Nanopore Decoding of Oligonucleotides in DNA Computing
暂无分享,去创建一个
[1] Masahiro Takinoue,et al. Nanopore Logic Operation with DNA to RNA Transcription in a Droplet System. , 2017, ACS synthetic biology.
[2] Ehud Shapiro,et al. DNA molecule provides a computing machine with both data and fuel , 2003, Proceedings of the National Academy of Sciences of the United States of America.
[3] Yong Wang,et al. Nanopore-based detection of circulating microRNAs in lung cancer patients , 2011, Nature nanotechnology.
[4] Changming Mao,et al. Ultrasensitive DNA detection by cycle isothermal amplification based on nicking endonuclease and its application to logic gates. , 2011, Biosensors & bioelectronics.
[5] Andrew D. Ellington,et al. Diagnostic Applications of Nucleic Acid Circuits , 2014, Accounts of chemical research.
[6] Sean Conlan,et al. Stochastic sensing of organic analytes by a pore-forming protein containing a molecular adapter , 1999, Nature.
[7] Norihisa Miki,et al. Logic Gate Operation by DNA Translocation through Biological Nanopores , 2016, PloS one.
[8] Mark Akeson,et al. Error rates for nanopore discrimination among cytosine, methylcytosine, and hydroxymethylcytosine along individual DNA strands , 2013, Proceedings of the National Academy of Sciences.
[9] Benedict Paten,et al. Improved data analysis for the MinION nanopore sequencer , 2015, Nature Methods.
[10] Clifford R. Johnson,et al. Solution of a 20-Variable 3-SAT Problem on a DNA Computer , 2002, Science.
[11] G. Seelig,et al. Enzyme-Free Nucleic Acid Logic Circuits , 2022 .
[12] Cees Dekker,et al. Hybrid pore formation by directed insertion of α-haemolysin into solid-state nanopores. , 2010, Nature nanotechnology.
[13] Amy E Herr,et al. Microfluidic immunoassays as rapid saliva-based clinical diagnostics , 2007, Proceedings of the National Academy of Sciences.
[14] Ryuji Kawano,et al. MicroRNA detection at femtomolar concentrations with isothermal amplification and a biological nanopore. , 2017, Nanoscale.
[15] Satoshi Kobayashi,et al. DNA sequence design using templates , 2002, New Generation Computing.
[16] M. Niederweis,et al. Nanopore DNA sequencing with MspA , 2010, Proceedings of the National Academy of Sciences.
[17] Susan Daniel,et al. Single ion-channel recordings using glass nanopore membranes. , 2007, Journal of the American Chemical Society.
[18] L F Landweber,et al. Molecular computation: RNA solutions to chess problems , 2000, Proc. Natl. Acad. Sci. USA.
[19] L F Landweber,et al. Chess games: a model for RNA based computation. , 1999, Bio Systems.
[20] Alexander Y. Grosberg,et al. Electrostatic Focusing of Unlabeled DNA into Nanoscale Pores using a Salt Gradient , 2009, Nature nanotechnology.
[21] H. Bayley,et al. Continuous base identification for single-molecule nanopore DNA sequencing. , 2009, Nature nanotechnology.
[22] M. Wallace,et al. Direct detection of membrane channels from gels using water-in-oil droplet bilayers. , 2007, Journal of the American Chemical Society.
[23] A. Saghatelian,et al. DNA-based photonic logic gates: AND, NAND, and INHIBIT. , 2003, Journal of the American Chemical Society.
[24] Kazuo Tanaka,et al. DNA logic gates. , 2004, Journal of the American Chemical Society.
[25] P D Kaplan,et al. DNA solution of the maximal clique problem. , 1997, Science.
[26] Cheulhee Jung,et al. Simple and universal platform for logic gate operations based on molecular beacon probes. , 2012, Small.
[27] Daniel H Stoloff,et al. Recent trends in nanopores for biotechnology. , 2013, Current opinion in biotechnology.
[28] Satoshi Kobayashi,et al. Molecular robots with sensors and intelligence. , 2014, Accounts of chemical research.
[29] G. Seelig,et al. Dynamic DNA nanotechnology using strand-displacement reactions. , 2011, Nature chemistry.
[30] Georg Seelig,et al. A spatially localized architecture for fast and modular DNA computing. , 2017, Nature nanotechnology.
[31] D. Branton,et al. Characterization of nucleic acids by nanopore analysis. , 2002, Accounts of chemical research.
[32] D. Branton,et al. Voltage-driven DNA translocations through a nanopore. , 2001, Physical review letters.
[33] Shoji Takeuchi,et al. Artificial Cell Membrane Systems for Biosensing Applications. , 2017, Analytical chemistry.
[34] J. Gouaux,et al. Structure of Staphylococcal α-Hemolysin, a Heptameric Transmembrane Pore , 1996, Science.
