Genomic signals of selection predict climate-driven population declines in a migratory bird
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R. Harrigan | T. Smith | R. Bay | K. Ruegg | H. Gibbs | Thomas B Smith | Ryan J Harrigan | Rachael A Bay | Vinh Le Underwood | H Lisle Gibbs | Kristen Ruegg | V. L. Underwood | T. B. Smith
[1] P. Leberg,et al. Breeding Distributions of North American Bird Species Moving North as a Result of Climate Change , 2007, Conservation biology : the journal of the Society for Conservation Biology.
[2] K. Hobson,et al. Phylogeography and genetic structure of northern populations of the yellow warbler (Dendroica petechia) , 2000, Molecular ecology.
[3] Peter L. Ralph,et al. Predicting Responses to Contemporary Environmental Change Using Evolutionary Response Architectures , 2017, The American Naturalist.
[4] C. Both,et al. Climate change and population declines in a long-distance migratory bird , 2006, Nature.
[5] G. Luikart,et al. RAD Capture (Rapture): Flexible and Efficient Sequence-Based Genotyping , 2015, Genetics.
[6] Guillaume Bouchard,et al. Testing for Associations between Loci and Environmental Gradients Using Latent Factor Mixed Models , 2012, Molecular biology and evolution.
[7] A. Fidler. Personality-Associated Genetic Variation in Birds and Its Possible Significance for Avian Evolution, Conservation, and Welfare , 2011 .
[8] G. Somero,et al. The physiology of climate change: how potentials for acclimatization and genetic adaptation will determine ‘winners’ and ‘losers’ , 2010, Journal of Experimental Biology.
[9] Michael J. Fogarty,et al. Marine Taxa Track Local Climate Velocities , 2013, Science.
[10] Chengquan Huang,et al. Global, 30-m resolution continuous fields of tree cover: Landsat-based rescaling of MODIS vegetation continuous fields with lidar-based estimates of error , 2013, Int. J. Digit. Earth.
[11] Brett R. Scheffers,et al. The broad footprint of climate change from genes to biomes to people , 2016, Science.
[12] W. Link,et al. The North American Breeding Bird Survey Results and Analysis , 1997 .
[13] M. Berriman,et al. REAPR: a universal tool for genome assembly evaluation , 2013, Genome Biology.
[14] Ole Schulz-Trieglaff,et al. NxTrim: optimized trimming of Illumina mate pair reads , 2014, bioRxiv.
[15] J. Vik,et al. Rapid Advance of Spring Arrival Dates in Long-Distance Migratory Birds , 2006, Science.
[16] Rolf Apweiler,et al. InterProScan - an integration platform for the signature-recognition methods in InterPro , 2001, Bioinform..
[17] K. Hobson,et al. Limited differentiation in microsatellite DNA variation among northern populations of the yellow warbler: evidence for male‐biased gene flow? , 2000, Molecular ecology.
[18] Stephen R Keller,et al. Ecological genomics meets community-level modelling of biodiversity: mapping the genomic landscape of current and future environmental adaptation. , 2015, Ecology letters.
[19] B. Kempenaers,et al. Haplotype structure, adaptive history and associations with exploratory behaviour of the DRD4 gene region in four great tit (Parus major) populations , 2013, Molecular ecology.
[20] K. Hobson,et al. Integrated Analysis of Genetic, Stable Isotope, and Banding Data Reveal Migratory Connectivity and Flyways in the Northern Yellow Warbler (Dendroica petechia; aestiva Group) , 2006 .
[21] Angel Amores,et al. Stacks: an analysis tool set for population genomics , 2013, Molecular ecology.
[22] D. Schluter,et al. Adaptation from standing genetic variation. , 2008, Trends in ecology & evolution.
[23] Joy Bergelson,et al. References and Notes Supporting Online Material Adaptation to Climate across the Arabidopsis Thaliana Genome , 2022 .
[24] S. Palumbi,et al. Multilocus Adaptation Associated with Heat Resistance in Reef-Building Corals , 2014, Current Biology.
[25] G. Yohe,et al. A globally coherent fingerprint of climate change impacts across natural systems , 2003, Nature.
[26] M. Eens,et al. The relationship between DRD4 polymorphisms and phenotypic correlations of behaviors in the collared flycatcher , 2014, Ecology and evolution.
[27] M. C. Urban. Accelerating extinction risk from climate change , 2015, Science.
[28] T. Juenger,et al. Genome-environment associations in sorghum landraces predict adaptive traits , 2015, Science Advances.
[29] Steven L Salzberg,et al. Fast gapped-read alignment with Bowtie 2 , 2012, Nature Methods.
[30] S. Yeaman,et al. Adaptation, migration or extirpation: climate change outcomes for tree populations , 2008, Evolutionary applications.
[31] Stephen J. Smith,et al. Gradient forests: calculating importance gradients on physical predictors. , 2012, Ecology.
[32] Walter Pirovano,et al. BIOINFORMATICS APPLICATIONS , 2022 .
[33] C. Parmesan. Ecological and Evolutionary Responses to Recent Climate Change , 2006 .
[34] David H. Alexander,et al. Fast model-based estimation of ancestry in unrelated individuals. , 2009, Genome research.
[35] Gonçalo R. Abecasis,et al. The variant call format and VCFtools , 2011, Bioinform..
[36] Susanne Akesson,et al. The genetics of migration on the move. , 2011, Trends in ecology & evolution.
[37] J. L. Parra,et al. Very high resolution interpolated climate surfaces for global land areas , 2005 .
[38] J. Goudet. HIERFSTAT , a package for R to compute and test hierarchical F -statistics , 2005 .
[39] K. Shine,et al. Intergovernmental panel on Climate change (IPCC),in encyclopedia of Enviroment and society,Vol.3 , 2007 .
[40] Sofia M. C. Robb,et al. MAKER: an easy-to-use annotation pipeline designed for emerging model organism genomes. , 2007, Genome research.
[41] C. Both,et al. Effects of Spring Temperatures on the Strength of Selection on Timing of Reproduction in a Long-Distance Migratory Bird , 2015, PLoS biology.