Oxygen extraction fraction mapping at 3 Tesla using an artificial neural network: A feasibility study

The oxygen extraction fraction (OEF) is an important biomarker for tissue‐viability. MRI enables noninvasive estimation of the OEF based on the blood‐oxygenation‐level‐dependent (BOLD) effect. Quantitative OEF‐mapping is commonly applied using least‐squares regression (LSR) to an analytical tissue model. However, the LSR method has not yet become clinically established due to the necessity for long acquisition times. Artificial neural networks (ANNs) recently have received increasing interest for robust curve‐fitting and might pose an alternative to the conventional LSR method for reduced acquisition times. This study presents in vivo OEF mapping results using the conventional LSR and the proposed ANN method.

[1]  Radford M. Neal Pattern Recognition and Machine Learning , 2007, Technometrics.

[2]  Sung Min Kim,et al.  Classification of focal liver lesions on ultrasound images by extracting hybrid textural features and using an artificial neural network. , 2015, Bio-medical materials and engineering.

[3]  Amogh B. Shetty,et al.  CURVE FITTING FOR COARSE DATA USING ARTIFICIAL NEURAL NETWORK , 2014 .

[4]  H. Fukuyama,et al.  [Cerebral hemodynamics and risk for recurrent stroke in symptomatic internal carotid artery occlusion]. , 1999, Rinsho shinkeigaku = Clinical neurology.

[5]  Dirk Troost,et al.  Addressing diffuse glioma as a systemic brain disease with single-cell analysis. , 2012, Archives of neurology.

[6]  M E Raichle,et al.  Positron emission tomography and its application to the study of cerebrovascular disease in man. , 1985, Stroke.

[7]  Yves Grandvalet,et al.  Comments on "Noise injection into inputs in back propagation learning" , 1995, IEEE Trans. Syst. Man Cybern..

[8]  Shun-Feng Su,et al.  The annealing robust backpropagation (ARBP) learning algorithm , 2000, IEEE Trans. Neural Networks Learn. Syst..

[9]  M. Mintun,et al.  Brain oxygen utilization measured with O-15 radiotracers and positron emission tomography. , 1984, Journal of nuclear medicine : official publication, Society of Nuclear Medicine.

[10]  M Köck,et al.  Pattern recognition of respirable dust particles by a back-propagation artificial neural network. , 2001, Central European journal of public health.

[11]  T Caelli,et al.  Machine learning paradigms for pattern recognition and image understanding. , 1996, Spatial vision.

[12]  Kiyotoshi Matsuoka,et al.  Noise injection into inputs in back-propagation learning , 1992, IEEE Trans. Syst. Man Cybern..

[13]  Lothar R. Schad,et al.  Non-invasive multiparametric qBOLD approach for robust mapping of the oxygen extraction fraction. , 2014, Zeitschrift fur medizinische Physik.

[14]  William J Powers,et al.  Variability of cerebral blood volume and oxygen extraction: stages of cerebral haemodynamic impairment revisited. , 2002, Brain : a journal of neurology.

[15]  H. Song,et al.  Fast 3D large‐angle spin‐echo imaging (3D FLASE) , 1996, Magnetic resonance in medicine.

[16]  K. B. Larson,et al.  In Vivo Determination of Cerebral Blood Volume with Radioactive Oxygen‐15 in the Monkey , 1975, Circulation research.

[17]  D. Yablonskiy,et al.  Quantitation of intrinsic magnetic susceptibility‐related effects in a tissue matrix. Phantom study , 1998, Magnetic resonance in medicine.

[18]  Jan Sedlacik,et al.  Obtaining blood oxygenation levels from MR signal behavior in the presence of single venous vessels , 2007, Magnetic resonance in medicine.

[19]  Jan Sedlacik,et al.  Validation of quantitative estimation of tissue oxygen extraction fraction and deoxygenated blood volume fraction in phantom and in vivo experiments by using MRI , 2010, Magnetic resonance in medicine.

[20]  Dinggang Shen,et al.  3D Deep Learning for Multi-modal Imaging-Guided Survival Time Prediction of Brain Tumor Patients , 2016, MICCAI.

[21]  J Beier,et al.  MRI-assisted specification/localization of target volumes. Aspects of quality control. , 1998, Strahlentherapie und Onkologie : Organ der Deutschen Rontgengesellschaft ... [et al].

[22]  Iwao Kanno,et al.  Database of normal human cerebral blood flow, cerebral blood volume, cerebral oxygen extraction fraction and cerebral metabolic rate of oxygen measured by positron emission tomography with 15O-labelled carbon dioxide or water, carbon monoxide and oxygen: a multicentre study in Japan , 2004, European Journal of Nuclear Medicine and Molecular Imaging.

[23]  C. M. Roach,et al.  Fast curve fitting using neural networks , 1992 .

[24]  Halbert White,et al.  Connectionist nonparametric regression: Multilayer feedforward networks can learn arbitrary mappings , 1990, Neural Networks.

[25]  Lothar R Schad,et al.  Machine learning in preoperative glioma MRI: Survival associations by perfusion‐based support vector machine outperforms traditional MRI , 2014, Journal of magnetic resonance imaging : JMRI.

