Parallelizable Strategy for the Estimation of the 3D Structure of Biological Macromolecules
暂无分享,去创建一个
Anna Tonazzini | Ivan Merelli | Emanuele Salerno | Claudia Caudai | Monica Zoppè | E. Salerno | A. Tonazzini | M. Zoppè | I. Merelli | C. Caudai
[1] S. Bicciato,et al. Comparison of computational methods for Hi-C data analysis , 2017, Nature Methods.
[2] Ad Bax,et al. Solution structure of calcium-free calmodulin , 1995, Nature Structural Biology.
[3] Marc Baaden,et al. Molecular simulations and visualization: introduction and overview. , 2014, Faraday discussions.
[4] Mathieu Blanchette,et al. Chromatin conformation signatures of cellular differentiation , 2009, Genome Biology.
[5] Wouter Boomsma,et al. Beyond rotamers: a generative, probabilistic model of side chains in proteins , 2010, BMC Bioinformatics.
[6] Mathieu Blanchette,et al. Three-dimensional modeling of chromatin structure from interaction frequency data using Markov chain Monte Carlo sampling , 2011, BMC Bioinformatics.
[7] Jinbo Xu,et al. Inferential modeling of 3D chromatin structure , 2015, Nucleic acids research.
[8] Anna Tonazzini,et al. Estimation of the Spatial Chromatin Structure Based on a Multiresolution Bead-Chain Model , 2019, IEEE/ACM Transactions on Computational Biology and Bioinformatics.
[9] Charles F. F. Karney. Quaternions in molecular modeling. , 2005, Journal of molecular graphics & modelling.
[10] J. Dekker,et al. Capturing Chromosome Conformation , 2002, Science.
[11] P. Kollman,et al. A Second Generation Force Field for the Simulation of Proteins, Nucleic Acids, and Organic Molecules , 1995 .
[12] Anna Tonazzini,et al. Inferring 3D chromatin structure using a multiscale approach based on quaternions , 2015, BMC Bioinformatics.
[13] Noam Kaplan,et al. The Hitchhiker's guide to Hi-C analysis: practical guidelines. , 2015, Methods.
[14] I. Amit,et al. Comprehensive mapping of long range interactions reveals folding principles of the human genome , 2011 .
[15] Jesse R. Dixon,et al. Topological Domains in Mammalian Genomes Identified by Analysis of Chromatin Interactions , 2012, Nature.