How Good Are Neuron Models?

A recent competition encouraged modelers to predict neuronal activity. Which neuron model performed the best? Opinions strongly diverge on what constitutes a good model of a neuron (1–3). Two lines of thought on this have coexisted for a long time: detailed biophysical models (of the style proposed in 1952 by the physiologists Alan Hodgkin and Andrew Huxley) that describe ion channels on the tree-like spatial structure of the neuronal cell (4), and simple “integrate-and-fire” models based on the much older insight that pulsatile electrical activity (known as an action potential or spike) is a threshold process. Electrophysiologists generally prefer the biophysical models, familiar with the notion of ion channels that open and close (and hence, alter neuronal activity) depending on environmental conditions. Theoreticians, by contrast, typically prefer simple neuron models with few parameters that are amenable to mathematical analysis. Earlier this year, following previous attempts at model comparison on a smaller scale (5), the International Neuroinformatics Coordinating Facility (INCF) launched an international competition (6) that allowed a quantitative comparison of neuron models.

[1]  AC Tose Cell , 1993, Cell.

[2]  D. Wilkin,et al.  Neuron , 2001, Brain Research.

[3]  勇一 作村,et al.  Biophysics of Computation , 2001 .

[4]  Idan Segev,et al.  Playing the Devil's advocate: is the Hodgkin–Huxley model useful? , 2002, Trends in Neurosciences.

[5]  Bartlett W. Mel,et al.  Dendrites: bug or feature? , 2003, Current Opinion in Neurobiology.

[6]  W. Senn,et al.  Top-down dendritic input increases the gain of layer 5 pyramidal neurons. , 2004, Cerebral cortex.

[7]  宁北芳,et al.  疟原虫var基因转换速率变化导致抗原变异[英]/Paul H, Robert P, Christodoulou Z, et al//Proc Natl Acad Sci U S A , 2005 .

[8]  Uri T Eden,et al.  A point process framework for relating neural spiking activity to spiking history, neural ensemble, and extrinsic covariate effects. , 2005, Journal of neurophysiology.

[9]  A. Aertsen,et al.  Controlling synaptic input patterns in vitro by dynamic photo stimulation. , 2005, Journal of neurophysiology.

[10]  Tim Gollisch,et al.  Modeling Single-Neuron Dynamics and Computations: A Balance of Detail and Abstraction , 2006, Science.

[11]  J. Magee,et al.  Integrative Properties of Radial Oblique Dendrites in Hippocampal CA1 Pyramidal Neurons , 2006, Neuron.

[12]  W. C. Hall,et al.  High-speed mapping of synaptic connectivity using photostimulation in Channelrhodopsin-2 transgenic mice , 2007, Proceedings of the National Academy of Sciences.

[13]  Henry Markram,et al.  A Novel Multiple Objective Optimization Framework for Constraining Conductance-Based Neuron Models by Experimental Data , 2007, Front. Neurosci..

[14]  M. Landy,et al.  The effect of viewpoint on perceived visual roughness. , 2007, Journal of vision.

[15]  Wulfram Gerstner,et al.  The quantitative single-neuron modeling competition , 2008, Biological Cybernetics.

[16]  Eero P. Simoncelli,et al.  Spatio-temporal correlations and visual signalling in a complete neuronal population , 2008, Nature.

[17]  Liam Paninski,et al.  Smoothing of, and Parameter Estimation from, Noisy Biophysical Recordings , 2009, PLoS Comput. Biol..

[18]  Thomas G. Oertner,et al.  How do Synapses Measure Milliseconds? , 2009, Front. Comput. Neurosci..

[19]  R. Rosenfeld Nature , 2009, Otolaryngology--head and neck surgery : official journal of American Academy of Otolaryngology-Head and Neck Surgery.