Transcript profiling reveals complex auxin signalling pathway and transcription regulation involved in dedifferentiation and redifferentiation during somatic embryogenesis in cotton
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[1] Xiyan Yang,et al. GhHmgB3 deficiency deregulates proliferation and differentiation of cells during somatic embryogenesis in cotton. , 2011, Plant biotechnology journal.
[2] P. Benfey,et al. Transcriptional Regulation of ROS Controls Transition from Proliferation to Differentiation in the Root , 2010, Cell.
[3] Chuan-Xi Zhang,et al. De novo characterization of a whitefly transcriptome and analysis of its gene expression during development , 2010, BMC Genomics.
[4] Zongli Zheng,et al. Titration-free massively parallel pyrosequencing using trace amounts of starting material , 2010, Nucleic acids research.
[5] Xiyan Yang,et al. Multiple shoots induction in wild cotton (Gossypium bickii) through organogenesis and the analysis of genetic homogeneity of the regenerated plants , 2010, Biologia.
[6] M. Schmid,et al. MONOPTEROS controls embryonic root initiation by regulating a mobile transcription factor , 2010, Nature.
[7] G. Malerba,et al. Characterization of Transcriptional Complexity during Berry Development in Vitis vinifera Using RNA-Seq1[W] , 2010, Plant Physiology.
[8] Xiyan Yang,et al. Regulation of Somatic Embryogenesis in Higher Plants , 2010 .
[9] Yan-min Zhang,et al. Expression of auxin-related genes during dedifferentiation of mature embryo in wheat. , 2009 .
[10] Chao-jun Zhang,et al. Differential gene expression of cotton cultivar CCRI24 during somatic embryogenesis. , 2009, Journal of plant physiology.
[11] Ryan D. Morin,et al. Next-generation tag sequencing for cancer gene expression profiling. , 2009, Genome research.
[12] S. O'Neill,et al. Auxin-induced WUS expression is essential for embryonic stem cell renewal during somatic embryogenesis in Arabidopsis , 2009, The Plant journal : for cell and molecular biology.
[13] Catalin C. Barbacioru,et al. mRNA-Seq whole-transcriptome analysis of a single cell , 2009, Nature Methods.
[14] M. Filipecki,et al. Characterization of CsSEF1 gene encoding putative CCCH-type zinc finger protein expressed during cucumber somatic embryogenesis. , 2009, Journal of plant physiology.
[15] N. Chua,et al. Overexpression of PGA37/MYB118 and MYB115 promotes vegetative-to-embryonic transition in Arabidopsis , 2009, Cell Research.
[16] J. Harada,et al. LECs go crazy in embryo development. , 2008, Trends in plant science.
[17] Lili Tu,et al. Analysis of genes differentially expressed during initial cellular dedifferentiation in cotton , 2008 .
[18] Lili Tu,et al. Expression profile analysis of genes involved in cell wall regeneration during protoplast culture in cotton by suppression subtractive hybridization and macroarray , 2008, Journal of experimental botany.
[19] M. Stephens,et al. RNA-seq: an assessment of technical reproducibility and comparison with gene expression arrays. , 2008, Genome research.
[20] T. Yoshizumi,et al. DFL1, an auxin-responsive GH3 gene homologue, negatively regulates shoot cell elongation and lateral root formation, and positively regulates the light response of hypocotyl length. , 2008, The Plant journal : for cell and molecular biology.
[21] G. Bryan,et al. Molecular regulation of somatic embryogenesis in potato: an auxin led perspective , 2008, Plant Molecular Biology.
[22] R. Rose,et al. The Transcription Factor MtSERF1 of the ERF Subfamily Identified by Transcriptional Profiling Is Required for Somatic Embryogenesis Induced by Auxin Plus Cytokinin in Medicago truncatula1[W][OA] , 2008, Plant Physiology.
[23] John Z. Yu,et al. Toward Sequencing Cotton (Gossypium) Genomes , 2007, Plant Physiology.
[24] M. Scott Marshall,et al. A semantic web approach applied to integrative bioinformatics experimentation: a biological use case with genomics data , 2007, Bioinform..
[25] W. Lukowitz,et al. Embryonic patterning in Arabidopsis thaliana. , 2007, Annual review of cell and developmental biology.
[26] Xin Chen,et al. PlantTFDB: a comprehensive plant transcription factor database , 2007, Nucleic Acids Res..
