Rates of DNA-Mediated Electron Transfer Between Metallointercalators

Ultrafast emission and absorption spectroscopies were used to measure the kinetics of DNA-mediated electron transfer reactions between metal complexes intercalated into DNA. In the presence of rhodium(III) acceptor, a substantial fraction of photoexcited donor exhibits fast oxidative quenching (>3 × 1010 per second). Transient-absorption experiments indicate that, for a series of donors, the majority of back electron transfer is also very fast (∼1010 per second). This rate is independent of the loading of acceptors on the helix, but is sensitive to sequence and π stacking. The cooperative binding of donor and acceptor is considered unlikely on the basis of structural models and DNA photocleavage studies of binding. These data show that the DNA double helix differs significantly from proteins as a bridge for electron transfer. On-Line References and Notes

[1]  N. Turro,et al.  Accelerated electron transfer between metal complexes mediated by DNA. , 1988, Science.

[2]  N. Turro,et al.  Proton Transfer Quenching of the MLCT Excited State of Ru(phen)2dppz2+ in Homogeneous Solution and Bound to DNA , 1995 .

[3]  J. Barton,et al.  ELECTRON TRANSFER BETWEEN METALLOINTERCALATORS BOUND TO DNA : SPECTRAL IDENTIFICATION OF THE TRANSIENT INTERMEDIATE , 1995 .

[4]  N. Turro,et al.  Molecular light switch for DNA : Ru(bpy)2(dppz)2+ , 1990 .

[5]  R. Dickerson,et al.  Analysis of local helix geometry in three B-DNA decamers and eight dodecamers. , 1991, Journal of molecular biology.

[6]  T. Netzel,et al.  Lifetimes, spectra, and quenching of the excited states of polypyridine complexes of iron(II), ruthenium(II), and osmium(II) , 1980 .

[7]  T. W. Welch,et al.  Electrochemical determination of nucleic acid diffusion coefficients through noncovalent association of a redox-active probe , 1995 .

[8]  H. Berg,et al.  Redox processes during photodynamic damage of DNA , 1980 .

[9]  P. Cullis,et al.  Electron conduction and trapping in DNA : an electron spin resonance study , 1990 .

[10]  N. Turro,et al.  Luminescence of ruthenium(II) polypyridyls: evidence for intercalative binding to Z-DNA. , 1991, Nucleic acids research.

[11]  Paul M. Cullis,et al.  Faraday communications. Electron conduction and trapping in DNA. An electron spin resonance study , 1990 .

[12]  B. Baguley,et al.  Electron donor properties of the antitumour drug amsacrine as studied by fluorescence quenching of DNA-bound ethidium. , 1987, Chemico-biological interactions.

[13]  J. Barton,et al.  Use of Selective Deuteration and 1H NMR in Demonstrating Major Groove Binding of .DELTA.-[Ru(phen)2dppz]2+ to d(GTCGAC)2 , 1994 .

[14]  Per Lincoln,et al.  DNA-BINDING OF DELTA- RU(PHEN)2DPPZ 2+ AND LAMBDA- RU(PHEN)2DPPZ 2+ , 1993 .

[15]  J. Barton,et al.  Electron transfer between metal complexes bound to DNA: is DNA a wire? , 1996, Metal ions in biological systems.

[16]  S. Atherton,et al.  Laser flash photolysis of DNA-intercalated ethidium bromide in the presence of methylviologen , 1987 .

[17]  G. Ullmann,et al.  Electron-Tunneling Paths in Various Electrostatic Complexes between Cytochrome c and Plastocyanin. Anisotropy of the Copper-Ligand Interactions and Dependence of the Iron-Copper Electronic Coupling on the Metalloprotein Orientation , 1995 .

[18]  J. Barton,et al.  Os(phen)2(dppz)2+: A Red-Emitting DNA Probe , 1995 .

[19]  N. Turro,et al.  DNA-mediated photoelectron transfer reactions , 1986 .

