Proteome analysis of the HIV-1 Gag interactome.

[1]  W. Sundquist,et al.  Membrane fission reactions of the mammalian ESCRT pathway. , 2013, Annual review of biochemistry.

[2]  B. Torbett,et al.  Heat shock protein 90AB1 and hyperthermia rescue infectivity of HIV with defective cores. , 2013, Virology.

[3]  Damian Szklarczyk,et al.  STRING v9.1: protein-protein interaction networks, with increased coverage and integration , 2012, Nucleic Acids Res..

[4]  D. Schriemer,et al.  Characterization of Staufen1 Ribonucleoproteins by Mass Spectrometry and Biochemical Analyses Reveal the Presence of Diverse Host Proteins Associated with Human Immunodeficiency Virus Type 1 , 2012, Front. Microbio..

[5]  Kuan-Teh Jeang,et al.  MicroRNAs and HIV-1: Complex Interactions* , 2012, The Journal of Biological Chemistry.

[6]  M. Malim,et al.  HIV-1 Replication and APOBEC3 Antiviral Activity Are Not Regulated by P Bodies , 2012, Journal of Virology.

[7]  S. Nekhai,et al.  Virus-producing cells determine the host protein profiles of HIV-1 virion cores , 2012, Retrovirology.

[8]  K. C. Klein,et al.  HIV-1 Gag co-opts a cellular complex containing DDX6, a helicase that facilitates capsid assembly , 2012, The Journal of cell biology.

[9]  W. Sundquist,et al.  HIV-1 assembly, budding, and maturation. , 2012, Cold Spring Harbor perspectives in medicine.

[10]  John H. Morris,et al.  Global landscape of HIV–human protein complexes , 2011, Nature.

[11]  B. Chabot,et al.  Differential effects of hnRNP D/AUF1 isoforms on HIV-1 gene expression , 2011, Nucleic acids research.

[12]  S. Xiang,et al.  Identification of Molecular Determinants from Moloney Leukemia Virus 10 Homolog (MOV10) Protein for Virion Packaging and Anti-HIV-1 Activity* , 2011, The Journal of Biological Chemistry.

[13]  Robert D. Finn,et al.  InterPro in 2011: new developments in the family and domain prediction database , 2011, Nucleic acids research.

[14]  Theresa L. Chang.  HIV-Host Interactions , 2011 .

[15]  H. Kräusslich,et al.  The Cellular Protein Lyric Interacts with HIV-1 Gag , 2011, Journal of Virology.

[16]  C. Lecellier,et al.  Retroviral GAG proteins recruit AGO2 on viral RNAs without affecting RNA accumulation and translation , 2011, Nucleic acids research.

[17]  L. Twyffels,et al.  Shuttling SR proteins: more than splicing factors , 2011, The FEBS journal.

[18]  Yong-tang Zheng,et al.  Zinc-finger antiviral protein inhibits HIV-1 infection by selectively targeting multiply spliced viral mRNAs for degradation , 2011, Proceedings of the National Academy of Sciences.

[19]  Lela Lackey,et al.  Human and Rhesus APOBEC3D, APOBEC3F, APOBEC3G, and APOBEC3H Demonstrate a Conserved Capacity To Restrict Vif-Deficient HIV-1 , 2011, Journal of Virology.

[20]  V. Chukkapalli,et al.  Molecular determinants that regulate plasma membrane association of HIV-1 Gag. , 2011, Journal of molecular biology.

[21]  R. D’Aquila,et al.  Filamin A Protein Interacts with Human Immunodeficiency Virus Type 1 Gag Protein and Contributes to Productive Particle Assembly* , 2011, The Journal of Biological Chemistry.

[22]  P. Joshi,et al.  Impaired Infectivity of Ritonavir-resistant HIV Is Rescued by Heat Shock Protein 90AB1 , 2011, The Journal of Biological Chemistry.