[35] Z. Ezziane. DNA computing: applications and challenges , 2006 .
[36] D. Branton,et al. The potential and challenges of nanopore sequencing , 2008, Nature Biotechnology.
[37] D. Branton,et al. Characterization of individual polynucleotide molecules using a membrane channel. , 1996, Proceedings of the National Academy of Sciences of the United States of America.
[38] Vincenzo Balzani,et al. Molecular logic circuits. , 2003, Chemphyschem : a European journal of chemical physics and physical chemistry.
[39] Ryuji Kawano,et al. Hairpin DNA Unzipping Analysis Using a Biological Nanopore Array , 2016 .
[40] William L. Hwang,et al. Droplet interface bilayers. , 2008, Molecular bioSystems.
[41] L M Adleman,et al. Molecular computation of solutions to combinatorial problems. , 1994, Science.
[42] Mark Akeson,et al. Replication of Individual DNA Molecules under Electronic Control Using a Protein Nanopore , 2010, Nature nanotechnology.
[43] Yi-Lun Ying,et al. Single molecule analysis by biological nanopore sensors. , 2014, The Analyst.
[44] Darko Stefanovic,et al. A deoxyribozyme-based molecular automaton , 2003, Nature Biotechnology.
[45] D. Deamer,et al. Sequence-specific detection of individual DNA polymerase complexes in real time using a nanopore. , 2007, Nature nanotechnology.
[46] M. Niederweis,et al. Single-molecule DNA detection with an engineered MspA protein nanopore , 2008, Proceedings of the National Academy of Sciences.
[47] Ryuji Kawano,et al. Controlling the translocation of single-stranded DNA through alpha-hemolysin ion channels using viscosity. , 2009, Langmuir : the ACS journal of surfaces and colloids.
[48] Yong Wang,et al. Designing a polycationic probe for simultaneous enrichment and detection of microRNAs in a nanopore. , 2013, ACS nano.
[49] Francesca Giordano,et al. Oxford Nanopore MinION Sequencing and Genome Assembly , 2016, Genom. Proteom. Bioinform..
[50] G Rozenberg,et al. Computing with DNA by operating on plasmids. , 2000, Bio Systems.
[51] Y. Benenson. Biomolecular computing systems: principles, progress and potential , 2012, Nature Reviews Genetics.
[52] Lulu Qian,et al. Supporting Online Material Materials and Methods Figs. S1 to S6 Tables S1 to S4 References and Notes Scaling up Digital Circuit Computation with Dna Strand Displacement Cascades , 2022 .
[53] J. Macdonald,et al. Deoxyribozyme-based ligase logic gates and their initial circuits. , 2005, Journal of the American Chemical Society.
[54] E. Shapiro,et al. An autonomous molecular computer for logical control of gene expression , 2004, Nature.
[55] Norihisa Miki,et al. Automated Parallel Recordings of Topologically Identified Single Ion Channels , 2013, Scientific Reports.
[56] D. Branton,et al. Microsecond time-scale discrimination among polycytidylic acid, polyadenylic acid, and polyuridylic acid as homopolymers or as segments within single RNA molecules. , 1999, Biophysical journal.
[57] Jehoshua Bruck,et al. Neural network computation with DNA strand displacement cascades , 2011, Nature.
[58] Ryuji Kawano,et al. DNA Logic Operation with Nanopore Decoding To Recognize MicroRNA Patterns in Small Cell Lung Cancer. , 2018, Analytical chemistry.
[59] Mark Akeson,et al. Automated Forward and Reverse Ratcheting of DNA in a Nanopore at Five Angstrom Precision1 , 2012, Nature Biotechnology.
[60] Jason Campbell,et al. Disease detection and management via single nanopore-based sensors. , 2012, Chemical reviews.
[61] Amit Meller,et al. Single molecule measurements of DNA transport through a nanopore , 2002, Electrophoresis.
[62] Shoji Takeuchi,et al. Lipid bilayer formation by contacting monolayers in a microfluidic device for membrane protein analysis. , 2006, Analytical chemistry.
[63] D. Y. Zhang,et al. Control of DNA strand displacement kinetics using toehold exchange. , 2009, Journal of the American Chemical Society.
[64] Amy E Herr,et al. Photopolymerized diffusion-defined polyacrylamide gradient gels for on-chip protein sizing. , 2008, Lab on a chip.
[65] Ryuji Kawano,et al. Amplification and Quantification of an Antisense Oligonucleotide from Target microRNA Using Programmable DNA and a Biological Nanopore. , 2017, Analytical chemistry.
[66] Ryuji Kawano,et al. Synthetic Ion Channels and DNA Logic Gates as Components of Molecular Robots. , 2018, Chemphyschem : a European journal of chemical physics and physical chemistry.
[67] Li-Qun Gu,et al. Programming Nanopore Ion Flow for Encoded Multiplex MicroRNA Detection , 2014, ACS nano.