New modules for the repeated internal and N‐terminal epitope tagging of genes in Saccharomyces cerevisiae

Epitope tagging is a powerful method for the rapid analysis of protein function. In Saccharomyces cerevisiae epitope tags are introduced easily into chromosomal loci by homologous recombination using a simple PCR‐based strategy. Although quite a number of tools exist for C‐terminal tagging as well as N‐terminal tagging of proteins expressed by heterologous promoters, there are only very limited possibilities to tag proteins at the N‐terminus and retain the endogenous expression level. Furthermore, no PCR‐templates for internal tagging have been reported. Here we describe new modules that are suitable for both the repeated N‐terminal and internal tagging of proteins, leaving their endogenous promoters intact. The tags include 6xHA, 9xMyc, yEGFP, TEV‐GST‐6xHIS, ProtA, TEV‐ProtA and TEV‐ProtA‐7xHIS in conjunction with different heterologous selection markers. Copyright © 2004 John Wiley & Sons, Ltd.

[1]  M. Schmitt,et al.  in Saccharomyces cerevisiae , 1995 .

[2]  P. Andrade,et al.  Analysis of non-coloured phenolics in red wine: Effect of Dekkera bruxellensis yeast , 2005 .

[3]  M. Ballesteros,et al.  Ethanol from lignocellulosic materials by a simultaneous saccharification and fermentation process (SFS) with Kluyveromyces marxianus CECT 10875 , 2004 .

[4]  M. Deplano,et al.  Occurrence and characterization of yeasts isolated from artisanal Fiore Sardo cheese. , 2004, International journal of food microbiology.

[5]  M. Vassileva,et al.  Improvement of soil characteristics and growth of Dorycnium pentaphyllum by amendment with agrowastes and inoculation with AM fungi and/or the yeast Yarowia lipolytica. , 2004, Chemosphere.

[6]  O. Erdeve,et al.  The probiotic effect of Saccharomyces boulardii in a pediatric age group. , 2004, Journal of tropical pediatrics.

[7]  D. Cașcaval,et al.  Prediction of oxygen mass transfer coefficients in stirred bioreactors for bacteria, yeasts and fungus broths , 2004 .

[8]  Alistair J. P. Brown,et al.  The Candida albicans CaACE2 gene affects morphogenesis, adherence and virulence , 2004, Molecular microbiology.

[9]  Gemma Reverter-Branchat,et al.  Oxidative Damage to Specific Proteins in Replicative and Chronological-aged Saccharomyces cerevisiae , 2004, Journal of Biological Chemistry.

[10]  J. Patton-Vogt,et al.  Glycerophosphoinositol, a Novel Phosphate Source Whose Transport Is Regulated by Multiple Factors in Saccharomyces cerevisiae* , 2004, Journal of Biological Chemistry.

[11]  M. Ishiguro,et al.  Comprehensive Chimeric Analysis of Amino Acid Residues Critical for High Affinity Glucose Transport by Hxt2 of Saccharomyces cerevisiae* , 2004, Journal of Biological Chemistry.

[12]  D. Thiele,et al.  Cti6 Is an Rpd3-Sin3 Histone Deacetylase-associated Protein Required for Growth under Iron-limiting Conditions in Saccharomyces cerevisiae* , 2004, Journal of Biological Chemistry.

[13]  D. Svergun,et al.  Structural analysis of the stalk subunit Vma5p of the yeast V‐ATPase in solution , 2004, FEBS letters.

[14]  Xiaohua Xu,et al.  P‐domain and lectin site are involved in the chaperone function of Saccharomyces cerevisiae calnexin homologue , 2004, FEBS letters.

[15]  J. Moreno,et al.  Effect of Schizosaccharomyces pombe on aromatic compounds in dry sherry wines containing high levels of gluconic acid. , 2004, Journal of agricultural and food chemistry.

[16]  K. Muniyappa,et al.  Saccharomyces cerevisiae Hop1 Zinc Finger Motif Is the Minimal Region Required for Its Function in Vitro* , 2004, Journal of Biological Chemistry.

[17]  M. Hayman,et al.  The human Ski-interacting protein functionally substitutes for the yeast PRP45 gene. , 2004, Biochemical and biophysical research communications.

