Automated assignment of rotational spectra using artificial neural networks.

A typical broadband rotational spectrum may contain several thousand observable transitions, spanning many species. While these spectra often encode troves of chemical information, identifying and assigning the individual spectra can be challenging. Traditional approaches typically involve visually identifying a pattern. A more modern approach is to apply an automated fitting routine. In this approach, combinations of 3 transitions are searched by trial and error, to fit the A, B, and C rotational constants in a Watson-type Hamiltonian. In this work, we develop an alternative approach-to utilize machine learning to train a computer to recognize the patterns inherent in rotational spectra. Broadband high-resolution rotational spectra are perhaps uniquely suited for pattern recognition, assignment, and species identification using machine learning. Repeating patterns of transition frequencies and intensities are now routinely recorded in broadband chirped-pulse Fourier transform microwave experiments in which both the number of resolution elements and the dynamic range surpass 104. At the same time, these high-resolution spectra are extremely sensitive to molecular geometry with each polar species having a unique rotational spectrum. Here we train the feed forward neural network on thousands of rotational spectra that we calculate, using the rules of quantum mechanics, from randomly generated sets of rotational constants and other Hamiltonian parameters. Reasonable physical constraints are applied to these parameter sets, yet they need not belong to existing species. A trained neural network presented with a spectrum identifies its type (e.g., linear molecule, symmetric top, or asymmetric top) and infers the corresponding Hamiltonian parameters (rotational constants, distortion, and hyperfine constants). The classification and prediction times, about 160 µs and 50 µs, respectively, seem independent of the spectral complexity or the number of molecular parameters. We describe how the network works, provide benchmarking results, and discuss future directions.

[1]  Tao Liang,et al.  Infrared Stark and Zeeman spectroscopy of OH-CO: The entrance channel complex along the OH + CO → trans-HOCO reaction pathway. , 2016, The Journal of chemical physics.

[2]  Thomas J Penfold,et al.  Halogen bonding properties of 4-iodopyrazole and 4-bromopyrazole explored by rotational spectroscopy and ab initio calculations. , 2017, The Journal of chemical physics.

[3]  D. Plusquellic,et al.  Segmented chirped-pulse Fourier transform submillimeter spectroscopy for broadband gas analysis. , 2013, Optics express.

[4]  Daniel P. Zaleski,et al.  The broadband rotational spectrum of fully deuterated acetaldehyde (CD 3 CDO) in a CW supersonic expansion , 2017 .

[5]  Robert W. Field,et al.  Numerical pattern recognition analysis of acetylene dispersed fluorescence spectra , 1998 .

[6]  M. Meyer,et al.  Interpretation of infrared spectra by artificial neural networks , 1992 .

[7]  Levent Sagun,et al.  Energy landscapes for machine learning. , 2017, Physical chemistry chemical physics : PCCP.

[8]  Michael C. McCarthy,et al.  The SOLEIL view on sulfur rich oxides: The S2O bending mode ν2ν2 at 380 cm−1 and its analysis using an Automated Spectral Assignment Procedure (ASAP) , 2015 .

[9]  Michael C. McCarthy,et al.  Detection of the aromatic molecule benzonitrile (c-C6H5CN) in the interstellar medium , 2018, Science.

[10]  Mark E Tuckerman,et al.  Stochastic Neural Network Approach for Learning High-Dimensional Free Energy Surfaces. , 2017, Physical review letters.

[11]  Laurence Perreault Levasseur,et al.  Fast automated analysis of strong gravitational lenses with convolutional neural networks , 2017, Nature.

[12]  Nathan A. Seifert,et al.  The gas-phase structure of the asymmetric, trans-dinitrogen tetroxide (N2O4), formed by dimerization of nitrogen dioxide (NO2), from rotational spectroscopy and ab initio quantum chemistry. , 2017, The Journal of chemical physics.

[13]  Walter Gordy,et al.  Microwave Molecular Spectra , 1970 .

[14]  Brooks H. Pate,et al.  A Ka-band chirped-pulse Fourier transform microwave spectrometer , 2010 .

