CDC45, a novel yeast gene that functions with the origin recognition complex and Mcm proteins in initiation of DNA replication

The CDC45 gene of Saccharomyces cerevisiae was isolated by complementation of the cold-sensitive cdc45-1 mutant and shown to be essential for cell viability. Although CDC45 genetically interacts with a group of MCM genes (CDC46, CDC47, and CDC54), the predicted sequence of its protein product reveals no significant sequence similarity to any known Mcm family member. Further genetic characterization of the cdc45-1 mutant demonstrated that it is synthetically lethal with orc2-1, mcm2-1, and mcm3-1. These results not only reveal a functional connection between the origin recognition complex (ORC) and Cdc45p but also extend the CDC45-MCM genetic interaction to all known MCM family members that were shown to be involved in replication initiation. Initiation of DNA replication in cdc45-1 cells was defective, causing a delayed entry into S phase at the nonpermissive temperature, as well as a high plasmid loss rate which could be suppressed by tandem copies of replication origins. Furthermore, two-dimensional gels directly showed that chromosomal origins fired less frequently in cdc45-1 cells at the nonpermissive temperature. These findings suggest that Cdc45p, ORC, and Mcm proteins act in concert for replication initiation throughout the genome.

[1]  D. Koshland,et al.  Addition of extra origins of replication to a minichromosome suppresses its mitotic loss in cdc6 and cdc14 mutants of Saccharomyces cerevisiae. , 1992, Proceedings of the National Academy of Sciences of the United States of America.

[2]  D. Botstein,et al.  Cold-sensitive cell-division-cycle mutants of yeast: isolation, properties, and pseudoreversion studies. , 1982, Genetics.

[3]  B. Tye,et al.  Mcm2 and Mcm3, two proteins important for ARS activity, are related in structure and function. , 1991, Genes & development.

[4]  J. Diffley The initiation of DNA replication in the budding yeast cell division cycle , 1995, Yeast.

[5]  K. Nasmyth,et al.  An essential role for the Cdc6 protein in forming the pre-replicative complexes of budding yeast , 1996, Nature.

[6]  J. Huberman,et al.  The in vivo replication origin of the yeast 2μm plasmid , 1987, Cell.

[7]  J. Sambrook,et al.  Molecular Cloning: A Laboratory Manual , 2001 .

[8]  I. Todorov,et al.  The role of MCM proteins in the cell cycle control of genome duplication , 1996, BioEssays : news and reviews in molecular, cellular and developmental biology.

[9]  J. Rine,et al.  The origin recognition complex has essential functions in transcriptional silencing and chromosomal replication. , 1995, Genes & development.

[10]  D. Botstein,et al.  Subcellular localization of yeast CDC46 varies with the cell cycle. , 1990, Genes & development.

[11]  D. Kowalski,et al.  Multiple DNA elements in ARS305 determine replication origin activity in a yeast chromosome. , 1996, Nucleic acids research.

[12]  B. Tye,et al.  Cell cycle-regulated nuclear localization of MCM2 and MCM3, which are required for the initiation of DNA synthesis at chromosomal replication origins in yeast. , 1993, Genes & development.

[13]  B. Tye,et al.  The phenotype of the minichromosome maintenance mutant mcm3 is characteristic of mutants defective in DNA replication , 1990, Molecular and cellular biology.

[14]  B. Stillman,et al.  The origin recognition complex interacts with a bipartite DNA binding site within yeast replicators. , 1995, Proceedings of the National Academy of Sciences of the United States of America.

[15]  D. Botstein,et al.  A group of interacting yeast DNA replication genes. , 1991, Genes & Development.

[16]  S. Bell,et al.  Yeast origin recognition complex functions in transcription silencing and DNA replication. , 1993, Science.

[17]  B. Stillman,et al.  Functional conservation of multiple elements in yeast chromosomal replicators , 1994, Molecular and cellular biology.

[18]  J. Rine,et al.  Origin recognition complex (ORC) in transcriptional silencing and DNA replication in S. cerevisiae. , 1993, Science.

[19]  Bruce Stillman,et al.  ORC and Cdc6p interact and determine the frequency of initiation of DNA replication in the genome , 1995, Cell.

[20]  H. Smith,et al.  Replication initiates at a confined region during DNA amplification in Sciara DNA puff II/9A. , 1993, Genes & development.

[21]  P. Manivasakam,et al.  Introducing DNA into Yeast by Transformation , 1993 .

[22]  M. Méchali,et al.  Chromotin binding, nuclear localization and phosphorylation of Xenopus cdc21 are cell‐cycle dependent and associated with the control of initiation of DNA replication. , 1996, The EMBO journal.

[23]  B. Tye,et al.  Mutants of S. cerevisiae defective in the maintenance of minichromosomes. , 1984, Genetics.

[24]  S. Dalton,et al.  Cell cycle-regulated nuclear import and export of Cdc47, a protein essential for initiation of DNA replication in budding yeast. , 1995, Proceedings of the National Academy of Sciences of the United States of America.

[25]  W. L. Fangman,et al.  A yeast origin of replication is activated late in S phase , 1991, Cell.

[26]  H. Nojima,et al.  Identification of the yeast MCM3-related protein as a component of xenopus DNA replication licensing factor , 1995, Cell.

[27]  E. Myers,et al.  Basic local alignment search tool. , 1990, Journal of molecular biology.

[28]  I. Herskowitz,et al.  Isolation of ORC6, a component of the yeast origin recognition complex by a one-hybrid system. , 1993, Science.

[29]  G. Fink,et al.  Methods in enzymology vol 194 guide to yeast genetics and molecular biology , 1991 .

