Nucleic acids for the rational design of reaction circuits.
暂无分享,去创建一个
[1] Jonathan Bath,et al. Remote toehold: a mechanism for flexible control of DNA hybridization kinetics. , 2011, Journal of the American Chemical Society.
[2] A. Turberfield,et al. Programmable one-pot multistep organic synthesis using DNA junctions. , 2012, Journal of the American Chemical Society.
[3] Erik Winfree,et al. Molecular robots guided by prescriptive landscapes , 2010, Nature.
[4] Jonathan Bath,et al. Reversible logic circuits made of DNA. , 2011, Journal of the American Chemical Society.
[5] M. Jewett,et al. Cell-free synthetic biology: thinking outside the cell. , 2012, Metabolic engineering.
[6] Donny D. Licatalosi,et al. RNA processing and its regulation: global insights into biological networks , 2010, Nature Reviews Genetics.
[7] Priscilla E. M. Purnick,et al. The second wave of synthetic biology: from modules to systems , 2009, Nature Reviews Molecular Cell Biology.
[8] David Yu Zhang,et al. Cooperative hybridization of oligonucleotides. , 2011, Journal of the American Chemical Society.
[9] Erik Winfree,et al. DNA as a universal substrate for chemical kinetics , 2009, Proceedings of the National Academy of Sciences.
[10] E. Winfree,et al. Synthetic in vitro transcriptional oscillators , 2011, Molecular systems biology.
[11] Michael R. Diehl,et al. Configuring robust DNA strand displacement reactions for in situ molecular analyses , 2011, Nucleic acids research.
[12] Fluorescence Correlation Spectroscopy to Monitor Kai Protein-based Circadian Oscillations in Real Time* , 2011, The Journal of Biological Chemistry.
[13] Masahiro Takinoue,et al. RTRACS: a modularized RNA-dependent RNA transcription system with high programmability. , 2011, Accounts of chemical research.
[14] Robert M. Dirks,et al. Triggered amplification by hybridization chain reaction. , 2004, Proceedings of the National Academy of Sciences of the United States of America.
[15] N. Seeman,et al. Synthesis from DNA of a molecule with the connectivity of a cube , 1991, Nature.
[16] Peng Yin,et al. Optimizing the specificity of nucleic acid hybridization. , 2012, Nature chemistry.
[17] Robert M. Dirks,et al. Selective cell death mediated by small conditional RNAs , 2010, Proceedings of the National Academy of Sciences.
[18] Teruo Fujii,et al. Computing with competition in biochemical networks. , 2012, Physical review letters.
[19] A. Turberfield,et al. Sequence-specific synthesis of macromolecules using DNA-templated chemistry. , 2012, Chemical communications.
[20] Darko Stefanovic,et al. Deoxyribozyme-based logic gates. , 2002, Journal of the American Chemical Society.
[21] Vincent Noireaux,et al. Coarse-grained dynamics of protein synthesis in a cell-free system. , 2011, Physical review letters.
[22] Tao Zhang,et al. Self‐Assembled DNA Hydrogels with Designable Thermal and Enzymatic Responsiveness , 2011, Advanced materials.
[23] E. Winfree,et al. Robust self-replication of combinatorial information via crystal growth and scission , 2012, Proceedings of the National Academy of Sciences.
[24] G. Seelig,et al. Enzyme-Free Nucleic Acid Logic Circuits , 2022 .
[25] R. Murray,et al. Timing molecular motion and production with a synthetic transcriptional clock , 2011, Proceedings of the National Academy of Sciences.
[26] N. Seeman,et al. A Proximity-Based Programmable DNA Nanoscale Assembly Line , 2010, Nature.
[27] Amina A. Qutub,et al. Multiplexed in situ immunofluorescence using dynamic DNA complexes. , 2012, Angewandte Chemie.
[28] D. Bedeaux,et al. Non-equilibrium Thermodynamics of Heterogeneous Systems , 2008, Series on Advances in Statistical Mechanics.
[29] Xingguo Liang,et al. A light-driven DNA nanomachine for the efficient photoswitching of RNA digestion. , 2010, Angewandte Chemie.
[30] Erik Winfree,et al. Robustness and modularity properties of a non-covalent DNA catalytic reaction , 2010, Nucleic acids research.
[31] R. Levine,et al. DNA computing circuits using libraries of DNAzyme subunits. , 2010, Nature nanotechnology.
[32] Xi Chen,et al. Expanding the rule set of DNA circuitry with associative toehold activation. , 2012, Journal of the American Chemical Society.
[33] Teruo Fujii,et al. Bottom-up construction of in vitro switchable memories , 2012, Proceedings of the National Academy of Sciences.
