On the use of graph invariants for efficiently generating hydrogen bond topologies and predicting physical properties of water clusters and ice

Water clusters and some phases of ice are characterized by many isomers with similar oxygen positions, but which differ in direction of hydrogen bonds. A relationship between physical properties, like energy or magnitude of the dipole moment, and hydrogen bond arrangements has long been conjectured. The topology of the hydrogen bond network can be summarized by oriented graphs. Since scalar physical properties like the energy are invariant to symmetry operations, graphical invariants are the proper features of the hydrogen bond network which can be used to discover the correlation with physical properties. We demonstrate how graph invariants are generated and illustrate some of their formal properties. It is shown that invariants can be used to change the enumeration of symmetry-distinct hydrogen bond topologies, nominally a task whose computational cost scales like N2, where N is the number of configurations, into an N ln N process. The utility of graph invariants is confirmed by considering two water clusters, the (H2O)6 cage and (H2O)20 dodecahedron, which, respectively, possess 27 and 30 026 symmetry-distinct hydrogen bond topologies associated with roughly the same oxygen atom arrangements. Physical properties of these clusters are successfully fit to a handful of graph invariants. Using a small number of isomers as a training set, the energy of other isomers of the (H2O)20 dodecahedron can even be estimated well enough to locate phase transitions. Some preliminary results for unit cells of ice-Ih are given to illustrate the application of our results to periodic systems.

[1]  David J. Wales,et al.  Coexistence in small inert gas clusters , 1993 .

[2]  Thomas A. Weber,et al.  Dynamics of structural transitions in liquids , 1983 .

[3]  Sherwin J. Singer,et al.  Graph Theoretical Generation and Analysis of Hydrogen-Bonded Structures with Applications to the Neutral and Protonated Water Cube and Dodecahedral Clusters , 1998 .

[4]  V. Buch,et al.  Simulations of H2O Solid, Liquid, and Clusters, with an Emphasis on Ferroelectric Ordering Transition in Hexagonal Ice , 1998 .

[5]  D. C. Clary,et al.  The Water Dipole Moment in Water Clusters , 1997, Science.

[6]  C. J. Tsai,et al.  Theoretical study of the (H2O)6 cluster , 1993 .

[7]  J. Stewart Optimization of parameters for semiempirical methods II. Applications , 1989 .

[8]  J. J. Burton Vibrational Frequencies and Entropies of Small Clusters of Atoms , 1972 .

[9]  R. Whitworth,et al.  A determination of the crystal structure of ice XI , 1989 .

[10]  Chick C. Wilson,et al.  Single-Crystal Neutron Diffraction Studies of the Structure of Ice XI , 1997 .

[11]  A. Kolesnikov,et al.  Inelastic neutron scattering investigation of Greenland ices , 2000 .

[12]  Jonathan P. K. Doye,et al.  Calculation of thermodynamic properties of small Lennard‐Jones clusters incorporating anharmonicity , 1995 .

[13]  E. Davidson,et al.  Structure of ice Ih. Ab initio two- and three-body water-water potentials and geometry optimization , 1985 .

[14]  K. Jordan,et al.  Low-Energy Structures and Vibrational Frequencies of the Water Hexamer: Comparison with Benzene-(H2O)6 , 1994 .

[15]  William C. Herndon,et al.  Graph theoretical analysis of water clusters , 1991 .

[16]  Isaiah Shavitt,et al.  Potential models for simulations of the solvated proton in water , 1998 .

[17]  Jongseob Kim,et al.  Structures, binding energies, and spectra of isoenergetic water hexamer clusters: Extensive ab initio studies , 1998 .

[18]  Y. Tajima,et al.  Calorimetric study of phase transition in hexagonal ice doped with alkali hydroxides , 1984 .

[19]  M. J. Iedema,et al.  Reply to comment on ''Ferroelectricity in Water Ice'' , 1999 .

[20]  Thomas A. Weber,et al.  Hidden structure in liquids , 1982 .

[21]  Wayne Pullan,et al.  Genetic operators for the atomic cluster problem , 1997 .

[22]  Paul G. Mezey,et al.  Potential Energy Hypersurfaces , 1987 .

[23]  Y. Tajima,et al.  Calorimetric study of a phase transition in D2O ice Ih doped with KOD: Ice XI , 1986 .

[24]  Walter Kauzmann,et al.  The Structure and Properties of Water , 1969 .

[25]  David Jackson McGinty,et al.  Vapor phase homogeneous nucleation and the thermodynamic properties of small clusters of argon atoms , 1971 .

[26]  R. Whitworth,et al.  Thermally-Stimulated Depolarization Studies of the Ice XI−Ice Ih Phase Transition , 1997 .

[27]  K. Jordan,et al.  Theoretical study of the n-body interaction energies of the ring, cage and prism forms of (H2O)6 , 1998 .

[28]  J. Tse,et al.  Comments on “Further evidence for the existence of two kinds of H-bonds in ice Ih” by Li et al , 1995 .

[29]  N. Bjerrum Structure and Properties of Ice. , 1952, Science.

[30]  K. Jordan,et al.  Infrared Spectrum of a Molecular Ice Cube: The S4 and D2d Water Octamers in Benzene-(Water)8 , 1997 .

[31]  John F. Nagle,et al.  Lattice Statistics of Hydrogen Bonded Crystals. I. The Residual Entropy of Ice , 1966 .

[32]  Y. Tajima,et al.  Phase transition in KOH-doped hexagonal ice , 1982, Nature.

[33]  L. Pauling The Structure and Entropy of Ice and of Other Crystals with Some Randomness of Atomic Arrangement , 1935 .

[34]  R. Whitworth,et al.  A high resolution neutron powder diffraction study of D2O ice XI , 1996 .

[35]  Eberhard R. Hilf,et al.  The structure of small clusters: Multiple normal-modes model , 1993 .

[36]  G. Fitzgerald,et al.  Structures of the water hexamer using density functional methods , 1994 .

[37]  R. Howe THE POSSIBLE ORDERED STRUCTURES OF ICE Ih , 1987 .

[38]  F. Stillinger,et al.  Residual Entropy of Ice , 1964 .

[39]  J. D. Bernal,et al.  A Theory of Water and Ionic Solution, with Particular Reference to Hydrogen and Hydroxyl Ions , 1933 .

[40]  Frank Harary,et al.  Graph Theory , 2016 .

[41]  F. Stillinger,et al.  Proton Distribution in Ice and the Kirkwood Correlation Factor , 1972 .

[42]  O. Watanabe,et al.  Proton ordering in Antarctic ice observed by Raman and neutron scattering , 1998 .

[43]  J. Reimers,et al.  Unit cells for the simulation of hexagonal ice , 1997 .

[44]  J. W. Stout,et al.  The Entropy of Water and the Third Law of Thermodynamics. The Heat Capacity of Ice from 15 to 273°K. , 1936 .

[45]  John Lekner,et al.  Energetics of hydrogen ordering in ice , 1998 .

[46]  D. Ross,et al.  Evidence for two kinds of hydrogen bond in ice , 1993, Nature.

[47]  W. Hess,et al.  Ferroelectricity in Water Ice , 1998 .

[48]  Richard C. Ward,et al.  The equilibrium low‐temperature structure of ice , 1985 .

[49]  R. Whitworth,et al.  Evidence for ferroelectric ordering of ice Ih , 1995 .

[50]  S. J. Singer,et al.  Enumeration and Evaluation of the Water Hexamer Cage Structure , 2000 .

[51]  E. Davidson,et al.  A proposed antiferroelectric structure for proton ordered ice Ih , 1984 .