[15]  Gordon G. Brown,et al.  A broadband Fourier transform microwave spectrometer based on chirped pulse excitation. , 2008, The Review of scientific instruments.

[16]  Daniel P Zaleski,et al.  Geometry of an Isolated Dimer of Imidazole Characterised by Rotational Spectroscopy and Ab Initio Calculations. , 2016, Chemphyschem : a European journal of chemical physics and physical chemistry.

[17]  Alexandre Tkatchenko,et al.  Quantum-chemical insights from deep tensor neural networks , 2016, Nature Communications.

[18]  Cristina Puzzarini,et al.  The Lamb-dip spectrum of methylcyanide: Precise rotational transition frequencies and improved ground-state rotational parameters , 2006 .

[19]  Don H. Johnson,et al.  Gauss and the history of the fast Fourier transform , 1984, IEEE ASSP Magazine.

[20]  David Patterson,et al.  Continuous probing of cold complex molecules with infrared frequency comb spectroscopy , 2016, Nature.

[21]  Zbigniew Kisiel,et al.  Corannulene and its complex with water: a tiny cup of water. , 2017, Physical chemistry chemical physics : PCCP.

[22]  Brooks H. Pate,et al.  Broadband Fourier transform rotational spectroscopy for structure determination: The water heptamer , 2013 .

[23]  B. Vowinkel,et al.  Pure Rotational Spectrum of HCN in the Terahertz Region: Use of a New Planar Schottky Diode Multiplier , 2000 .

[24]  Lei Wang,et al.  Discovering phase transitions with unsupervised learning , 2016, 1606.00318.

[25]  S Suhai,et al.  Neural-network analysis of the vibrational spectra of N-acetyl L-alanyl N'-methyl amide conformational states. , 2001, Physical review. E, Statistical, nonlinear, and soft matter physics.

[26]  Johann Gasteiger,et al.  Neural nets for mass and vibrational spectra , 1993 .

[27]  David P Tew,et al.  Cooperative hydrogen bonds form a pseudocycle stabilizing an isolated complex of isocyanic acid with urea. , 2017, Physical chemistry chemical physics : PCCP.

[28]  Roger G. Melko,et al.  Learning Thermodynamics with Boltzmann Machines , 2016, ArXiv.

[29]  Valerio Lattanzi,et al.  Molecular polymorphism: microwave spectra, equilibrium structures, and an astronomical investigation of the HNCS isomeric family. , 2016, Physical chemistry chemical physics : PCCP.

[30]  Jean Demaison,et al.  Microwave spectra of propyne and its [13C] isotopic species: Refined molecular structure of propyne , 1978 .

[31]  Ramesh Raskar,et al.  Machine learning approaches for large scale classification of produce , 2018, Scientific Reports.

[32]  Shane Legg,et al.  Human-level control through deep reinforcement learning , 2015, Nature.

[33]  Melanie Schnell,et al.  Broadband Rotational Spectroscopy for Molecular Structure and Dynamics Studies , 2012 .

[34]  Daniel A. Obenchain,et al.  A Study of the Conformational Isomerism of 1-Iodobutane by High Resolution Rotational Spectroscopy , 2017 .

[35]  Daniel P Zaleski,et al.  A perspective on chemistry in transient plasma from broadband rotational spectroscopy. , 2014, Physical chemistry chemical physics : PCCP.

[36]  Vincenzo Barone,et al.  VMS-ROT: A New Module of the Virtual Multifrequency Spectrometer for Simulation, Interpretation, and Fitting of Rotational Spectra , 2017, Journal of chemical theory and computation.

[37]  Jean Demaison,et al.  The Millimeter Wave Rotational Spectra of Carbonyl Sulfide , 1980 .

[38]  José Cernicharo,et al.  Waveguide CP-FTMW and millimeter wave spectra of s-cis- and s-trans-acrylic acid , 2015 .

[39]  Nicholas R. Walker,et al.  Determination of Nuclear Spin-rotation Coupling Constants in CF3I by Chirped-pulse Fourier Transform Microwave Spectroscopy , 2010 .

[40]  Demis Hassabis,et al.  Mastering the game of Go with deep neural networks and tree search , 2016, Nature.

