruction from RNA-seq using the Trinity platform for reference generation and analysis , 2013, Nature Protocols.
[24] J. Eng,et al. Comet: An open‐source MS/MS sequence database search tool , 2013, Proteomics.
[25] Zhengwei Zhu,et al. CD-HIT: accelerated for clustering the next-generation sequencing data , 2012, Bioinform..
[26] N. Friedman,et al. Trinity : reconstructing a full-length transcriptome without a genome from RNA-Seq data , 2016 .
[27] A. T. Dossey. Insects and their chemical weaponry: new potential for drug discovery. , 2010, Natural product reports.
[28] M. Mann,et al. MaxQuant enables high peptide identification rates, individualized p.p.b.-range mass accuracies and proteome-wide protein quantification , 2008, Nature Biotechnology.
[29] Ming Li,et al. PEAKS: powerful software for peptide de novo sequencing by tandem mass spectrometry. , 2003, Rapid communications in mass spectrometry : RCM.
[30] Costel C. Darie,et al. Developing Well-Annotated Species-Specific Protein Databases Using Comparative Proteogenomics. , 2019, Advances in experimental medicine and biology.
[31] S. Hattori,et al. Semi-Nondestructive Certification of Crocodilian Leather by LC-MS Detection of Collagen Marker Peptides. , 2019, Analytical chemistry.
[32] Yan Fu,et al. Data Analysis Strategies for Protein Modification Identification. , 2016, Methods in molecular biology.
[33] Armand G Ngounou Wetie,et al. Bottlenecks in proteomics. , 2014, Advances in experimental medicine and biology.