[18]  C. Restuccia,et al.  Selection, characterization and comparison of β-glucosidase from mould and yeasts employable for enological applications , 2004 .

[19]  W. Mäntele,et al.  Direct evidence for the interaction of stigmatellin with a protonated acidic group in the bc(1) complex from Saccharomyces cerevisiae as monitored by FTIR difference spectroscopy and 13C specific labeling. , 2004, Biochemistry.

[20]  S. Bailer,et al.  Asr1p, a Novel Yeast Ring/PHD Finger Protein, Signals Alcohol Stress to the Nucleus* , 2004, Journal of Biological Chemistry.

[21]  A. Heck,et al.  The selective utilization of substrates in vivo by the phosphatidylethanolamine and phosphatidylcholine biosynthetic enzymes Ept1p and Cpt1p in yeast , 2004, FEBS letters.

[22]  P. Hart,et al.  The Schizosaccharomyces pombe Pccs Protein Functions in Both Copper Trafficking and Metal Detoxification Pathways* , 2004, Journal of Biological Chemistry.

[23]  T. Foglia,et al.  LC/MS analysis and lipase modification of the sophorolipids produced by Rhodotorula bogoriensis** , 2004, Biotechnology Letters.

[24]  K. Nickerson,et al.  Defined Anaerobic Growth Medium for Studying Candida albicans Basic Biology and Resistance to Eight Antifungal Drugs , 2004, Antimicrobial Agents and Chemotherapy.

[25]  S. Ambudkar,et al.  Substitution of threonine-1351 in the multidrug transporter Cdr1p of Candida albicans results in hypersusceptibility to antifungal agents and threonine-1351 is essential for synergic effects of calcineurin inhibitor FK520. , 2004, The Journal of antimicrobial chemotherapy.

[26]  J. Nicaud,et al.  Lipid Accumulation, Lipid Body Formation, and Acyl Coenzyme A Oxidases of the Yeast Yarrowia lipolytica , 2004, Applied and Environmental Microbiology.

[27]  Naima Ahariz,et al.  Comparison of Different Methods of Isolation of DNA of Commonly Encountered Candida Species and Its Quantitation by Using a Real-Time PCR-Based Assay , 2004, Journal of Clinical Microbiology.

[28]  Norman W. Paton,et al.  A critical and Integrated View of the Yeast Interactome , 2004, Comparative and functional genomics.

[29]  A. Crolla,et al.  In‐line mixing for production of citric acid by Candida lipolytica grown on n‐paraffins , 2004 .

[30]  S. Dequin,et al.  Functional analysis of the ALD gene family of Saccharomyces cerevisiae during anaerobic growth on glucose: the NADP+-dependent Ald6p and Ald5p isoforms play a major role in acetate formation. , 2004, Microbiology.

[31]  J. Souciet,et al.  Recovery of a function involving gene duplication by retroposition in Saccharomyces cerevisiae. , 2004, Genome research.

[32]  D. Stigter Packaging of single DNA molecules by the yeast mitochondrial protein Abf2p: reinterpretation of recent single molecule experiments. , 2004, Biophysical Chemistry.

[33]  Nobumichi Furuta,et al.  Cdc50p, a protein required for polarized growth, associates with the Drs2p P-type ATPase implicated in phospholipid translocation in Saccharomyces cerevisiae. , 2004, Molecular biology of the cell.

[34]  J. Piškur,et al.  Yeast genome sequencing: the power of comparative genomics , 2004, Molecular microbiology.

[35]  Sherif Abou Elela,et al.  Cell cycle-dependent nuclear localization of yeast RNase III is required for efficient cell division. , 2004, Molecular biology of the cell.

[36]  M. Pfaller,et al.  Further Standardization of Broth Microdilution Methodology for In Vitro Susceptibility Testing of Caspofungin against Candida Species by Use of an International Collection of More than 3,000 Clinical Isolates , 2004, Journal of Clinical Microbiology.

[37]  J. Nuessen,et al.  ALS3 and ALS8 represent a single locus that encodes a Candida albicans adhesin; functional comparisons between Als3p and Als1p. , 2004, Microbiology.

