In vivo mouse and live cell STED microscopy of neuronal actin plasticity using far-red emitting fluorescent proteins

The study of proteins in dendritic processes within the living brain is mainly hampered by the diffraction limit of light. STED microscopy is so far the only far-field light microscopy technique to overcome the diffraction limit and resolve dendritic spine plasticity at superresolution (nanoscopy) in the living mouse. After having tested several far-red fluorescent proteins in cell culture we report here STED microscopy of the far-red fluorescent protein mNeptune2, which showed best results for our application to superresolve actin filaments at a resolution of ~80 nm, and to observe morphological changes of actin in the cortex of a living mouse. We illustrate in vivo far-red neuronal actin imaging in the living mouse brain with superresolution for time periods of up to one hour. Actin was visualized by fusing mNeptune2 to the actin labels Lifeact or Actin-Chromobody. We evaluated the concentration dependent influence of both actin labels on the appearance of dendritic spines; spine number was significantly reduced at high expression levels whereas spine morphology was normal at low expression.

[1]  M. Ehlers,et al.  Optimizing promoters for recombinant adeno-associated virus-mediated gene expression in the peripheral and central nervous system using self-complementary vectors. , 2011, Human gene therapy.

[2]  U Valentin Nägerl,et al.  STED nanoscopy of actin dynamics in synapses deep inside living brain slices. , 2011, Biophysical journal.

[3]  T. Pollard,et al.  Avoiding artefacts when counting polymerized actin in live cells with LifeAct fused to fluorescent proteins , 2016, Nature Cell Biology.

[4]  R. Tsien,et al.  Improved monomeric red, orange and yellow fluorescent proteins derived from Discosoma sp. red fluorescent protein , 2004, Nature Biotechnology.

[5]  V. Ntziachristos Going deeper than microscopy: the optical imaging frontier in biology , 2010, Nature Methods.

[6]  T. Ha,et al.  Dual-color three-dimensional STED microscopy with a single high-repetition-rate laser. , 2015, Optics letters.

[7]  Stefan W. Hell,et al.  Supporting Online Material Materials and Methods Figs. S1 to S9 Tables S1 and S2 References Video-rate Far-field Optical Nanoscopy Dissects Synaptic Vesicle Movement , 2022 .

[8]  T. Holak,et al.  Lifeact: a versatile marker to visualize F-actin , 2008, Nature Methods.

[9]  Francisco Balzarotti,et al.  Ultrastructural anatomy of nodes of Ranvier in the peripheral nervous system as revealed by STED microscopy , 2016, Proceedings of the National Academy of Sciences.

[10]  R. Tsien,et al.  Evolution of new nonantibody proteins via iterative somatic hypermutation. , 2004, Proceedings of the National Academy of Sciences of the United States of America.

[11]  T. Tootle,et al.  The pros and cons of common actin labeling tools for visualizing actin dynamics during Drosophila oogenesis. , 2014, Developmental biology.

[12]  L. Strukova,et al.  A monomeric red fluorescent protein with low cytotoxicity , 2012, Nature Communications.

[13]  Michael Z. Lin,et al.  Autofluorescent proteins with excitation in the optical window for intravital imaging in mammals. , 2009, Chemistry & biology.

[14]  Michael Z. Lin,et al.  Improving FRET dynamic range with bright green and red fluorescent proteins , 2012, Nature Methods.

[15]  Andrea Burgalossi,et al.  Analysis of neurotransmitter release mechanisms by photolysis of caged Ca2+ in an autaptic neuron culture system , 2012, Nature Protocols.

[16]  M. Kinjo,et al.  pH Dependence of the Fluorescence Lifetime of FAD in Solution and in Cells , 2013, International journal of molecular sciences.

[17]  Stefan W Hell,et al.  STED nanoscopy reveals the ubiquity of subcortical cytoskeleton periodicity in living neurons. , 2015, Cell reports.

[18]  M. Schell,et al.  Neuronal IP3 3-kinase is an F-actin-bundling protein: role in dendritic targeting and regulation of spine morphology. , 2009, Molecular biology of the cell.