[34] Michael C Jewett,et al. Update on designing and building minimal cells. , 2010, Current opinion in biotechnology.
[35] David Z. Chen,et al. Architecture of the human regulatory network derived from ENCODE data , 2012, Nature.
[36] Shawn M. Douglas,et al. A Logic-Gated Nanorobot for Targeted Transport of Molecular Payloads , 2012, Science.
[37] D. Y. Zhang,et al. Engineering Entropy-Driven Reactions and Networks Catalyzed by DNA , 2007, Science.
[38] Teruo Fujii,et al. Quencher-free multiplexed monitoring of DNA reaction circuits , 2012, Nucleic acids research.
[39] Hong Qian,et al. Oscillations and multiscale dynamics in a closed chemical reaction system: second law of thermodynamics and temporal complexity. , 2008, The Journal of chemical physics.
[40] A. Turberfield,et al. A DNA-fuelled molecular machine made of DNA , 2022 .
[41] Lulu Qian,et al. Efficient Turing-Universal Computation with DNA Polymers , 2010, DNA.
[42] Michael C Jewett,et al. Synthetic in vitro circuits. , 2012, Current opinion in chemical biology.
[43] Lila Kari,et al. Scalable, Time-Responsive, Digital, Energy-Efficient Molecular Circuits Using DNA Strand Displacement , 2010, DNA.
[44] Jehoshua Bruck,et al. Neural network computation with DNA strand displacement cascades , 2011, Nature.
[45] L. Jaeger,et al. Multistrand RNA secondary structure prediction and nanostructure design including pseudoknots. , 2011, ACS nano.
[46] Lulu Qian,et al. A Simple DNA Gate Motif for Synthesizing Large-Scale Circuits , 2008, DNA.
[47] Y Liu,et al. Direct mass measurements of short-lived A=2Z-1 nuclides (63)Ge, (65)As, (67)Se, and (71)Kr and their impact on nucleosynthesis in the rp process. , 2011, Physical review letters.
[48] Y. Sakai,et al. Programming an in vitro DNA oscillator using a molecular networking strategy , 2011, Molecular systems biology.
[49] Akira Suyama,et al. A DNA Based Molecular Logic Gate Capable of a Variety of Logical Operations , 2012, DNA.
[50] M. Nowak,et al. From prelife to life: how chemical kinetics become evolutionary dynamics. , 2012, Accounts of chemical research.
[51] M. Elowitz,et al. A synthetic oscillatory network of transcriptional regulators , 2000, Nature.
[52] E. Winfree,et al. Construction of an in vitro bistable circuit from synthetic transcriptional switches , 2006, Molecular systems biology.
[53] Vincent Noireaux,et al. Efficient cell-free expression with the endogenous E. Coli RNA polymerase and sigma factor 70 , 2010, Journal of biological engineering.
[54] Y. Rondelez. Competition for catalytic resources alters biological network dynamics. , 2012, Physical review letters.
[55] Luca Cardelli. Strand Algebras for DNA Computing , 2009, DNA.
[56] Lulu Qian,et al. Supporting Online Material Materials and Methods Figs. S1 to S6 Tables S1 to S4 References and Notes Scaling up Digital Circuit Computation with Dna Strand Displacement Cascades , 2022 .
[57] N. Seeman,et al. Design and self-assembly of two-dimensional DNA crystals , 1998, Nature.
[58] V. Noireaux,et al. An E. coli cell-free expression toolbox: application to synthetic gene circuits and artificial cells. , 2012, ACS synthetic biology.
[59] H. Asanuma,et al. A photon-fueled DNA nanodevice that contains two different photoswitches. , 2012, Angewandte Chemie.
[60] J. Schnakenberg,et al. G. Nicolis und I. Prigogine: Self‐Organization in Nonequilibrium Systems. From Dissipative Structures to Order through Fluctuations. J. Wiley & Sons, New York, London, Sydney, Toronto 1977. 491 Seiten, Preis: £ 20.–, $ 34.– , 1978 .
[61] Moh’d A. Al-Nimr,et al. Non-equilibrium thermodynamics of heterogeneous systems , 2010 .
[62] Luca Cardelli,et al. Abstractions for DNA circuit design , 2011, Journal of The Royal Society Interface.
[63] Erik Winfree,et al. Ensemble Bayesian analysis of bistability in a synthetic transcriptional switch. , 2012, ACS synthetic biology.
[64] Grégoire Nicolis,et al. Self-Organization in nonequilibrium systems , 1977 .
[65] N. Seeman. Nucleic acid junctions and lattices. , 1982, Journal of theoretical biology.
[66] L M Adleman,et al. Molecular computation of solutions to combinatorial problems. , 1994, Science.