[38]  L. Stateva,et al.  Genome-Wide Analysis of the Effects of Heat Shock on a Saccharomyces cerevisiae Mutant With a Constitutively Activated cAMP-Dependent Pathway , 2004, Comparative and functional genomics.

[39]  I. Macreadie,et al.  Over-production of dihydrofolate reductase leads to sulfa-dihydropteroate resistance in yeast. , 2004, FEMS microbiology letters.

[40]  T. Bączek Fractionation of peptides and identification of proteins from Saccharomyces cerevisiae in proteomics with the use of reversed-phase capillary liquid chromatography and pI-based approach. , 2004, Journal of pharmaceutical and biomedical analysis.

[41]  J. François,et al.  Combinatorial control by the protein kinases PKA, PHO85 and SNF1 of transcriptional induction of the Saccharomyces cerevisiae GSY2 gene at the diauxic shift , 2004, Molecular Genetics and Genomics.

[42]  R. Schneiter,et al.  Acyl-CoA-binding protein, Acb1p, is required for normal vacuole function and ceramide synthesis in Saccharomyces cerevisiae. , 2004, The Biochemical journal.

[43]  M. Lanzer,et al.  Targeting a DBL3γ domain of the Plasmodium falciparum erythrocyte membrane protein 1 to the surface of Saccharomyces cerevisiae , 2004, Parasitology Research.

[44]  D. Huber,et al.  Role of the 14–3–3 protein in carbon metabolism of the pathogenic yeast Candida albicans , 2004, Yeast.

[45]  Xin Jie Chen Sal1p, a Calcium-Dependent Carrier Protein That Suppresses an Essential Cellular Function Associated With the Aac2 Isoform of ADP/ATP Translocase in Saccharomyces cerevisiae , 2004, Genetics.

[46]  R. Prasad,et al.  Dosage-dependent functions of fatty acid desaturase Ole1p in growth and morphogenesis of Candida albicans. , 2004, Microbiology.

[47]  M. Kratchanova,et al.  Production and Characterization of an Exopolysaccharide by Yeast , 2004 .

[48]  Larissa Fernandes,et al.  The RAM1 gene encoding a protein-farnesyltransferase beta-subunit homologue is essential in Cryptococcus neoformans. , 2004, Microbiology.

[49]  Arun K. Ramani,et al.  Protein interaction networks from yeast to human. , 2004, Current opinion in structural biology.

[50]  Maristela Pereira,et al.  Molecular cloning and characterization of a cDNA encoding the Paracoccidioides brasiliensis l35 ribosomal protein , 2004 .

[51]  R. Korona,et al.  Experimental studies of deleterious mutation in Saccharomyces cerevisiae. , 2004, Research in microbiology.

[52]  G. Rödel,et al.  Saccharomyces cerevisiae translational activator Cbs2p is associated with mitochondrial ribosomes , 2004, Current Genetics.

[53]  E. Hurt,et al.  The Yeast Kinase Swe1 is Required for Proper Entry into Cell Cycle After Arrest Due to Ribosome Biogenesis and Protein Synthesis Defects , 2004, Cell cycle.

[54]  K. Esser,et al.  The mitochondrial IMP peptidase of yeast: functional analysis of domains and identification of Gut2 as a new natural substrate , 2004, Molecular Genetics and Genomics.

[55]  Katherine C. Chen,et al.  Cycling without the Cyclosome: Modeling a Yeast Strain Lacking the APC , 2004, Cell cycle.

[56]  P. T. Magee,et al.  Chromosome 1 trisomy compromises the virulence of Candida albicans , 2004, Molecular microbiology.

[57]  P. Agris,et al.  Sequence-Altered Peptide Adopts Optimum Conformation for Modification-Dependent Binding of the Yeast tRNAPhe Anticodon Domain , 2004, The Protein Journal.

[58]  Judith Berman,et al.  Candida albicans: A molecular revolution built on lessons from budding yeast , 2002, Nature Reviews Genetics.

[59]  E. Andaluz,et al.  An evaluation of the role of LIG4 in genomic instability and adaptive mutagenesis in Candida albicans. , 2002, FEMS yeast research.