[23]  O. Fackler,et al.  How HIV Takes Advantage of the Cytoskeleton in Entry and Replication , 2011, Viruses.

[24]  L. Xing,et al.  Coordinate roles of Gag and RNA helicase A in promoting the annealing of formula to HIV-1 RNA. , 2011, Journal of virology.

[25]  V. Deretic,et al.  Autophagy and HIV. , 2010, Seminars in cell & developmental biology.

[26]  Sabine S. Lange,et al.  Identification of phosphorylation-dependent interaction partners of the adapter protein ADAP using quantitative mass spectrometry: SILAC vs (18)O-labeling. , 2010, Journal of proteome research.

[27]  Narasimhan J. Venkatachari,et al.  P Body-Associated Protein Mov10 Inhibits HIV-1 Replication at Multiple Stages , 2010, Journal of Virology.

[28]  Marvin J Fritzler,et al.  Cytoplasmic ribonucleoprotein (RNP) bodies and their relationship to GW/P bodies. , 2010, The international journal of biochemistry & cell biology.

[29]  A. Ono,et al.  Relationships between plasma membrane microdomains and HIV‐1 assembly , 2010, Biology of the cell.

[30]  Chris M. Brown,et al.  Live cell visualization of the interactions between HIV-1 Gag and the cellular RNA-binding protein Staufen1 , 2010, Retrovirology.

[31]  M. Malim,et al.  SRp40 and SRp55 Promote the Translation of Unspliced Human Immunodeficiency Virus Type 1 RNA , 2010, Journal of Virology.

[32]  W. Fu,et al.  Moloney Leukemia Virus 10 (MOV10) Protein Inhibits Retrovirus Replication* , 2010, The Journal of Biological Chemistry.

[33]  Stephen A. Rawlings,et al.  Perturbation of the P-Body Component Mov10 Inhibits HIV-1 Infectivity , 2010, PloS one.

[34]  L. Ajamian,et al.  Novel Staufen1 ribonucleoproteins prevent formation of stress granules but favour encapsidation of HIV-1 genomic RNA , 2010, Journal of Cell Science.

[35]  T. Pan,et al.  Profiling non-lysyl tRNAs in HIV-1. , 2010, RNA.

[36]  K. Musier-Forsyth,et al.  Formation of the tRNALys packaging complex in HIV‐1 , 2010, FEBS letters.

[37]  H. Erfle,et al.  From experimental setup to bioinformatics: An RNAi screening platform to identify host factors involved in HIV‐1 replication , 2010, Biotechnology journal.

[38]  N. Gov,et al.  Retroviral assembly and budding occur through an actin-driven mechanism. , 2009, Biophysical journal.

[39]  Peter J. Shepard,et al.  The SR protein family , 2009, Genome Biology.

[40]  V. Deretic,et al.  Autophagy pathway intersects with HIV-1 biosynthesis and regulates viral yields in macrophages , 2009, The Journal of cell biology.

[41]  Hong Cao,et al.  Cellular microRNA and P bodies modulate host-HIV-1 interactions. , 2009, Molecular cell.

[42]  L. Abrahamyan,et al.  Intracellular Transport of Human Immunodeficiency Virus Type 1 Genomic RNA and Viral Production Are Dependent on Dynein Motor Function and Late Endosome Positioning* , 2009, Journal of Biological Chemistry.

[43]  Kuan-Teh Jeang,et al.  A Genome-wide Short Hairpin RNA Screening of Jurkat T-cells for Human Proteins Contributing to Productive HIV-1 Replication* , 2009, The Journal of Biological Chemistry.

[44]  S. Pennington,et al.  In vitro nuclear interactome of the HIV-1 Tat protein , 2009, Retrovirology.

[45]  Amy S. Espeseth,et al.  Host Cell Factors in HIV Replication: Meta-Analysis of Genome-Wide Studies , 2009, PLoS pathogens.

[46]  David L Robertson,et al.  HIV-host interactions: a map of viral perturbation of the host system. , 2009, AIDS.