[20]  J. Barton,et al.  Transition metal complexes as probes of nucleic acids. , 1992, Methods in enzymology.

[21]  D. Crothers Calculation of binding isotherms for heterogeneous polymers , 1968, Biopolymers.

[22]  M. Ratner,et al.  Electron conduction in molecular wires. I. A scattering formalism , 1994 .

[23]  A. Harriman,et al.  ENERGY- AND ELECTRON-TRANSFER PROCESSES INVOLVING PALLADIUM PORPHYRINS BOUND TO DNA , 1994 .

[24]  M. Gardés-Albert,et al.  Intramolecular semiquinone disproportionation in DNA. Pulse radiolysis study of the one-electron reduction of daunorubicin intercalated in DNA. , 1991, Biochemistry.

[25]  J. Kypr,et al.  Conformational variability of poly(dA-dT).poly(dA-dT) and some other deoxyribonucleic acids includes a novel type of double helix. , 1985, Journal of biomolecular structure & dynamics.

[26]  M R Arkin,et al.  Long-range photoinduced electron transfer through a DNA helix. , 1993, Science.

[27]  M. Baur,et al.  Charge and excitation migration in DNA chains , 1974 .

[28]  M R Arkin,et al.  Fast photoinduced electron transfer through DNA intercalation. , 1994, Proceedings of the National Academy of Sciences of the United States of America.

[29]  John R. Miller,et al.  Superexchange-pathway model for long-distance electronic couplings , 1991 .

[30]  J. Barton,et al.  High resolution footprinting of EcoRI and distamycin with Rh(phi)2(bpy)3+, a new photofootprinting reagent. , 1989, Nucleic acids research.

[31]  P. Fromherz,et al.  Photoinduced electron transfer in DNA matrix from intercalated ethidium to condensed methylviologen , 1986 .

[32]  T. Meade,et al.  Electron Transfer through DNA: Site‐Specific Modification of Duplex DNA with Ruthenium Donors and Acceptors , 1995 .

[33]  N. Turro,et al.  Characterization of dipyridophenazine complexes of ruthenium(II): the light switch effect as a function of nucleic acid sequence and conformation. , 1992, Biochemistry.

[34]  J. Barton,et al.  NMR evidence for specific intercalation of .DELTA.-rh(phen)2.phi.3+ in [d(GTCGAC)2] , 1993 .

[35]  A. Szent-Györgyi,et al.  ON THE ELECTRON DONATING PROPERTIES OF CARCINOGENS. , 1960, Proceedings of the National Academy of Sciences of the United States of America.

[36]  D. Crothers,et al.  Kinetic and hydrodynamic studies of the complex of proflavine with poly A·poly U , 1971, Biopolymers.

[37]  S. Jovanovic,et al.  One-electron redox potentials of purines and pyrimidines , 1986 .

[38]  R S Snart,et al.  The electrical properties and stability of DNA to UV radiation and aromatic hydrocarbons , 1973, Biopolymers.

[39]  J. Barton,et al.  Sequence-specific recognition of DNA by phenanthrenequinone diimine complexes of rhodium(III): importance of steric and van der Waals interactions. , 1994, Biochemistry.

[40]  C. Hunter,et al.  Sequence-dependent DNA structure. The role of base stacking interactions. , 1993, Journal of molecular biology.

[41]  A. Harriman,et al.  Dynamics of electron transfer between intercalated polycyclic molecules: effect of interspersed bases , 1992 .

[42]  H. Ringsdorf,et al.  Charge-transfer absorption in doped columnar liquid crystals , 1992 .

[43]  L. P. Candeias,et al.  One-electron-reduction potentials of pyrimidine bases, nucleosides, and nucleotides in aqueous solution. Consequences for DNA redox chemistry , 1992 .

[44]  T. Meade,et al.  Electron transfer in DNA: Predictions of exponential growth and decay of coupling with donor-acceptor distance , 1993 .

[45]  Harry B. Gray,et al.  Electron Tunneling in Proteins: Coupling Through a β Strand , 1995 .