[26]  E. Haacke,et al.  Theory of NMR signal behavior in magnetically inhomogeneous tissues: The static dephasing regime , 1994, Magnetic resonance in medicine.

[27]  Kurt Hornik,et al.  Approximation capabilities of multilayer feedforward networks , 1991, Neural Networks.

[28]  K L Lam,et al.  Computerized classification of malignant and benign microcalcifications on mammograms: texture analysis using an artificial neural network. , 1997, Physics in medicine and biology.

[29]  K. Langen,et al.  Correlative Imaging of Hypoxia and Angiogenesis in Oncology , 2008, Journal of Nuclear Medicine.

[30]  Jan Sedlacik,et al.  Quantification of modulated blood oxygenation levels in single cerebral veins by investigating their MR signal decay. , 2009, Zeitschrift fur medizinische Physik.

[31]  L. Schad,et al.  Susceptibility‐related MR signal dephasing under nonstatic conditions: Experimental verification and consequences for qBOLD measurements , 2011, Journal of Magnetic Resonance Imaging.

[32]  Ken-ichi Funahashi,et al.  On the approximate realization of continuous mappings by neural networks , 1989, Neural Networks.

[33]  Bogdan Raducanu,et al.  Online pattern recognition and machine learning techniques for computer-vision: Theory and applications , 2010, Image Vis. Comput..

[34]  Maureen Mitchell,et al.  Pattern Recognition of Vertical Strabismus Using an Artificial Neural Network (StrabNet©) , 2009, Strabismus.

[35]  Weili Lin,et al.  Quantitative Measurements of Cerebral Blood Oxygen Saturation Using Magnetic Resonance Imaging , 2000, Journal of cerebral blood flow and metabolism : official journal of the International Society of Cerebral Blood Flow and Metabolism.

[36]  A. Giaccia,et al.  The unique physiology of solid tumors: opportunities (and problems) for cancer therapy. , 1998, Cancer research.

[37]  Aaron Carass,et al.  Deep Learning for Cerebellar Ataxia Classification and Functional Score Regression , 2014, MLMI.

[38]  Weili Lin,et al.  Cerebral oxygen extraction fraction and cerebral venous blood volume measurements using MRI: Effects of magnetic field variation , 2002, Magnetic resonance in medicine.

[39]  Lorenzo L. Pesce,et al.  Noise injection for training artificial neural networks: a comparison with weight decay and early stopping. , 2009, Medical physics.

[40]  Yves Grandvalet,et al.  Noise Injection: Theoretical Prospects , 1997, Neural Computation.

[41]  C. Iadecola Neurovascular regulation in the normal brain and in Alzheimer's disease , 2004, Nature Reviews Neuroscience.

[42]  Jocelyn Sietsma,et al.  Creating artificial neural networks that generalize , 1991, Neural Networks.

[43]  Christopher M. Bishop,et al.  Current address: Microsoft Research, , 2022 .

[44]  A. Gjedde,et al.  Improvement of brain tissue oxygenation by inhalation of carbogen , 2008, Neuroscience.

[45]  Shun-Feng Su,et al.  Robust support vector regression networks for function approximation with outliers , 2002, IEEE Trans. Neural Networks.

[46]  Ferdinand Schweser,et al.  Foundations of MRI phase imaging and processing for Quantitative Susceptibility Mapping (QSM). , 2016, Zeitschrift fur medizinische Physik.

[47]  J. Seoane,et al.  Glioblastoma Multiforme: A Look Inside Its Heterogeneous Nature , 2014, Cancers.

[48]  F Shishido,et al.  Reduction in regional cerebral metabolic rate of oxygen during human aging. , 1986, Stroke.

[49]  D. Yablonskiy,et al.  Water proton MR properties of human blood at 1.5 Tesla: Magnetic susceptibility, T1, T2, T  *2 , and non‐Lorentzian signal behavior , 2001, Magnetic resonance in medicine.

[50]  Frank G Zöllner,et al.  Support vector machines in DSC‐based glioma imaging: Suggestions for optimal characterization , 2010, Magnetic resonance in medicine.

[51]  N. Linder,et al.  Antibody-supervised deep learning for quantification of tumor-infiltrating immune cells in hematoxylin and eosin stained breast cancer samples , 2016, Journal of pathology informatics.

[52]  D. Yablonskiy,et al.  Quantitative BOLD: Mapping of human cerebral deoxygenated blood volume and oxygen extraction fraction: Default state , 2007, Magnetic resonance in medicine.

[53]  Guozhong An,et al.  The Effects of Adding Noise During Backpropagation Training on a Generalization Performance , 1996, Neural Computation.

[54]  D. Tank,et al.  Brain magnetic resonance imaging with contrast dependent on blood oxygenation. , 1990, Proceedings of the National Academy of Sciences of the United States of America.

[55]  M Molls,et al.  Relevance of oxygen in radiation oncology. Mechanisms of action, correlation to low hemoglobin levels. , 1998, Strahlentherapie und Onkologie : Organ der Deutschen Rontgengesellschaft ... [et al].