[47]  Y. Lévy,et al.  Suppression of HIV-1 replication by microRNA effectors , 2009, Retrovirology.

[48]  Xiang-Dong Fu,et al.  Regulation of SR protein phosphorylation and alternative splicing by modulating kinetic interactions of SRPK1 with molecular chaperones. , 2009, Genes & development.

[49]  David L Robertson,et al.  Cataloguing the HIV type 1 human protein interaction network. , 2008, AIDS research and human retroviruses.

[50]  M. Mann,et al.  MaxQuant enables high peptide identification rates, individualized p.p.b.-range mass accuracies and proteome-wide protein quantification , 2008, Nature Biotechnology.

[51]  Brad T. Sherman,et al.  Bioinformatics enrichment tools: paths toward the comprehensive functional analysis of large gene lists , 2008, Nucleic acids research.

[52]  Amy S. Espeseth,et al.  Genome-scale RNAi screen for host factors required for HIV replication. , 2008, Cell host & microbe.

[53]  M. Caputi,et al.  Role of Cellular RNA Processing Factors in Human Immunodeficiency Virus Type 1 mRNA Metabolism, Replication, and Infectivity , 2008, Journal of Virology.

[54]  E. Wahle,et al.  Control of c-myc mRNA stability by IGF2BP1-associated cytoplasmic RNPs. , 2008, RNA.

[55]  F. Boisvert,et al.  Identifying specific protein interaction partners using quantitative mass spectrometry and bead proteomes , 2008, The Journal of cell biology.

[56]  Donna R. Maglott,et al.  Human immunodeficiency virus type 1, human protein interaction database at NCBI , 2008, Nucleic Acids Res..

[57]  R. König,et al.  Global Analysis of Host-Pathogen Interactions that Regulate Early-Stage HIV-1 Replication , 2008, Cell.

[58]  R. Berro,et al.  Kinesin KIF4 Regulates Intracellular Trafficking and Stability of the Human Immunodeficiency Virus Type 1 Gag Polyprotein , 2008, Journal of Virology.

[59]  Matthias Mann,et al.  High confidence determination of specific protein-protein interactions using quantitative mass spectrometry. , 2008, Current opinion in biotechnology.

[60]  J. Martin-Serrano,et al.  Differential requirements for Alix and ESCRT-III in cytokinesis and HIV-1 release , 2008, Proceedings of the National Academy of Sciences.

[61]  K. Strebel,et al.  HIV-1 Vif, APOBEC, and Intrinsic Immunity , 2008, Retrovirology.

[62]  S. Goff,et al.  Host proteins interacting with the Moloney murine leukemia virus integrase : Multiple transcriptional regulators and chromatin binding factors , 2016 .

[63]  Chen Liang,et al.  The requirement of the DEAD-box protein DDX24 for the packaging of human immunodeficiency virus type 1 RNA. , 2008, Virology.

[64]  Luc DesGroseillers,et al.  The host protein Staufen1 interacts with the Pr55Gag zinc fingers and regulates HIV-1 assembly via its N-terminus , 2008, Retrovirology.

[65]  L. Rong,et al.  Insulin-Like Growth Factor II mRNA Binding Protein 1 Associates with Gag Protein of Human Immunodeficiency Virus Type 1, and Its Overexpression Affects Virus Assembly , 2008, Journal of Virology.

[66]  M. Cristina Cardoso,et al.  A Versatile Nanotrap for Biochemical and Functional Studies with Fluorescent Fusion Proteins*S , 2008, Molecular & Cellular Proteomics.

[67]  J. Lieberman,et al.  Identification of Host Proteins Required for HIV Infection Through a Functional Genomic Screen , 2007, Science.

[68]  J. Martin-Serrano.  The Role of Ubiquitin in Retroviral Egress , 2007, Traffic.