[27] Shuangxia Jin,et al. Chromatin reorganization and endogenous auxin/cytokinin dynamic activity during somatic embryogenesis of cultured cotton cell , 2007, Plant Cell, Tissue and Organ Culture.
[28] M. Gaj,et al. Histological analysis of direct somatic embryogenesis in Arabidopsis thaliana (L.) Heynh , 2007, Planta.
[29] Yi-chang Jia,et al. Characterization of ZNF23, a KRAB-containing protein that is downregulated in human cancers and inhibits cell cycle progression. , 2007, Experimental cell research.
[30] Shuangxia Jin,et al. Identification of a novel elite genotype for in vitro culture and genetic transformation of cotton , 2006, Biologia Plantarum.
[31] L. Puskás,et al. Identification and characterization of genes associated with the induction of embryogenic competence in leaf-protoplast-derived alfalfa cells. , 2006, Biochimica et biophysica acta.
[32] V. Loyola-Vargas,et al. Embryo production through somatic embryogenesis can be used to study cell differentiation in plants , 2006, Plant Cell, Tissue and Organ Culture.
[33] N. L. Innes. Global Status of Commercialized Biotech/GM Crops: 2005. ISAAA Briefs No. 34. By C. James. Ithaca, NY, USA: ISAAA (2005), pp. 46, US$50.00. ISBN 1-892456-38-9 , 2006, Experimental Agriculture.
[34] Lili Tu,et al. An Improved Simple Protocol for Isolation of High Quality RNA from Gossypium spp. Suitable for cDNA Library Construction , 2005 .
[35] V. Jiménez. Involvement of Plant Hormones and Plant Growth Regulators on in vitro Somatic Embryogenesis , 2005, Plant Growth Regulation.
[36] Shibo Zhang,et al. Leafy cotyledon genes are essential for induction of somatic embryogenesis of Arabidopsis , 2005, Planta.
[37] Ottoline Leyser,et al. The Arabidopsis F-box protein TIR1 is an auxin receptor , 2005, Nature.
[38] Walter P. Suza,et al. Characterization of an Arabidopsis Enzyme Family That Conjugates Amino Acids to Indole-3-Acetic Acidw⃞ , 2005, The Plant Cell Online.
[39] M. Lagacé,et al. Characterization of a WRKY transcription factor expressed in late torpedo-stage embryos of Solanum chacoense , 2004, Planta.
[40] M. Matsui,et al. ydk1-D, an auxin-responsive GH3 mutant that is involved in hypocotyl and root elongation. , 2004, The Plant journal : for cell and molecular biology.
[41] Michael Sauer,et al. Efflux-dependent auxin gradients establish the apical–basal axis of Arabidopsis , 2003, Nature.
[42] A. Müller,et al. The Nitrilase ZmNIT2 Converts Indole-3-Acetonitrile to Indole-3-Acetic Acid1 , 2003, Plant Physiology.
[43] D. Dudits,et al. Transition of somatic plant cells to an embryogenic state , 2003, Plant Cell, Tissue and Organ Culture.
[44] J. Meurer,et al. Efficient regeneration from cotyledon protoplasts in Arabidopsis thaliana , 2003, Protoplasma.
[45] F. Thibaud-Nissen,et al. Clustering of Microarray Data Reveals Transcript Patterns Associated with Somatic Embryogenesis in Soybean1,212 , 2003, Plant Physiology.
[46] R. Bhatnagar,et al. High-frequency somatic embryo production and maturation into normal plants in cotton (Gossypium hirsutum) through metabolic stress , 2003, Plant Cell Reports.
[47] V. Sharma,et al. Ectopic Expression of BABY BOOM Triggers a Conversion from Vegetative to Embryonic Growth Article, publication date, and citation information can be found at www.plantcell.org/cgi/doi/10.1105/tpc.001941. , 2002, The Plant Cell Online.
[48] P. Bozhkov,et al. Developmental pathways of somatic embryogenesis , 2002, Plant Cell, Tissue and Organ Culture.
[49] Clément Thomas,et al. Immuno-cytochemical localization of indole-3-acetic acid during induction of somatic embryogenesis in cultured sunflower embryos , 2002, Planta.