[60]  J. Hegemann,et al.  A second set of loxP marker cassettes for Cre-mediated multiple gene knockouts in budding yeast. , 2002, Nucleic acids research.

[61]  B. Séraphin,et al.  The tandem affinity purification (TAP) method: a general procedure of protein complex purification. , 2001, Methods.

[62]  E. Rustchenko,et al.  Large circular and linear rDNA plasmids in Candida albicans , 2001, Yeast.

[63]  J. Sambrook,et al.  Molecular Cloning: A Laboratory Manual , 2001 .

[64]  H. Maki,et al.  Spontaneous loss of heterozygosity in diploid Saccharomyces cerevisiae cells. , 2000, Genetics.

[65]  K. Natter,et al.  A novel strategy for constructing N‐terminal chromosomal fusions to green fluorescent protein in the yeast Saccharomyces cerevisiae , 2000, FEBS letters.

[66]  S. Oliver,et al.  Exploring redundancy in the yeast genome: an improved strategy for use of the cre-loxP system. , 2000, Gene.

[67]  A. Antoni,et al.  A novel multi-purpose cassette for repeated integrative epitope tagging of genes in Saccharomyces cerevisiae. , 2000, Gene.

[68]  J. Mccusker,et al.  Three new dominant drug resistance cassettes for gene disruption in Saccharomyces cerevisiae , 1999, Yeast.

[69]  F. Sherman,et al.  Appearance and properties of L-sorbose-utilizing mutants of Candida albicans obtained on a selective plate. , 1999, Genetics.

[70]  K. Siegers,et al.  Epitope tagging of yeast genes using a PCR‐based strategy: more tags and improved practical routines , 1999, Yeast.

[71]  S. Filler,et al.  Unanticipated Heterogeneity in Growth Rate and Virulence among Candida albicans AAF1 Null Mutants , 1999, Infection and Immunity.

[72]  F. Sherman,et al.  Specific Chromosome Alterations in Fluconazole-Resistant Mutants of Candida albicans , 1999, Journal of bacteriology.

[73]  Xuewen Pan,et al.  Heterologous URA3MX cassettes for gene replacement in Saccharomyces cerevisiae , 1999, Yeast.

[74]  B. Séraphin,et al.  New constructs and strategies for efficient PCR‐based gene manipulations in yeast , 1998, Yeast.

[75]  L. Rodríguez,et al.  Development of an integrative DNA transformation system for the yeast Candida utilis. , 1998, FEMS microbiology letters.

[76]  P. Philippsen,et al.  Additional modules for versatile and economical PCR‐based gene deletion and modification in Saccharomyces cerevisiae , 1998, Yeast.

[77]  C. Nombela,et al.  Candida albicans: genetics, dimorphism and pathogenicity. , 1998, International microbiology : the official journal of the Spanish Society for Microbiology.

[78]  F. Sherman,et al.  Monosomy of a specific chromosome determines L-sorbose utilization: a novel regulatory mechanism in Candida albicans. , 1998, Proceedings of the National Academy of Sciences of the United States of America.

[79]  T. Biederer,et al.  Role of Cue1p in ubiquitination and degradation at the ER surface. , 1997, Science.

[80]  C. van Broeckhoven,et al.  Molecular biological characterization of an azole-resistant Candida glabrata isolate , 1997, Antimicrobial agents and chemotherapy.

[81]  P. Philippsen,et al.  Heterologous HIS3 Marker and GFP Reporter Modules for PCR‐Targeting in Saccharomyces cerevisiae , 1997, Yeast.

[82]  F. Sherman,et al.  Variation in assimilating functions occurs in spontaneous Candida albicans mutants having chromosomal alterations. , 1997, Microbiology.

[83]  C. Nombela,et al.  Understanding Candida albicans at the Molecular Level , 1996, Yeast.

[84]  G. Fink,et al.  Candida albicans strains heterozygous and homozygous for mutations in mitogen-activated protein kinase signaling components have defects in hyphal development. , 1996, Proceedings of the National Academy of Sciences of the United States of America.

[85]  D. Wolf,et al.  ER Degradation of a Misfolded Luminal Protein by the Cytosolic Ubiquitin-Proteasome Pathway , 1996, Science.

