Properties of metabolic graphs: biological organization or representation artifacts?
暂无分享,去创建一个
[1] Andreas Wagner,et al. Neutralism and selectionism: a network-based reconciliation , 2008, Nature Reviews Genetics.
[2] Zhenjun Hu,et al. Towards zoomable multidimensional maps of the cell , 2007, Nature Biotechnology.
[3] Jotun Hein,et al. Rahnuma: hypergraph-based tool for metabolic pathway prediction and network comparison , 2009, Bioinform..
[4] V. Lacroix,et al. An Introduction to Metabolic Networks and Their Structural Analysis , 2008, IEEE/ACM Transactions on Computational Biology and Bioinformatics.
[5] Giorgio Gallo,et al. Directed Hypergraphs and Applications , 1993, Discret. Appl. Math..
[6] M. Weigt,et al. On the properties of small-world network models , 1999, cond-mat/9903411.
[7] Petter Holme,et al. Model validation of simple-graph representations of metabolism , 2008, Journal of The Royal Society Interface.
[8] Masanori Arita. The metabolic world of Escherichia coli is not small. , 2004, Proceedings of the National Academy of Sciences of the United States of America.
[9] D. Fell,et al. The small world of metabolism , 2000, Nature Biotechnology.
[10] Steffen Klamt,et al. Hypergraphs and Cellular Networks , 2009, PLoS Comput. Biol..
[11] A. Barabasi,et al. Hierarchical Organization of Modularity in Metabolic Networks , 2002, Science.
[12] Jason A. Papin,et al. Reconstruction of cellular signalling networks and analysis of their properties , 2005, Nature Reviews Molecular Cell Biology.
[13] J. Nielsen,et al. Uncovering transcriptional regulation of metabolism by using metabolic network topology. , 2005, Proceedings of the National Academy of Sciences of the United States of America.
[14] Steffen Klamt,et al. Computing Knock-Out Strategies in Metabolic Networks , 2007, J. Comput. Biol..
[15] J. A. Rodríguez-Velázquez,et al. Subgraph centrality and clustering in complex hyper-networks , 2006 .
[16] Stefan Schuster,et al. Topological analysis of metabolic networks based on Petri net theory , 2003, Silico Biol..
[17] Christian V. Forst,et al. Algebraic comparison of metabolic networks, phylogenetic inference, and metabolic innovation , 2006, BMC Bioinformatics.
[18] Peter Eades,et al. Drawing Hypergraphs in the Subset Standard (Short Demo Paper) , 2000, GD.
[19] D. Fell,et al. The small world inside large metabolic networks , 2000, Proceedings of the Royal Society of London. Series B: Biological Sciences.
[20] Oliver Ebenhöh,et al. Expanding Metabolic Networks: Scopes of Compounds, Robustness, and Evolution , 2005, Journal of Molecular Evolution.
[21] A. Bonato,et al. Graphs and Hypergraphs , 2021, Clustering.
[22] Duncan J. Watts,et al. Collective dynamics of ‘small-world’ networks , 1998, Nature.
[23] R. Albert,et al. The large-scale organization of metabolic networks , 2000, Nature.
[24] Albert,et al. Emergence of scaling in random networks , 1999, Science.
[25] B. Palsson,et al. Stoichiometric flux balance models quantitatively predict growth and metabolic by-product secretion in wild-type Escherichia coli W3110 , 1994, Applied and environmental microbiology.
[26] Hiroyuki Ogata,et al. KEGG: Kyoto Encyclopedia of Genes and Genomes , 1999, Nucleic Acids Res..
[27] Tatsuya Akutsu,et al. Clustering under the line graph transformation: application to reaction network , 2004, BMC Bioinformatics.
[28] M. Lynch. The evolution of genetic networks by non-adaptive processes , 2007, Nature Reviews Genetics.
[29] Tamer Kahveci,et al. A Fast and Accurate Algorithm for Comparative Analysis of metabolic Pathways , 2009, J. Bioinform. Comput. Biol..
[30] An-Ping Zeng,et al. The Connectivity Structure, Giant Strong Component and Centrality of Metabolic Networks , 2003, Bioinform..
[31] Stefan Schuster,et al. Topological analysis of metabolic networks based on petri net theory. , 2011, Studies in health technology and informatics.
[32] Alan M. Frieze,et al. Random graphs , 2006, SODA '06.