[50] Bifeng Liu,et al. Analysis of plant hormones in tobacco flowers by micellar electrokinetic capillary chromatography coupled with on-line large volume sample stacking. , 2002, Journal of chromatography. A.
[51] Ottoline Leyser,et al. Auxin regulates SCFTIR1-dependent degradation of AUX/IAA proteins , 2001, Nature.
[52] V. Jiménez,et al. Endogenous hormone concentrations and embryogenic callus development in wheat , 2001, Plant Cell, Tissue and Organ Culture.
[53] N. Morozova,et al. Two Phases of Chromatin Decondensation during Dedifferentiation of Plant Cells , 2001, The Journal of Biological Chemistry.
[54] David M. Anderson,et al. Cotton Biotechnology , 2000 .
[55] M. Ashburner,et al. Gene Ontology: tool for the unification of biology , 2000, Nature Genetics.
[56] T. Thomas,et al. PEI1, an Embryo-Specific Zinc Finger Protein Gene Required for Heart-Stage Embryo Formation in Arabidopsis , 1998, Plant Cell.
[57] J. Kim,et al. Protein-protein interactions among the Aux/IAA proteins. , 1997, Proceedings of the National Academy of Sciences of the United States of America.
[58] G. Fink,et al. Arabidopsis mutants resistant to the auxin effects of indole-3-acetonitrile are defective in the nitrilase encoded by the NIT1 gene. , 1997, The Plant cell.
[59] H. Fukuda,et al. Isolation of a carrot gene expressed specifically during early-stage somatic embryogenesis , 1995, Plant Molecular Biology.
[60] M. Toonen,et al. Description of somatic-embryo-forming single cells in carrot suspension cultures employing video cell tracking , 1994, Planta.
[61] Candace Timpte,et al. Arabidopsis auxin-resistance gene AXR1 encodes a protein related to ubiquitin-activating enzyme E1 , 1993, Nature.
[62] T. J. Cooke,et al. Regulation of indole-3-acetic Acid biosynthetic pathways in carrot cell cultures. , 1992, Plant physiology.
[63] R. Thornburg,et al. Wounding Nicotiana tabacum Leaves Causes a Decline in Endogenous Indole-3-Acetic Acid. , 1991, Plant physiology.
[64] N. Trolinder,et al. Somatic embryogenesis and plant regeneration in cotton (Gossypium hirsutum L.) , 1987, Plant Cell Reports.
[65] G. Hagen,et al. Auxin-regulated gene expression in intact soybean hypocotyl and excised hypocotyl sections , 1984, Planta.
[66] M. Nabors,et al. Tryptophan enhancement of somatic embryogenesis in rice. , 1983, Plant physiology.
[67] Z. R. Sung,et al. Coordinate gene expression during somatic embryogenesis in carrots. , 1983, Proceedings of the National Academy of Sciences of the United States of America.
[68] J. Harada,et al. Arabidopsis embryogenesis. , 2008, Methods in molecular biology.
[69] L. Chuan-liang. cDNA-AFLP Analysis of Somatic Embryogenesis at Early Stage in TM-1(Gossypium hirsutum L.) , 2007 .
[70] Clive James,et al. Global status of commercialized biotech/GM crops: 2006. , 2006 .
[71] Lili Tu,et al. Isolation and Characterization of Genes Associated to Cotton Somatic Embryogenesis by Suppression Subtractive Hybridization and Macroarray* , 2005, Plant Molecular Biology.
[72] Kai J. Runte,et al. BMC Plant Biology , 2003 .
[73] V. Jiménez,et al. Endogenous hormone levels in habituated nucellar Citrus callus during the initial stages of regeneration , 2001, Plant Cell Reports.
[74] C. Cho,et al. Effect of indole-3-butyric acid on the endogenous indole-3-acetic acid and lignin contents in soybean hypocotyl during adventitious root formation , 2001 .
[75] U. Grossniklaus,et al. The Arabidopsis SOMATIC EMBRYOGENESIS RECEPTOR KINASE 1 gene is expressed in developing ovules and embryos and enhances embryogenic competence in culture. , 2001, Plant physiology.
[76] M. Kanehisa,et al. KEGG: Kyoto Encyclopedia of Genes and Genomes , 2000, Nucleic Acids Res..
[77] Shivashankar H. Nagaraj,et al. University of Birmingham High throughput functional annotation and data mining with the Blast2GO suite , 2022 .