Leveraging word embeddings and medical entity extraction for biomedical dataset retrieval using unstructured texts
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Hongfang Liu | K. E. Ravikumar | Majid Rastegar-Mojarad | Yanshan Wang | Hongfang Liu | M. Rastegar-Mojarad | Yanshan Wang | Ravikumar Komandur-Elayavilli
[1] Erik Schultes,et al. The FAIR Guiding Principles for scientific data management and stewardship , 2016, Scientific Data.
[2] Gerard Salton,et al. Automatic Information Organization And Retrieval , 1968 .
[3] Carole A. Goble,et al. Towards BioDBcore: a community-defined information specification for biological databases , 2011, Database : the journal of biological databases and curation.
[4] João Magalhães,et al. NovaSearch at TREC 2015 Clinical Decision Support Track , 2015, TREC.
[5] Hongfang Liu,et al. MayoNLPTeam at the 2016 CLEF eHealth Information Retrieval Task 1 , 2016, CLEF.
[6] Hongfang Liu,et al. BELMiner: adapting a rule-based relation extraction system to extract biological expression language statements from bio-medical literature evidence sentences , 2017, Database J. Biol. Databases Curation.
[7] John D. Lafferty,et al. A study of smoothing methods for language models applied to Ad Hoc information retrieval , 2001, SIGIR '01.
[8] Michalis Vazirgiannis,et al. AUEB at TREC 2015: Clinical Decision Support Track , 2015, TREC.
[9] Guoqian Jiang,et al. Harmonizing bioCADDIE Metadata Schemas for Indexing Clinical Research Datasets Using Semantic Web Technologies , 2016, BMDID@ISWC.
[10] C E Lipscomb,et al. Medical Subject Headings (MeSH). , 2000, Bulletin of the Medical Library Association.
[11] Wei Hu,et al. BioSearch: a semantic search engine for Bio2RDF , 2017, Database J. Biol. Databases Curation.
[12] Edward H. Shortliffe,et al. Viewpoint: The Unified Medical Language System: Toward a Collaborative Approach for Solving Terminologic Problems , 1998, J. Am. Medical Informatics Assoc..
[13] F. Collins,et al. Policy: NIH plans to enhance reproducibility , 2014, Nature.
[14] Michael McGill,et al. Introduction to Modern Information Retrieval , 1983 .
[15] Stephen E. Robertson,et al. Okapi at TREC-3 , 1994, TREC.
[16] Richard A. Harshman,et al. Indexing by Latent Semantic Analysis , 1990, J. Am. Soc. Inf. Sci..
[17] Lucila Ohno-Machado,et al. Information retrieval for biomedical datasets: the 2016 bioCADDIE dataset retrieval challenge , 2017, Database J. Biol. Databases Curation.
[18] Hongfang Liu,et al. A Part-Of-Speech term weighting scheme for biomedical information retrieval , 2016, J. Biomed. Informatics.
[19] Betsy L. Humphreys,et al. Technical Milestone: The Unified Medical Language System: An Informatics Research Collaboration , 1998, J. Am. Medical Informatics Assoc..
[20] Cathy H. Wu,et al. UniProt: the Universal Protein knowledgebase , 2004, Nucleic Acids Res..
[21] Thomas Hofmann,et al. Probabilistic Latent Semantic Analysis , 1999, UAI.
[22] Stephen E. Robertson,et al. GatfordCentre for Interactive Systems ResearchDepartment of Information , 1996 .
[23] John D. Lafferty,et al. Model-based feedback in the language modeling approach to information retrieval , 2001, CIKM '01.
[24] Emine Yilmaz,et al. A simple and efficient sampling method for estimating AP and NDCG , 2008, SIGIR '08.
[25] Peter Li,et al. Experiences in integrated data and research object publishing using GigaDB , 2017, International Journal on Digital Libraries.
[26] Anupama E. Gururaj,et al. Finding useful data across multiple biomedical data repositories using DataMed , 2017, Nature Genetics.
[27] José Luís Oliveira,et al. BeCAS: biomedical concept recognition services and visualization , 2013, Bioinform..