[41]  Winnewisser,et al.  The Millimeter- and Submillimeter-Wave Spectrum of HC(3)N in the Ground and Vibrationally Excited States. , 2000, Journal of molecular spectroscopy.

[42]  Shiming Xiang,et al.  Vehicle Detection in Satellite Images by Hybrid Deep Convolutional Neural Networks , 2014, IEEE Geoscience and Remote Sensing Letters.

[43]  Johan Bollen,et al.  Twitter mood predicts the stock market , 2010, J. Comput. Sci..

[44]  R. Q. Fugate,et al.  Use of a neural network to control an adaptive optics system for an astronomical telescope , 1991, Nature.

[45]  Geoffrey E. Hinton,et al.  Deep Learning , 2015, Nature.

[46]  Brooks H. Pate,et al.  Structures of Cage, Prism, and Book Isomers of Water Hexamer from Broadband Rotational Spectroscopy , 2012, Science.

[47]  Melanie Schnell,et al.  Structure Determination, Conformational Flexibility, Internal Dynamics, and Chiral Analysis of Pulegone and Its Complex with Water. , 2018, Chemistry.

[48]  Ming Yang,et al.  3D Convolutional Neural Networks for Human Action Recognition , 2010, IEEE Transactions on Pattern Analysis and Machine Intelligence.

[49]  Kirill Prozument,et al.  Pseudo-equilibrium geometry of HNO determined by an E-Band CP-FTmmW spectrometer , 2017 .

[50]  J. U. Thomsen,et al.  Pattern recognition of the 1H NMR spectra of sugar alditols using a neural network , 1989 .

[51]  Jens-Uwe Grabow,et al.  The Conformational Map of Volatile Anesthetics: Enflurane Revisited. , 2016, Chemistry.

[52]  Takeo Kanade,et al.  Neural Network-Based Face Detection , 1998, IEEE Trans. Pattern Anal. Mach. Intell..

[53]  Gui-Song Xia,et al.  Transferring Deep Convolutional Neural Networks for the Scene Classification of High-Resolution Remote Sensing Imagery , 2015, Remote. Sens..

[54]  G. Winnewisser,et al.  Rotational spectra of the 13C and 15N isotopic species of cyanoacetylene , 1977 .

[55]  Tara N. Sainath,et al.  Deep Neural Networks for Acoustic Modeling in Speech Recognition: The Shared Views of Four Research Groups , 2012, IEEE Signal Processing Magazine.

[56]  David Patterson,et al.  Automated microwave double resonance spectroscopy: A tool to identify and characterize chemical compounds. , 2016, The Journal of chemical physics.

[57]  Brooks H. Pate,et al.  Measuring Picosecond Isomerization Kinetics via Broadband Microwave Spectroscopy , 2008, Science.

[58]  Wen Chao,et al.  High resolution quantum cascade laser spectroscopy of the simplest Criegee intermediate, CH2OO, between 1273 cm-1 and 1290 cm-1. , 2017, The Journal of chemical physics.

[59]  Michio Takami,et al.  Microwave Spectrum of Chloroacetylene in Ground and Excited Vibrational States , 1978 .

[60]  Brooks H. Pate,et al.  The rotational spectrum of epifluorohydrin measured by chirped-pulse Fourier transform microwave spectroscopy , 2006 .

[61]  Melanie Schnell,et al.  Flexibility unleashed in acyclic monoterpenes: conformational space of citronellal revealed by broadband rotational spectroscopy. , 2016, Physical chemistry chemical physics : PCCP.

[62]  P. Manju,et al.  Fast machine-learning online optimization of ultra-cold-atom experiments , 2015, Scientific Reports.

[63]  Branko Ruscic,et al.  Time-Resolved Kinetic Chirped-Pulse Rotational Spectroscopy in a Room-Temperature Flow Reactor. , 2017, The journal of physical chemistry letters.

[64]  Fernando Castaño,et al.  Probing the C-H⋅⋅⋅π weak hydrogen bond in anesthetic binding: the sevoflurane-benzene cluster. , 2014, Angewandte Chemie.