[86]  D. Tollervey,et al.  One-step PCR mediated strategy for the construction of conditionally expressed and epitope tagged yeast proteins. , 1996, Nucleic acids research.

[87]  Thomas Fiedler,et al.  A new efficient gene disruption cassette for repeated use in budding yeast , 1996, Nucleic Acids Res..

[88]  T. Biederer,et al.  Degradation of subunits of the Sec61p complex, an integral component of the ER membrane, by the ubiquitin‐proteasome pathway. , 1996, The EMBO journal.

[89]  A. Futcher,et al.  Use of polymerase chain reaction epitope tagging for protein tagging in Saccharomyces cerevisiae , 1995, Yeast.

[90]  P Manivasakam,et al.  Micro-homology mediated PCR targeting in Saccharomyces cerevisiae. , 1995, Nucleic acids research.

[91]  Karsten Melcher,et al.  A highly conserved ATPase protein as a mediator between acidic activation domains and the TATA-binding protein , 1995, Nature.

[92]  P. Philippsen,et al.  New heterologous modules for classical or PCR‐based gene disruptions in Saccharomyces cerevisiae , 1994, Yeast.

[93]  F. Sherman,et al.  Chromosomal alterations of Candida albicans are associated with the gain and loss of assimilating functions , 1994, Journal of bacteriology.

[94]  F. Sherman,et al.  Variations in the number of ribosomal DNA units in morphological mutants and normal strains of Candida albicans and in normal strains of Saccharomyces cerevisiae , 1993, Journal of bacteriology.

[95]  O. Ozier-Kalogeropoulos,et al.  A simple and efficient method for direct gene deletion in Saccharomyces cerevisiae. , 1993, Nucleic acids research.

[96]  D. Irwin,et al.  Isogenic strain construction and gene mapping in Candida albicans. , 1993, Genetics.

[97]  D. Howard,et al.  Multiple chromosomal and phenotypic changes in spontaneous mutants of Candida albicans. , 1993, Journal of general microbiology.

[98]  R. Schiestl,et al.  Improved method for high efficiency transformation of intact yeast cells. , 1992, Nucleic acids research.

[99]  E. P. Rustchenko-Bulgac Variations of Candida albicans electrophoretic karyotypes , 1991, Journal of bacteriology.

[100]  J. Cregg,et al.  Development of an integrative DNA transformation system for the yeast Candida tropicalis , 1990, Journal of bacteriology.

[101]  F. Sherman,et al.  Chromosomal rearrangements associated with morphological mutants provide a means for genetic variation of Candida albicans , 1990, Journal of bacteriology.

[102]  B. Sauer,et al.  Functional expression of the cre-lox site-specific recombination system in the yeast Saccharomyces cerevisiae. , 1987, Molecular and cellular biology.

[103]  G. Fink,et al.  A positive selection for mutants lacking orotidine-5′-phosphate decarboxylase activity in yeast: 5-fluoro-orotic acid resistance , 1984, Molecular and General Genetics MGG.

[104]  U. K. Laemmli,et al.  Cleavage of Structural Proteins during the Assembly of the Head of Bacteriophage T4 , 1970, Nature.

[105]  D. E. Bianchi SMALL COLONY VARIANT IN CANDIDA ALBICANS , 1961 .

[106]  J. Fuchs,et al.  Behaviour of nucleolus organizing regions (NORs) and nucleoli during mitotic and meiotic divisions in budding yeast , 2004, Chromosome Research.

[107]  R. Kooistra,et al.  The Kluyveromyces lactis PDR5 and RPL28 genes involved in drug resistance originate from chromosome VI , 2004 .

[108]  F. Sherman Getting started with yeast. , 2002, Methods in enzymology.

[109]  J. Hegemann,et al.  Gene disruption. , 2002, Methods in enzymology.

[110]  P. T. Magee,et al.  Recent developments in molecular genetics of Candida albicans. , 2000, Annual review of microbiology.

[111]  Stephen Albert Johnston,et al.  A highly conserved ATPase protein as a mediator between acidic activation domains and the TATA-binding protein , 1996, Nature.

[112]  R. S. Muir,et al.  Gene disruption with PCR products in Saccharomyces cerevisiae. , 1995, Gene.