Robust Feature Selection Method of Radiomics for Grading Glioma

The accuracy of glioma segmentation is significantly affected by the radiomics-based prediction model for grading glioma. This study proposed a robust feature selection method that can select stable and insensitive features to the segmentation of the region of interest (ROI). The method consists of three main steps. First, stable features are selected from 360 radiomics features based on the Pearson correlation coefficient. Then, an unsupervised K-means algorithm is introduced to remove redundant features from those selected in the first step and obtain sets of K group candidate features. Finally, by using these K group feature sets to train four prediction models, the final feature set and final prediction models that have the best prediction performance are selected. Experiments were conducted on 156 glioma samples from Henan Provincial People’s Hospital between 2012 and 2016, and 11 robust features were selected. The results demonstrated excellent accuracy, sensitivity, specificity, and AUC (0.88, 0.94, 0.88, and 0.85, respectively). Compare with the performance without feature selection, a 5% increase in accuracy, sensitivity, and AUC and 13% increase in specificity were observed. The proposed feature selection method can reduce the training time by 94.04%.

[1]  P. Lambin,et al.  Decoding tumour phenotype by noninvasive imaging using a quantitative radiomics approach , 2014, Nature Communications.

[2]  Yanqi Huang,et al.  Development and Validation of a Radiomics Nomogram for Preoperative Prediction of Lymph Node Metastasis in Colorectal Cancer. , 2016, Journal of clinical oncology : official journal of the American Society of Clinical Oncology.

[3]  P. Lambin,et al.  Decoding tumour phenotype by noninvasive imaging using a quantitative radiomics approach , 2014, Nature Communications.

[4]  Vinod Kumar,et al.  A novel content-based active contour model for brain tumor segmentation. , 2012, Magnetic resonance imaging.

[5]  Ahmad Chaddad,et al.  Radiomics texture feature extraction for characterizing GBM phenotypes using GLCM , 2015, 2015 IEEE 12th International Symposium on Biomedical Imaging (ISBI).

[6]  Balaji Ganeshan,et al.  Diagnostic performance of texture analysis on MRI in grading cerebral gliomas. , 2016, European journal of radiology.

[7]  Nelly Gordillo,et al.  State of the art survey on MRI brain tumor segmentation. , 2013, Magnetic resonance imaging.

[8]  Christine H Chung,et al.  Genomics and proteomics: emerging technologies in clinical cancer research. , 2007, Critical reviews in oncology/hematology.

[9]  Bernard Fertil,et al.  Texture indexes and gray level size zone matrix. Application to cell nuclei classification , 2009 .

[10]  Jie Tian,et al.  Automated delineation of lung tumors from CT images using a single click ensemble segmentation approach , 2013, Pattern Recognit..

[11]  Paul Kinahan,et al.  Radiomics: Images Are More than Pictures, They Are Data , 2015, Radiology.

[12]  Santosh Kesari,et al.  Malignant gliomas in adults. , 2008, The New England journal of medicine.

[13]  Claus Bendtsen,et al.  X-Ray Computed Tomography: Semiautomated Volumetric Analysis of Late-Stage Lung Tumors as a Basis for Response Assessments , 2011, Int. J. Biomed. Imaging.

[14]  Belur V. Dasarathy,et al.  Image characterizations based on joint gray level-run length distributions , 1991, Pattern Recognit. Lett..

[15]  Thierry Denoeux,et al.  Selecting radiomic features from FDG-PET images for cancer treatment outcome prediction , 2016, Medical Image Anal..

[16]  Samuel H. Hawkins,et al.  Reproducibility and Prognosis of Quantitative Features Extracted from CT Images. , 2014, Translational oncology.

[17]  Insuk Sohn,et al.  Decoding Tumor Phenotypes for ALK, ROS1, and RET Fusions in Lung Adenocarcinoma Using a Radiomics Approach , 2015, Medicine.

[18]  M. Reiser,et al.  Population-Based Imaging and Radiomics: Rationale and Perspective of the German National Cohort MRI Study , 2016, Fortschritte auf dem Gebiet der Röntgenstrahlen und der bildgebenden Verfahren.

[19]  Benjamin Haibe-Kains,et al.  Radiomic feature clusters and Prognostic Signatures specific for Lung and Head & Neck cancer , 2015, Scientific Reports.

[20]  Pieter Wesseling,et al.  Glioma: experimental models and reality , 2017, Acta Neuropathologica.

[21]  Mitchel S. Berger,et al.  Current and future strategies for treatment of glioma , 2016, Neurosurgical Review.

[22]  Mary M. Galloway,et al.  Texture analysis using gray level run lengths , 1974 .

[23]  J. Bradley,et al.  Combined PET/CT image characteristics for radiotherapy tumor response in lung cancer. , 2012, Radiotherapy and oncology : journal of the European Society for Therapeutic Radiology and Oncology.

[24]  T. Niu,et al.  Rectal Cancer: Assessment of Neoadjuvant Chemoradiation Outcome based on Radiomics of Multiparametric MRI , 2016, Clinical Cancer Research.

[25]  John G. Griffiths,et al.  Least squares ellipsoid specific fitting , 2004, Geometric Modeling and Processing, 2004. Proceedings.

[26]  P. Lambin,et al.  Exploratory Study to Identify Radiomics Classifiers for Lung Cancer Histology , 2016, Front. Oncol..

[27]  Robert King,et al.  Textural features corresponding to textural properties , 1989, IEEE Trans. Syst. Man Cybern..

[28]  Andre Dekker,et al.  Radiomics: the process and the challenges. , 2012, Magnetic resonance imaging.

[29]  Yan Bai,et al.  Semiautomatic Segmentation of Glioma on Mobile Devices , 2017, Journal of healthcare engineering.

[30]  James F. Greenleaf,et al.  Use of gray value distribution of run lengths for texture analysis , 1990, Pattern Recognit. Lett..

[31]  Patrick Granton,et al.  Radiomics: extracting more information from medical images using advanced feature analysis. , 2012, European journal of cancer.

[32]  Qian Wang,et al.  Automatic lung nodule classification with radiomics approach , 2016, SPIE Medical Imaging.

[33]  J. Barnholtz-Sloan,et al.  CBTRUS statistical report: primary brain and central nervous system tumors diagnosed in the United States in 2007-2011. , 2012, Neuro-oncology.

[34]  Olivier Gevaert,et al.  Addition of MR imaging features and genetic biomarkers strengthens glioblastoma survival prediction in TCGA patients. , 2015, Journal of neuroradiology. Journal de neuroradiologie.

[35]  K. Miles,et al.  Tumour heterogeneity in non-small cell lung carcinoma assessed by CT texture analysis: a potential marker of survival , 2012, European Radiology.

[36]  Robert M. Haralick,et al.  Textural Features for Image Classification , 1973, IEEE Trans. Syst. Man Cybern..

[37]  C. K. Michael Tse,et al.  Data Clustering with Cluster Size Constraints Using a Modified K-Means Algorithm , 2014, 2014 International Conference on Cyber-Enabled Distributed Computing and Knowledge Discovery.