[69]  S. Goff,et al.  Retroviral proteins that interact with the host cell cytoskeleton. , 2007, Current opinion in immunology.

[70]  E. Bertrand,et al.  The clathrin adaptor complex AP-1 binds HIV-1 and MLV Gag and facilitates their budding. , 2007, Molecular biology of the cell.

[71]  A. Krogh,et al.  Molecular Composition of IMP1 Ribonucleoprotein Granules*S , 2007, Molecular & Cellular Proteomics.

[72]  H. Göttlinger,et al.  Potent Rescue of Human Immunodeficiency Virus Type 1 Late Domain Mutants by ALIX/AIP1 Depends on Its CHMP4 Binding Site , 2007, Journal of Virology.

[73]  Pascal Barbry,et al.  Suppression of MicroRNA-Silencing Pathway by HIV-1 During Virus Replication , 2007, Science.

[74]  Clare Jolly,et al.  Requirement for an Intact T-Cell Actin and Tubulin Cytoskeleton for Efficient Assembly and Spread of Human Immunodeficiency Virus Type 1 , 2007, Journal of Virology.

[75]  D. Purcell,et al.  Small Interfering RNAs against the TAR RNA Binding Protein, TRBP, a Dicer Cofactor, Inhibit Human Immunodeficiency Virus Type 1 Long Terminal Repeat Expression and Viral Production , 2007, Journal of Virology.

[76]  M. Marin,et al.  The Anti-HIV-1 Editing Enzyme APOBEC3G Binds HIV-1 RNA and Messenger RNAs That Shuttle between Polysomes and Stress Granules* , 2006, Journal of Biological Chemistry.

[77]  K. Nagashima,et al.  Proteomic and Biochemical Analysis of Purified Human Immunodeficiency Virus Type 1 Produced from Infected Monocyte-Derived Macrophages , 2006, Journal of Virology.

[78]  H. Kräusslich,et al.  Interactions of human retroviruses with the host cell cytoskeleton. , 2006, Current opinion in microbiology.

[79]  M. Hagiwara,et al.  Utilization of host SR protein kinases and RNA-splicing machinery during viral replication. , 2006, Proceedings of the National Academy of Sciences of the United States of America.

[80]  J. Sodroski,et al.  Functional Replacement of the RING, B-Box 2, and Coiled-Coil Domains of Tripartite Motif 5α (TRIM5α) by Heterologous TRIM Domains , 2006, Journal of Virology.

[81]  Chen Liang,et al.  Association of RNA Helicase A with Human Immunodeficiency Virus Type 1 Particles* , 2006, Journal of Biological Chemistry.

[82]  Joseph Sodroski,et al.  Specific recognition and accelerated uncoating of retroviral capsids by the TRIM5alpha restriction factor. , 2006, Proceedings of the National Academy of Sciences of the United States of America.

[83]  A. Mouland,et al.  The retrovirus RNA trafficking granule: from birth to maturity , 2006, Retrovirology.

[84]  P. Kiser,et al.  Basic Residues in the Nucleocapsid Domain of Gag Are Required for Interaction of HIV-1 Gag with ABCE1 (HP68), a Cellular Protein Important for HIV-1 Capsid Assembly* , 2006, Journal of Biological Chemistry.

[85]  Sue Povey,et al.  The HUGO Gene Nomenclature Database, 2006 updates , 2005, Nucleic Acids Res..

[86]  Ileana M Cristea,et al.  Fluorescent Proteins as Proteomic Probes*S , 2005, Molecular & Cellular Proteomics.

[87]  P. Strappe,et al.  HIV‐1 Gag–RNA Interaction Occurs at a Perinuclear/Centrosomal Site; Analysis by Confocal Microscopy and FRET , 2005, Traffic : the International Journal of Intracellular Transport.

[88]  R. Shiekhattar,et al.  TRBP recruits the Dicer complex to Ago2 for microRNA processing and gene silencing , 2005, Nature.