[30]  J. Blow,et al.  The role of MCM/P1 proteins in the licensing of DNA replication. , 1996, Trends in biochemical sciences.

[31]  James P. J. Chong,et al.  Purification of an MCM-containing complex as a component of the DNA replication licensing system , 1995, Nature.

[32]  K Nasmyth,et al.  Cdc6 is an unstable protein whose de novo synthesis in G1 is important for the onset of S phase and for preventing a ‘reductional’ anaphase in the budding yeast Saccharomyces cerevisiae. , 1995, The EMBO journal.

[33]  B. Stillman,et al.  A yeast chromosomal origin of DNA replication defined by multiple functional elements. , 1992, Science.

[34]  R. Laskey,et al.  The nuclear envelope prevents reinitiation of replication by regulating the binding of MCM3 to chromatin in Xenopus egg extracts , 1995, Current Biology.

[35]  B. Stillman,et al.  Initiation of chromosomal DNA replication in eukaryotes. Lessons from lambda. , 1994, The Journal of biological chemistry.

[36]  J. Diffley,et al.  Initiation complex assembly at budding yeast replication origins begins with the recognition of a bipartite sequence by limiting amounts of the initiator, ORC. , 1995, The EMBO journal.

[37]  A. Correspondent Eukaryotic DNA Replication , 1973, Nature.

[38]  K. Nasmyth,et al.  S-phase-promoting cyclin-dependent kinases prevent re-replication by inhibiting the transition of replication origins to a pre-replicative state , 1995, Current Biology.

[39]  C. F. Hardy Characterization of an essential Orc2p-associated factor that plays a role in DNA replication , 1996, Molecular and cellular biology.

[40]  J. Diffley,et al.  Two steps in the assembly of complexes at yeast replication origins in vivo , 1994, Cell.

[41]  R. Laskey,et al.  Human replication proteins hCdc21, hCdc46 and P1Mcm3 bind chromatin uniformly before S-phase and are displaced locally during DNA replication. , 1996, Journal of cell science.

[42]  J. Rine,et al.  The origin recognition complex in silencing, cell cycle progression, and DNA replication. , 1995, Molecular biology of the cell.

[43]  S. Dalton,et al.  Cdc54 belongs to the Cdc46/Mcm3 family of proteins which are essential for initiation of eukaryotic DNA replication. , 1995, Gene.

[44]  R. Laskey,et al.  Two interdependent basic domains in nucleoplasmin nuclear targeting sequence: Identification of a class of bipartite nuclear targeting sequence , 1991, Cell.

[45]  K. Shirahige,et al.  Characterization of a novel CDC gene (ORC1) partly homologous to CDC6 of Saccharomyces cerevisiae. , 1996, Molecular biology of the cell.

[46]  Janina Maier,et al.  Guide to yeast genetics and molecular biology. , 1991, Methods in enzymology.

[47]  C. Newlon,et al.  Domain B of ARS307 contains two functional elements and contributes to chromosomal replication origin function , 1994, Molecular and cellular biology.

[48]  W. L. Fangman,et al.  The localization of replication origins on ARS plasmids in S. cerevisiae , 1987, Cell.

[49]  P. Russell,et al.  Dual functions of CDC6: a yeast protein required for DNA replication also inhibits nuclear division. , 1992, The EMBO journal.

[50]  T. Böhm,et al.  Activation of S-phase-promoting CDKs in late G1 defines a "point of no return" after which Cdc6 synthesis cannot promote DNA replication in yeast. , 1996, Genes & development.

[51]  B. Tye The MCM2-3-5 proteins: are they replication licensing factors? , 1994, Trends in cell biology.

[52]  J. Broach,et al.  Genome dynamics, protein synthesis, and energetics , 1991 .

[53]  Rodney Rothstein,et al.  Elevated recombination rates in transcriptionally active DNA , 1989, Cell.

[54]  B. Stillman Replicator renaissance , 1993, Nature.

[55]  S. Dalton,et al.  Cdc45p assembles into a complex with Cdc46p/Mcm5p, is required for minichromosome maintenance, and is essential for chromosomal DNA replication. , 1996, Proceedings of the National Academy of Sciences of the United States of America.

[56]  T. Kelly,et al.  DNA replication: Controlling initiation during the cell cycle , 1996, Current Biology.

[57]  S. Bell,et al.  The multidomain structure of Orc1 p reveals similarity to regulators of DNA replication and transcriptional silencing , 1995, Cell.

[58]  Bruce Stillman,et al.  ATP-dependent recognition of eukaryotic origins of DNA replication by a multiprotein complex , 1992, Nature.

[59]  L. Johnston,et al.  DNA synthesis control in yeast: An evolutionarily conserved mechanism for regulating DNA synthesis genes? , 1992, BioEssays : news and reviews in molecular, cellular and developmental biology.

[60]  J. Blow,et al.  A role for the nuclear envelope in controlling DNA replication within the cell cycle , 1988, Nature.

[61]  R. Laskey,et al.  MCM3 complex required for cell cycle regulation of DNA replication in vertebrate cells , 1995, Nature.

[62]  W. L. Fangman,et al.  Activation of replication origins within yeast chromosomes. , 1991, Annual review of cell biology.

[63]  D. Lockshon,et al.  The arrest of replication forks in the rDNA of yeast occurs independently of transcription , 1992, Cell.

[64]  D. Botstein,et al.  CDC46/MCM5, a yeast protein whose subcellular localization is cell cycle-regulated, is involved in DNA replication at autonomously replicating sequences. , 1992, Proceedings of the National Academy of Sciences of the United States of America.