[65]  Brooks H. Pate,et al.  Hydrogen bond cooperativity and the three-dimensional structures of water nonamers and decamers. , 2014, Angewandte Chemie.

[66]  Arthur G. Maki,et al.  Microwave Spectra of Molecules of Astrophysical Interest VI. Carbonyl Sulfide and Hydrogen Cyanide , 1974 .

[67]  Daniel P Zaleski,et al.  Highly Unsaturated Platinum and Palladium Carbenes PtC3 and PdC3 Isolated and Characterized in the Gas Phase , 2016, Angewandte Chemie.

[68]  Amanda L. Steber,et al.  AUTOFIT, an automated fitting tool for broadband rotational spectra, and applications to 1-hexanal , 2015 .

[69]  Holger S. P. Müller,et al.  The Submillimeter-wave Spectrum of Propyne, CH3CCH , 2000 .

[70]  Dong Yu,et al.  Context-Dependent Pre-Trained Deep Neural Networks for Large-Vocabulary Speech Recognition , 2012, IEEE Transactions on Audio, Speech, and Language Processing.

[71]  Michael Gastegger,et al.  Machine learning molecular dynamics for the simulation of infrared spectra† †Electronic supplementary information (ESI) available. See DOI: 10.1039/c7sc02267k , 2017, Chemical science.

[72]  Michael Schmitt,et al.  Application of genetic algorithms in automated assignments of high-resolution spectra , 2006 .

[73]  R. Feynman Simulating physics with computers , 1999 .

[74]  Timothy S. Zwier,et al.  Broadband multi-resonant strong field coherence breaking as a tool for single isomer microwave spectroscopy , 2016 .

[75]  Colin M Western,et al.  Automatic assignment and fitting of spectra with pgopher. , 2017, Physical chemistry chemical physics : PCCP.

[76]  E B Wilson,et al.  Microwave spectroscopy in chemistry. , 1968, Science.

[77]  Brian C. Dian,et al.  Dissociation Pathways of 2,3-Dihydrofuran Measured by Chirped-Pulse Fourier Transform Microwave Spectroscopy , 2010 .

[78]  Zbigniew Kisiel,et al.  Capturing the Elusive Water Trimer from the Stepwise Growth of Water on the Surface of the Polycyclic Aromatic Hydrocarbon Acenaphthene. , 2017, The journal of physical chemistry letters.

[79]  John C. Pearson,et al.  Rotational spectra of isotopic species of methyl cyanide, CH3CN, in their ground vibrational states up to terahertz frequencies , 2009, 0910.3111.

[80]  Holger S. P. Müller,et al.  Rotational Spectra of Selected Isotopic Species of Vinyl Cyanide: Molecular Structure and Quadrupole Hyperfine Structure , 1997 .

[81]  Amanda L. Steber,et al.  A global study of the conformers of 1,2-propanediol and new vibrationally excited states , 2017 .

[82]  Brooks H. Pate,et al.  The pure rotational spectrum of glycolaldehyde isotopologues observed in natural abundance , 2013 .

[83]  G. B. Park,et al.  Perspective: The first ten years of broadband chirped pulse Fourier transform microwave spectroscopy. , 2016, The Journal of chemical physics.

[84]  Oscar Martinez,et al.  Detection of two highly stable silicon nitrides: HSiNSi and H3SiNSi. , 2013, The journal of physical chemistry. A.

[85]  Steven T. Shipman,et al.  Room temperature chirped-pulse Fourier transform microwave spectroscopy of anisole , 2011 .

[86]  Stefan Grimme,et al.  Intramolecular London Dispersion Interaction Effects on Gas-Phase and Solid-State Structures of Diamondoid Dimers. , 2017, Journal of the American Chemical Society.

[87]  Carolyn S. Brauer,et al.  The rotational spectrum of acrylonitrile up to 1.67 THz , 2009 .

[88]  D. Tew,et al.  Distortions of ethyne when complexed with a cuprous or argentous halide: the rotational spectrum of C2H2···CuF , 2015, Physical chemistry chemical physics : PCCP.

[89]  Matthias Troyer,et al.  Solving the quantum many-body problem with artificial neural networks , 2016, Science.