[19]  Alf Honigmann,et al.  Coaligned dual-channel STED nanoscopy and molecular diffusion analysis at 20 nm resolution. , 2013, Biophysical journal.

[20]  Thomas Fothergill,et al.  Synaptic Regulation of Microtubule Dynamics in Dendritic Spines by Calcium, F-Actin, and Drebrin , 2013, The Journal of Neuroscience.

[21]  Andras Nagy,et al.  Cre recombinase: The universal reagent for genome tailoring , 2000, Genesis.

[22]  S. Kügler,et al.  Human synapsin 1 gene promoter confers highly neuron-specific long-term transgene expression from an adenoviral vector in the adult rat brain depending on the transduced area , 2003, Gene Therapy.

[23]  Stefan W. Hell,et al.  A Rapidly Maturing Far-Red Derivative of DsRed-Express2 for Whole-Cell Labeling , 2009, Biochemistry.

[24]  G. Ulrich Nienhaus,et al.  mRuby, a Bright Monomeric Red Fluorescent Protein for Labeling of Subcellular Structures , 2009, PloS one.

[25]  R. Grosse,et al.  Nuclear F-actin Formation and Reorganization upon Cell Spreading*♦ , 2015, The Journal of Biological Chemistry.

[26]  Le Cong,et al.  Multiplex Genome Engineering Using CRISPR/Cas Systems , 2013, Science.

[27]  R. Tsien,et al.  Reducing the Environmental Sensitivity of Yellow Fluorescent Protein , 2001, The Journal of Biological Chemistry.

[28]  W. Denk,et al.  Two-photon laser scanning fluorescence microscopy. , 1990, Science.

[29]  Andreas Wenzel,et al.  Noninvasive, In Vivo Assessment of Mouse Retinal Structure Using Optical Coherence Tomography , 2009, PloS one.

[30]  Nathalie L Rochefort,et al.  Dendritic spines: from structure to in vivo function , 2012, EMBO reports.

[31]  S. Hell,et al.  Lens-based fluorescence nanoscopy , 2015, Quarterly Reviews of Biophysics.

[32]  M. Chalfie GREEN FLUORESCENT PROTEIN , 1995, Photochemistry and photobiology.

[33]  Kristin L. Hazelwood,et al.  Far-red fluorescent tags for protein imaging in living tissues. , 2009, The Biochemical journal.

[34]  Katrin I Willig,et al.  Nanoscopy of filamentous actin in cortical dendrites of a living mouse. , 2014, Biophysical journal.

[35]  Joerg Bewersdorf,et al.  Far-red fluorescent protein excitable with red lasers for flow cytometry and superresolution STED nanoscopy. , 2010, Biophysical journal.

[36]  R. Grosse,et al.  Actin visualization at a glance , 2017, Development.

[37]  Y. Ishitsuka,et al.  Monomeric Garnet, a far-red fluorescent protein for live-cell STED imaging , 2015, Scientific Reports.

[38]  A. Emons,et al.  High expression of Lifeact in Arabidopsis thaliana reduces dynamic reorganization of actin filaments but does not affect plant development , 2011, Cytoskeleton.

[39]  S. Hell,et al.  Fluorogenic probes for live-cell imaging of the cytoskeleton , 2014, Nature Methods.

[40]  Stefan W. Hell,et al.  Nanoscopy in a Living Mouse Brain , 2012, Science.

[41]  Alexander Lichius,et al.  A versatile set of Lifeact-RFP expression plasmids for live-cell imaging of F-actin in filamentous fungi , 2010 .

[42]  Heinrich Leonhardt,et al.  Targeting and tracing antigens in live cells with fluorescent nanobodies , 2006, Nature Methods.

[43]  Johannes E. Schindelin,et al.  Fiji: an open-source platform for biological-image analysis , 2012, Nature Methods.

[44]  S. Hell,et al.  Nanoscale resolution in GFP-based microscopy , 2006, Nature Methods.

[45]  Michael Z. Lin,et al.  Non-invasive intravital imaging of cellular differentiation with a bright red-excitable fluorescent protein , 2014, Nature Methods.