Stochastic generation of explicit pore structures by thresholding Gaussian random fields

Abstract We provide a description and computational investigation of an efficient method to stochastically generate realistic pore structures. Smolarkiewicz and Winter introduced this specific method in pores resolving simulation of Darcy flows (Smolarkiewicz and Winter, 2010 [1] ) without giving a complete formal description or analysis of the method, or indicating how to control the parameterization of the ensemble. We address both issues in this paper. The method consists of two steps. First, a realization of a correlated Gaussian field, or topography, is produced by convolving a prescribed kernel with an initial field of independent, identically distributed random variables. The intrinsic length scales of the kernel determine the correlation structure of the topography. Next, a sample pore space is generated by applying a level threshold to the Gaussian field realization: points are assigned to the void phase or the solid phase depending on whether the topography over them is above or below the threshold. Hence, the topology and geometry of the pore space depend on the form of the kernel and the level threshold. Manipulating these two user prescribed quantities allows good control of pore space observables, in particular the Minkowski functionals. Extensions of the method to generate media with multiple pore structures and preferential flow directions are also discussed. To demonstrate its usefulness, the method is used to generate a pore space with physical and hydrological properties similar to a sample of Berea sandstone.

[1]  D. Wildenschild,et al.  X-ray imaging and analysis techniques for quantifying pore-scale structure and processes in subsurface porous medium systems , 2013 .

[2]  K. Mecke,et al.  Reconstructing complex materials via effective grain shapes. , 2003, Physical review letters.

[3]  S. Torquato,et al.  Chord-length distribution function for two-phase random media. , 1993, Physical review. E, Statistical physics, plasmas, fluids, and related interdisciplinary topics.

[4]  Rudolf Hilfer,et al.  Continuum reconstruction of the pore scale microstructure for Fontainebleau sandstone , 2010 .

[5]  S. Mitra,et al.  Understanding the micro structure of Berea Sandstone by the simultaneous use of micro-computed tomography (micro-CT) and focused ion beam-scanning electron microscopy (FIB-SEM). , 2011, Micron.

[6]  H. Cramér Mathematical Methods of Statistics (PMS-9), Volume 9 , 1946 .

[7]  A. Duda,et al.  Hydraulic tortuosity in arbitrary porous media flow. , 2011, Physical review. E, Statistical, nonlinear, and soft matter physics.

[8]  Jeffrey D Hyman,et al.  Hyperbolic regions in flows through three-dimensional pore structures. , 2013, Physical review. E, Statistical, nonlinear, and soft matter physics.

[9]  Dorthe Wildenschild,et al.  Application of x-ray microtomography to environmental fluid flow problems , 2004, SPIE Optics + Photonics.

[10]  Kenneth S. Alexander,et al.  Percolation and minimal spanning forests in infinite graphs , 1995 .

[11]  Milan Sonka,et al.  Image Processing, Analysis and Machine Vision , 1993, Springer US.

[12]  Jeffrey D Hyman,et al.  Heterogeneities of flow in stochastically generated porous media. , 2012, Physical review. E, Statistical, nonlinear, and soft matter physics.

[13]  Milan Sonka,et al.  Image pre-processing , 1993 .

[14]  M. Tuller,et al.  Segmentation of X‐ray computed tomography images of porous materials: A crucial step for characterization and quantitative analysis of pore structures , 2009 .

[15]  Ali Q. Raeini,et al.  Modelling two-phase flow in porous media at the pore scale using the volume-of-fluid method , 2012, J. Comput. Phys..

[16]  Piotr K. Smolarkiewicz,et al.  Pores resolving simulation of Darcy flows , 2010, J. Comput. Phys..

[17]  Gianluca Iaccarino,et al.  DNS of buoyancy-dominated turbulent flows on a bluff body using the immersed boundary method , 2009, J. Comput. Phys..

[18]  C. Peskin Flow patterns around heart valves: A numerical method , 1972 .

[19]  Thomas S. Huang,et al.  Image processing , 1971 .

[20]  J D Hyman,et al.  Relationship between pore size and velocity probability distributions in stochastically generated porous media. , 2014, Physical review. E, Statistical, nonlinear, and soft matter physics.

[21]  L. Sirovich,et al.  Modeling a no-slip flow boundary with an external force field , 1993 .

[22]  Martin J. Blunt,et al.  Computations of Absolute Permeability on Micro-CT Images , 2012, Mathematical Geosciences.