[28] Christopher D. Manning,et al. Introduction to Information Retrieval , 2010, J. Assoc. Inf. Sci. Technol..
[29] Patrick Pantel,et al. From Frequency to Meaning: Vector Space Models of Semantics , 2010, J. Artif. Intell. Res..
[30] Tatiana A. Tatusova,et al. Entrez Gene: gene-centered information at NCBI , 2004, Nucleic Acids Res..
[31] Michael I. Jordan,et al. Latent Dirichlet Allocation , 2001, J. Mach. Learn. Res..
[32] D. Lindberg,et al. Unified Medical Language System , 2020, Definitions.
[33] Ellen M. Voorhees,et al. Overview of the TREC 2014 Clinical Decision Support Track , 2014, TREC.
[34] Jeffrey Dean,et al. Efficient Estimation of Word Representations in Vector Space , 2013, ICLR.
[35] W. Bruce Croft,et al. Latent concept expansion using markov random fields , 2007, SIGIR.
[36] Lucila Ohno-Machado,et al. A publicly available benchmark for biomedical dataset retrieval: the reference standard for the 2016 bioCADDIE dataset retrieval challenge , 2017, Database J. Biol. Databases Curation.
[37] Zhiyong Lu,et al. PubTator: a web-based text mining tool for assisting biocuration , 2013, Nucleic Acids Res..
[38] Philip E. Bourne,et al. The NIH Big Data to Knowledge (BD2K) initiative , 2015, J. Am. Medical Informatics Assoc..
[39] Avi Arampatzis,et al. DUTH at TREC 2015 Clinical Decision Support Track , 2015, TREC.
[40] Luca Toldo,et al. Semi-Supervised Information Retrieval System for Clinical Decision Support , 2016, TREC.
[41] W. Bruce Croft,et al. Query expansion using local and global document analysis , 1996, SIGIR '96.
[42] Zhiyong Lu,et al. PubMed and beyond: a survey of web tools for searching biomedical literature , 2011, Database J. Biol. Databases Curation.
[43] W. Bruce Croft,et al. A Markov random field model for term dependencies , 2005, SIGIR '05.
[44] Allan Hanbury,et al. TUW @ TREC Clinical Decision Support Track , 2014, TREC.
[45] M. Ashburner,et al. Gene Ontology: tool for the unification of biology , 2000, Nature Genetics.
[46] Karin M. Verspoor,et al. Multi-field query expansion is effective for biomedical dataset retrieval , 2017, Database J. Biol. Databases Curation.
[47] Nick Craswell,et al. Query Expansion with Locally-Trained Word Embeddings , 2016, ACL.
[48] Carsten Eickhoff,et al. ETH Zurich at TREC Clinical Decision Support 2016 , 2016, TREC.
[49] David Buttler,et al. Latent topic feedback for information retrieval , 2011, KDD.
[50] F. Collins,et al. NIH plans to enhance reproducibility , 2014 .
[51] Jeffrey Dean,et al. Distributed Representations of Words and Phrases and their Compositionality , 2013, NIPS.
[52] Hualong Zhang,et al. NKU at TREC 2016: Clinical Decision Support Track , 2016, TREC.
[53] Peter Cotroneo,et al. Elsevier’s approach to the bioCADDIE 2016 Dataset Retrieval Challenge , 2017, Database J. Biol. Databases Curation.
[54] Ellen M. Voorhees,et al. State-of-the-art in biomedical literature retrieval for clinical cases: a survey of the TREC 2014 CDS track , 2016, Information Retrieval Journal.
[55] Yue Zhang,et al. CCNU at TREC 2016 Clinical Decision Support Track , 2016, TREC.
[56] C. Mattingly,et al. The Comparative Toxicogenomics Database (CTD). , 2003, Environmental health perspectives.
[57] W. Bruce Croft,et al. Search Engines - Information Retrieval in Practice , 2009 .
[58] In-Chan Choi,et al. Indexing by Latent Dirichlet Allocation and an Ensemble Model , 2013, J. Assoc. Inf. Sci. Technol..