The extended finite element method for boundary layer problems in biofilm growth

In this paper, we use the eXtended Finite Element Method (X-FEM), with customized enrichment functions determined by asymptotic analysis, to study boundary layer behavior in elliptic equations with discontinuous coecien ts. In particular, we look at equations where the coecien ts are discontinuous across a boundary internal to the domain. We also show how to implement this method for Dirichlet conditions at an interface. The method requires neither the mesh to conform to the internal boundary, nor the mesh to have additional renemen t near the interface, making this an ideal method for moving interface type problems. We then apply this method to equations for linearized biolm growth to study the eects of biolm geometry on the availability of substrate and the eect of tip-splitting in biolm growth.

[1]  Ted Belytschko,et al.  Modelling crack growth by level sets in the extended finite element method , 2001 .

[2]  P. Colella,et al.  A Cartesian Grid Embedded Boundary Method for Poisson's Equation on Irregular Domains , 1998 .

[3]  Isaac Klapper,et al.  Finger Formation in Biofilm Layers , 2002, SIAM J. Appl. Math..

[4]  S. Osher,et al.  Algorithms Based on Hamilton-Jacobi Formulations , 1988 .

[5]  Li-Tien Cheng,et al.  A second-order-accurate symmetric discretization of the Poisson equation on irregular domains , 2002 .

[6]  T. Belytschko,et al.  The extended finite element method (XFEM) for solidification problems , 2002 .

[7]  T. Belytschko,et al.  An Extended Finite Element Method for Two-Phase Fluids , 2003 .

[8]  Ted Belytschko,et al.  The extended finite element method for rigid particles in Stokes flow , 2001 .

[9]  Ted Belytschko,et al.  A finite element method for crack growth without remeshing , 1999 .

[10]  J. Sethian,et al.  Fronts propagating with curvature-dependent speed: algorithms based on Hamilton-Jacobi formulations , 1988 .

[11]  J. Langer Instabilities and pattern formation in crystal growth , 1980 .

[12]  Ted Belytschko,et al.  An extended finite element method for modeling crack growth with frictional contact , 2001 .

[13]  David L. Chopp,et al.  A hybrid extended finite element/level set method for modeling phase transformations , 2002 .

[14]  Ted Belytschko,et al.  Discontinuous enrichment in finite elements with a partition of unity method , 2000 .

[15]  D. Chopp,et al.  The dependence of quorum sensing on the depth of a growing biofilm , 2003, Bulletin of mathematical biology.

[16]  R. LeVeque,et al.  A comparison of the extended finite element method with the immersed interface method for elliptic equations with discontinuous coefficients and singular sources , 2006 .

[17]  T. Belytschko,et al.  MODELING HOLES AND INCLUSIONS BY LEVEL SETS IN THE EXTENDED FINITE-ELEMENT METHOD , 2001 .

[18]  D. Chopp,et al.  Extended finite element method and fast marching method for three-dimensional fatigue crack propagation , 2003 .

[19]  T. Belytschko,et al.  Extended finite element method for three-dimensional crack modelling , 2000 .

[20]  I. Babuska,et al.  The partition of unity finite element method: Basic theory and applications , 1996 .

[21]  David L. Chopp,et al.  A comparison of the extended finite element method with the immersed interface method for elliptic equations with discontinuous coefficients and singular sources , 2006 .