[23]  Klaus Mecke,et al.  Additivity, Convexity, and Beyond: Applications of Minkowski Functionals in Statistical Physics , 2000 .

[24]  Piotr K. Smolarkiewicz,et al.  Building resolving large-eddy simulations and comparison with wind tunnel experiments , 2007, J. Comput. Phys..

[25]  Ali Karrech,et al.  Digital bread crumb: Creation and application , 2013 .

[26]  K. Mecke,et al.  Boolean reconstructions of complex materials: Integral geometric approach. , 2009, Physical review. E, Statistical, nonlinear, and soft matter physics.

[27]  C. Peskin Numerical analysis of blood flow in the heart , 1977 .

[28]  Joel L. Lebowitz,et al.  Percolation in strongly correlated systems , 1986 .

[29]  L. Fauci,et al.  A microscale model of bacterial and biofilm dynamics in porous media , 2000, Biotechnology and bioengineering.

[30]  Jean Bricmont,et al.  Percolation in strongly correlated systems: The massless Gaussian field , 1987 .

[31]  Pierre M. Adler,et al.  High-order moments of the phase function for real and reconstructed model porous media : a comparison , 1993 .

[32]  Amy Henderson Squilacote The Paraview Guide , 2008 .

[33]  J. H. Dunsmuir,et al.  X-Ray Microtomography: A New Tool for the Characterization of Porous Media , 1991 .

[34]  Martin J Blunt,et al.  Pore-network extraction from micro-computerized-tomography images. , 2009, Physical review. E, Statistical, nonlinear, and soft matter physics.

[35]  Daniel A. Klain A short proof of Hadwiger's characterization theorem , 1995 .

[36]  Michael Griebel,et al.  Homogenization and Numerical Simulation of Flow in Geometries with Textile Microstructures , 2010, Multiscale Model. Simul..

[37]  Stanley N. Davis Sandstones and shales , 1988 .

[38]  M. Blunt,et al.  Pore-scale imaging and modelling , 2013 .

[39]  Balasingam Muhunthan A New Three-Dimensional Modeling Technique for Studying Porous Media , 1993 .

[40]  Hilfer,et al.  Stochastic reconstruction of sandstones , 2000, Physical review. E, Statistical physics, plasmas, fluids, and related interdisciplinary topics.

[41]  Jeffrey D. Hyman,et al.  Pedotransfer functions for permeability: A computational study at pore scales , 2013 .

[42]  Timothy D. Scheibe,et al.  Simulations of reactive transport and precipitation with smoothed particle hydrodynamics , 2007, J. Comput. Phys..

[43]  S. Sheffield Gaussian free fields for mathematicians , 2003, math/0312099.

[44]  Oleg V. Vasilyev,et al.  A Brinkman penalization method for compressible flows in complex geometries , 2007, J. Comput. Phys..

[45]  Rudolf Hilfer,et al.  Local Porosity Theory and Stochastic Reconstruction for Porous Media , 2000 .

[46]  Gianluca Iaccarino,et al.  IMMERSED BOUNDARY METHODS , 2005 .

[47]  R. Hilfer Review on Scale Dependent Characterization of the Microstructure of Porous Media , 2001, cond-mat/0105458.

[48]  M. Blunt,et al.  Prediction of permeability for porous media reconstructed using multiple-point statistics. , 2004, Physical review. E, Statistical, nonlinear, and soft matter physics.

[49]  Pierre M. Adler,et al.  Flow in simulated porous media , 1990 .

[50]  J. Prusa,et al.  EULAG, a computational model for multiscale flows , 2008 .

[51]  Klaus Mecke,et al.  Integral Geometry in Statistical Physics , 1998 .

[52]  R. Verzicco,et al.  Combined Immersed-Boundary Finite-Difference Methods for Three-Dimensional Complex Flow Simulations , 2000 .

[53]  Kenneth S. Alexander,et al.  Percolation of level sets for two-dimensional random fields with lattice symmetry , 1994 .

[54]  E. C. Childs Dynamics of fluids in Porous Media , 1973 .

[55]  P. Koumoutsakos,et al.  The Fluid Mechanics of Cancer and Its Therapy , 2013 .

[56]  Z. Koza,et al.  Tortuosity-porosity relation in porous media flow. , 2008, Physical review. E, Statistical, nonlinear, and soft matter physics.

[57]  Mohammad Piri,et al.  Direct pore-level modeling of incompressible fluid flow in porous media , 2010, J. Comput. Phys..