[89]  R. Herrmann,et al.  Experimental proof for a signal peptidase I like activity in Mycoplasma pneumoniae, but absence of a gene encoding a conserved bacterial type I SPase , 2005, The FEBS journal.

[90]  J. Darlix,et al.  Dual effect of the SR proteins ASF/SF2, SC35 and 9G8 on HIV-1 RNA splicing and virion production , 2005, Retrovirology.

[91]  T. R. Peters,et al.  AP-3 Directs the Intracellular Trafficking of HIV-1 Gag and Plays a Key Role in Particle Assembly , 2005, Cell.

[92]  Brian Raught,et al.  Advances in protein complex analysis using mass spectrometry , 2005, The Journal of physiology.

[93]  D. Richter,et al.  Characterization of Staufen 1 ribonucleoprotein complexes. , 2004, The Biochemical journal.

[94]  D. Pérez-Caballero,et al.  APOBEC3G Incorporation into Human Immunodeficiency Virus Type 1 Particles , 2004, Journal of Virology.

[95]  B. Cullen,et al.  Specific packaging of APOBEC3G into HIV-1 virions is mediated by the nucleocapsid domain of the gag polyprotein precursor. , 2004, Virology.

[96]  A. Lever,et al.  Human Immunodeficiency Virus Type 2 Gag Interacts Specifically with PRP4, a Serine-Threonine Kinase, and Inhibits Phosphorylation of Splicing Factor SF2 , 2004, Journal of Virology.

[97]  Oliver T. Fackler,et al.  Construction and Characterization of a Fluorescently Labeled Infectious Human Immunodeficiency Virus Type 1 Derivative , 2004, Journal of Virology.

[98]  L. Kleiman,et al.  The Interaction between HIV-1 Gag and APOBEC3G* , 2004, Journal of Biological Chemistry.

[99]  R. M. Marión,et al.  The composition of Staufen-containing RNA granules from human cells indicates their role in the regulated transport and translation of messenger RNAs. , 2004, Nucleic acids research.

[100]  A. Gatignol,et al.  Identification of Staufen in the Human Immunodeficiency Virus Type 1 Gag Ribonucleoprotein Complex and a Role in Generating Infectious Viral Particles , 2004, Molecular and Cellular Biology.

[101]  C. M. Owens,et al.  The cytoplasmic body component TRIM5α restricts HIV-1 infection in Old World monkeys , 2004, Nature.

[102]  Y. Shoya,et al.  Nucleolin and the Packaging Signal, ψ, Promote the Budding of Human Immunodeficiency Virus Type‐1 (HIV‐1) , 2004, Microbiology and immunology.

[103]  P. Shannon,et al.  Cytoscape: a software environment for integrated models of biomolecular interaction networks. , 2003, Genome research.

[104]  M. Campbell,et al.  PANTHER: a library of protein families and subfamilies indexed by function. , 2003, Genome research.

[105]  K. Musier-Forsyth,et al.  The Interaction between HIV-1 Gag and Human Lysyl-tRNA Synthetase during Viral Assembly* , 2003, Journal of Biological Chemistry.

[106]  Gary D. Bader,et al.  An automated method for finding molecular complexes in large protein interaction networks , 2003, BMC Bioinformatics.

[107]  Frank Angenstein,et al.  A Receptor for Activated C Kinase Is Part of Messenger Ribonucleoprotein Complexes Associated with PolyA-mRNAs in Neurons , 2002, The Journal of Neuroscience.

[108]  Taka-Aki Sato,et al.  Identification of mRNA/Protein (mRNP) Complexes Containing Purα, mStaufen, Fragile X Protein, and Myosin Va and their Association with Rough Endoplasmic Reticulum Equipped with a Kinesin Motor* , 2002, The Journal of Biological Chemistry.

[109]  S. Nisole,et al.  Anchorage of HIV on permissive cells leads to coaggregation of viral particles with surface nucleolin at membrane raft microdomains. , 2002, Experimental cell research.