[46]  R. Marcus,et al.  Electron transfers in chemistry and biology , 1985 .

[47]  M. Bjerrum,et al.  Electron-Tunneling Pathways in Cytochrome c , 1992, Science.

[48]  J. Barton,et al.  Metals and DNA: molecular left-handed complements , 1986, Science.

[49]  Anthony K. Felts,et al.  Multilevel Redfield Treatment of Bridge-Mediated Long-Range Electron Transfer: A Mechanism for Anomalous Distance Dependence , 1995 .

[50]  J. Barton,et al.  Enantiospecific palindromic recognition of 5'-d(CTCTAGAG)-3' by a novel rhodium intercalator: analogies to a DNA-binding protein , 1993 .

[51]  D. Whillans Studies of electron migration in DNA in aqueous solution using intercalating dyes. , 1975, Biochimica et biophysica acta.

[52]  J. Barton,et al.  DNA photocleavage by phenanthrenequinone diimine complexes of rhodium(III): shape-selective recognition and reaction , 1992 .

[53]  S. Boxer Mechanisms of long-distance electron transfer in proteins: lessons from photosynthetic reaction centers. , 1990, Annual review of biophysics and biophysical chemistry.

[54]  Michael Hanack,et al.  The Effect of Structural Modifications on Charge Migration in Mesomorphic Phthalocyanines , 1994 .

[55]  B. Hoffman,et al.  Local moment scattering in the one-dimensional molecular conductors CuxNi1-x(phthalocyaninato)I , 1991 .

[56]  M. Ratner,et al.  Molecular electronics: Disordered molecular wires , 1994 .

[57]  J. Barton,et al.  Sequence-selective DNA recognition and photocleavage: a comparison of enantiomers of Rh(en)2phi3+. , 1995, Biochemistry.

[58]  N. Turro,et al.  Luminescence Quenching in Supramolecular Systems: A Comparison of DNA- and SDS Micelle-Mediated Photoinduced Electron Transfer between Metal Complexes , 1996 .

[59]  L. P. Candeias,et al.  Electron transfer in di(deoxy)nucleoside phosphates in aqueous solution: rapid migration of oxidative damage (via adenine) to guanine , 1993 .

[60]  H. Mcconnell,et al.  Intramolecular Charge Transfer in Aromatic Free Radicals , 1961 .

[61]  T. Tullius,et al.  Targeting of nucleic acids by iron complexes. , 1996, Metal ions in biological systems.

[62]  Kurt Warncke,et al.  Nature of biological electron transfer , 1992, Nature.

[63]  M. Rodgers,et al.  Photoinduced charge separation in a micelle-induced charge-transfer complex between methylviologen and ethidium ions: a picosecond absorption spectroscopy study , 1987 .

[64]  J. Barton,et al.  Sequence-specific DNA binding by a rhodium complex: recognition based on sequence-dependent twistability. , 1995, Biochemistry.

[65]  E. Amouyal,et al.  Ru(bipy)2(dipyridophenazine)2+: a complex with a long range directed charge transfer excited state , 1985 .

[66]  N. Hush,et al.  Ionization potentials and donor properties of nucleic acid bases and related compounds , 1975 .

[67]  J. Barton,et al.  Os(phen)2dppz2+ in Photoinduced DNA-Mediated Electron Transfer Reactions , 1996 .

[68]  John R. Miller,et al.  Intramolecular Long-Distance Electron Transfer in Organic Molecules , 1988, Science.

[69]  L. A. Lipscomb,et al.  Structure of DNA-porphyrin complex. , 1996, Biochemistry.

[70]  J. Barton,et al.  1H-NMR of Rh(NH3)4phi3+ Bound to d(TGGCCA)2: Classical Intercalation by a Nonclassical Octahedral Metallointercalator , 1994 .

[71]  M. Ratner,et al.  Electron conduction in molecular wires. II. Application to scanning tunneling microscopy , 1994 .