Insights into enzyme function from studies on mutants of dihydrofolate reductase.

Kinetic analysis and protein mutagenesis allow the importance of individual amino acids in ligand binding and catalysis to be assessed. A kinetic analysis has shown that the reaction catalyzed by dihydrofolate reductase is optimized with respect to product flux, which in turn is predetermined by the active-site hydrophobic surface. Protein mutagenesis has revealed that specific hydrophobic residues contribute 2 to 5 kilocalories per mole to ligand binding and catalysis. The extent to which perturbations within this active-site ensemble may affect catalysis is discussed in terms of the constraints imposed by the energy surface for the reaction.

[1]  Alan R. Fersht,et al.  Binding energy and catalysis: a lesson from protein engineering of the tyrosyl-tRNA synthetase , 1986 .

[2]  S. Benkovic,et al.  On interpreting the inhibition of and catalysis by dihydrofolate reductase , 1987 .

[3]  J. V. Miller,et al.  Probing Steric and Hydrophobic Effects on Enzyme-Substrate Interactions by Protein Engineering , 1986, Science.

[4]  G A Petsko,et al.  Aromatic-aromatic interaction: a mechanism of protein structure stabilization. , 1985, Science.

[5]  N. Xuong,et al.  Dihydrofolate reductase: x-ray structure of the binary complex with methotrexate. , 1977, Science.

[6]  J. Chin Perfect enzymes: is the equilibrium constant between the enzyme's bound species unity? , 1983 .

[7]  J. Knowles,et al.  Evolution of enzyme function and the development of catalytic efficiency. , 1976, Biochemistry.

[8]  Peter G. Jones,et al.  Bond length and reactivity. Stereoelectronic effects on bonding in acetals and glucosides , 1984 .

[9]  D. Koshland,et al.  The catalytic and regulatory properties of enzymes. , 1968, Annual review of biochemistry.

[10]  Jack D. Dunitz,et al.  From crystal statics to chemical dynamics , 1983 .

[11]  M. Poe Acidic dissociation constants of folic acid, dihydrofolic acid, and methotrexate. , 1977, The Journal of biological chemistry.

[12]  S. Benkovic,et al.  Protein engineering of dihydrofolate reductase. pH dependency of Phe-31 mutants , 1987 .

[13]  Carl Frieden,et al.  Kinetic analysis of the mechanism of Escherichia coli dihydrofolate reductase. , 1987, Journal of Biological Chemistry.

[14]  A. Fersht The hydrogen bond in molecular recognition , 1987 .

[15]  S. Benner,et al.  Dynamic transduction of energy and internal equilibria in enzymes: a reexamination of pyruvate kinase , 1985 .

[16]  R W King,et al.  Kinetics of substrate, coenzyme, and inhibitor binding to Escherichia coli dihydrofolate reductase. , 1981, Biochemistry.

[17]  S. Benkovic,et al.  Probing the functional role of phenylalanine-31 of Escherichia coli dihydrofolate reductase by site-directed mutagenesis. , 1987, Biochemistry.

[18]  S J Oatley,et al.  Functional role of aspartic acid-27 in dihydrofolate reductase revealed by mutagenesis. , 1986, Science.

[19]  S. Benkovic,et al.  Importance of a hydrophobic residue in binding and catalysis by dihydrofolate reductase. , 1986, Proceedings of the National Academy of Sciences of the United States of America.

[20]  J. Knowles Tinkering with enzymes: what are we learning? , 1987, Science.

[21]  J. Morrison,et al.  The pH-dependence of the binding of dihydrofolate and substrate analogues to dihydrofolate reductase from Escherichia coli. , 1983, Biochimica et biophysica acta.

[22]  A. Fersht,et al.  Structure-activity relationships in engineered proteins: characterization of disruptive deletions in the alpha-ammonium group binding site of tyrosyl-tRNA synthetase. , 1987, Biochemistry.

[23]  S. Benkovic,et al.  Site‐specific mutagenesis of dihydrofolate reductase from Escherichia coli , 1985, Journal of cellular biochemistry.

[24]  C. Chothia The nature of the accessible and buried surfaces in proteins. , 1976, Journal of molecular biology.

[25]  Linus Pauling,et al.  Molecular Architecture and Biological Reactions , 1946 .

[26]  S. Sassa,et al.  Effects of metalloporphyrins on hemoglobin formation in mouse Friend virus-transformed erythroleukemia cells. Stimulation of heme biosynthesis by cobalt protoporphyrin. , 1982, The Journal of biological chemistry.

[27]  S. Benkovic,et al.  Construction and evaluation of the kinetic scheme associated with dihydrofolate reductase from Escherichia coli. , 1987, Biochemistry.

[28]  W. Jencks,et al.  Two functional domains of coenzyme A activate catalysis by coenzyme A transferase. Pantetheine and adenosine 3'-phosphate 5'-diphosphate. , 1986, The Journal of biological chemistry.

[29]  Alan R. Fersht,et al.  The use of double mutants to detect structural changes in the active site of the tyrosyl-tRNA synthetase (Bacillus stearothermophilus) , 1984, Cell.

[30]  R M Stroud,et al.  The three-dimensional structure of Asn102 mutant of trypsin: role of Asp102 in serine protease catalysis. , 1988, Science.

[31]  N. Xuong,et al.  Dihydrofolate reductase from Lactobacillus casei. X-ray structure of the enzyme methotrexate.NADPH complex. , 1978, Journal of Biological Chemistry.

[32]  J. Gready Theoretical studies on the activation of the pterin cofactor in the catalytic mechanism of dihydrofolate reductase. , 1985, Biochemistry.

[33]  Yun-Dong Wu,et al.  Theoretical transition structures for hydride transfer to methyleneiminium ion from methylamine and dihydropyridine. On the nonlinearity of hydride transfers , 1987 .

[34]  W. Jencks,et al.  Binding energy, specificity, and enzymic catalysis: the circe effect. , 2006, Advances in enzymology and related areas of molecular biology.

[35]  N. Xuong,et al.  Dihydrofolate reductase from Lactobacillus casei. Stereochemistry of NADPH binding. , 1979, The Journal of biological chemistry.