[110]  M. Mann,et al.  Stable Isotope Labeling by Amino Acids in Cell Culture, SILAC, as a Simple and Accurate Approach to Expression Proteomics* , 2002, Molecular & Cellular Proteomics.

[111]  J. Luban,et al.  Specific Incorporation of Heat Shock Protein 70 Family Members into Primate Lentiviral Virions , 2002, Journal of Virology.

[112]  E. Hunter,et al.  Type D Retrovirus Gag Polyprotein Interacts with the Cytosolic Chaperonin TRiC , 2001, Journal of Virology.

[113]  M. Resh,et al.  Localization of Human Immunodeficiency Virus Type 1 Gag and Env at the Plasma Membrane by Confocal Imaging , 2000, Journal of Virology.

[114]  M. Luo,et al.  The Double-Stranded RNA-Binding Protein Staufen Is Incorporated in Human Immunodeficiency Virus Type 1: Evidence for a Role in Genomic RNA Encapsidation , 2000, Journal of Virology.

[115]  M. Ashburner,et al.  Gene Ontology: tool for the unification of biology , 2000, Nature Genetics.

[116]  J. Luban,et al.  Basic Residues in Human Immunodeficiency Virus Type 1 Nucleocapsid Promote Virion Assembly via Interaction with RNA , 2000, Journal of Virology.

[117]  S. Goff,et al.  Cellular Motor Protein KIF-4 Associates with Retroviral Gag , 1999, Journal of Virology.

[118]  B. Séraphin,et al.  A generic protein purification method for protein complex characterization and proteome exploration , 1999, Nature Biotechnology.

[119]  J. Luban,et al.  Translation Elongation Factor 1-Alpha Interacts Specifically with the Human Immunodeficiency Virus Type 1 Gag Polyprotein , 1999, Journal of Virology.

[120]  R. Gorelick,et al.  Interaction of the Human Immunodeficiency Virus Type 1 Nucleocapsid with Actin , 1999, Journal of Virology.

[121]  B. Gowen,et al.  Actin Associates with the Nucleocapsid Domain of the Human Immunodeficiency Virus Gag Polyprotein , 1999, Journal of Virology.

[122]  L. Selig,et al.  Interaction with the p6 Domain of the Gag Precursor Mediates Incorporation into Virions of Vpr and Vpx Proteins from Primate Lentiviruses , 1999, Journal of Virology.

[123]  A. Aldovini,et al.  Charged amino acid residues of human immunodeficiency virus type 1 nucleocapsid p7 protein involved in RNA packaging and infectivity , 1996, Journal of virology.

[124]  J. Luban,et al.  Binding of the human immunodeficiency virus type 1 Gag polyprotein to cyclophilin A is mediated by the central region of capsid and requires Gag dimerization , 1996, Journal of virology.

[125]  A. Shevchenko,et al.  Mass spectrometric sequencing of proteins silver-stained polyacrylamide gels. , 1996, Analytical chemistry.

[126]  J. Luban,et al.  Specific incorporation of cyclophilin A into HIV-1 virions , 1994, Nature.

[127]  J. Sodroski,et al.  Functional association of cyclophilin A with HIV-1 virions , 1994, Nature.

[128]  Jeremy Luban,et al.  Human immunodeficiency virus type 1 Gag protein binds to cyclophilins A and B , 1993, Cell.

[129]  P. Bork,et al.  InterPro in 2011 , 2012 .

[130]  Brad T. Sherman,et al.  Systematic and integrative analysis of large gene lists using DAVID bioinformatics resources , 2008, Nature Protocols.

[131]  J. Sodroski,et al.  Functional replacement of the RING, B-box 2, and coiled-coil domains of tripartite motif 5alpha (TRIM5alpha) by heterologous TRIM domains. , 2006, Journal of virology.

[132]  M. Ashburner,et al.  The Gene Ontology Consortium , 2000 .