A review of Bayesian belief networks in ecosystem service modelling

A wide range of quantitative and qualitative modelling research on ecosystem services (ESS) has recently been conducted. The available models range between elementary, indicator-based models and complex process-based systems. A semi-quantitative modelling approach that has recently gained importance in ecological modelling is Bayesian belief networks (BBNs). Due to their high transparency, the possibility to combine empirical data with expert knowledge and their explicit treatment of uncertainties, BBNs can make a considerable contribution to the ESS modelling research. However, the number of applications of BBNs in ESS modelling is still limited. This review discusses a number of BBN-based ESS models developed in the last decade. A SWOT analysis highlights the advantages and disadvantages of BBNs in ESS modelling and pinpoints remaining challenges for future research. The existing BBN models are suited to describe, analyse, predict and value ESS. Nevertheless, some weaknesses have to be considered, including poor flexibility of frequently applied software packages, difficulties in eliciting expert knowledge and the inability to model feedback loops. BBNs are increasingly used to analyse, predict and value ecosystem services (ESS).Most BBN applications in ESS modelling target only a single service.Numerous advantages of BBNs in ESS modelling are demonstrated in current applications.Model drawbacks are absence of feedback loops and obligatory variable discretization.Spatially explicit modelling and modelling of ESS bundles are future opportunities.

[1]  Sandra Johnson,et al.  An Integrated Bayesian Network approach to Lyngbya majuscula bloom initiation. , 2010, Marine environmental research.

[2]  Khalil Shihab DYNAMIC MODELING OF GROUNDWATER POLLUTANTS WITH BAYESIAN NETWORKS , 2008, Appl. Artif. Intell..

[3]  B. Marcot,et al.  Using Bayesian belief networks to evaluate fish and wildlife population viability under land management alternatives from an environmental impact statement , 2001 .

[4]  Michael K Stenstrom,et al.  Using satellite imagery for stormwater pollution management with Bayesian networks. , 2006, Water research.

[5]  John Cameron,et al.  An assessment of the costs and benefits of interventions aimed at improving rural community water supplies in developed countries. , 2009, The Science of the total environment.

[6]  David N. Barton,et al.  Bayesian belief networks as a meta-modelling tool in integrated river basin management -- Pros and cons in evaluating nutrient abatement decisions under uncertainty in a Norwegian river basin , 2008 .

[7]  D. Pullar,et al.  Using a Bayesian Network in a GIS to Model Relationships and Threats to Koala Populations Close to Urban Environments , 2007 .

[8]  Henry Tirri,et al.  B-Course: A Web-Based Tool for Bayesian and Causal Data Analysis , 2002, Int. J. Artif. Intell. Tools.

[9]  John Bromley,et al.  Integrated water resources management of overexploited hydrogeological systems using Object-Oriented Bayesian Networks , 2010, Environ. Model. Softw..

[10]  Antonio Salmerón,et al.  Extension of Bayesian Network Classifiers to Regression Problems , 2008, IBERAMIA.

[11]  Michael J. Wisdom,et al.  Status and trends of habitats of terrestrial vertebrates in relation to land management in the interior Columbia river basin , 2001 .

[12]  J. D. Steventon,et al.  Management strategies for a large-scale mountain pine beetle outbreak: Modelling impacts on American martens , 2009 .

[13]  José M. Matías,et al.  Reforestation planning using Bayesian networks , 2009, Environ. Model. Softw..

[14]  Rafael Rumí,et al.  Bayesian networks in environmental modelling , 2011, Environ. Model. Softw..

[15]  Jani Pellikka,et al.  The role of game management in wildlife populations: uncertainty analysis of expert knowledge , 2005, European Journal of Wildlife Research.

[16]  Prakash P. Shenoy,et al.  Inference in hybrid Bayesian networks using mixtures of polynomials , 2011, Int. J. Approx. Reason..

[17]  Veronique Adriaenssens,et al.  Application of Bayesian Belief Networks for the prediction of macroinvertebrate taxa in rivers , 2004 .

[18]  Sašo Džeroski,et al.  Decision Trees in Ecological Modelling , 2011 .

[19]  Robert Fish,et al.  Environmental decision making and an ecosystems approach , 2011 .

[20]  E. M. Scott,et al.  The role of statistics in the analysis of ecosystem services , 2011 .

[21]  D. D. Murphy,et al.  Management of the spotted owl: the interation of science, policy, politics, and litigation , 1994 .

[22]  David W. Keith,et al.  When is it appropriate to combine expert judgments? , 1996 .

[23]  Q. J. Wang,et al.  Approaches for quantifying and managing diffuse phosphorus exports at the farm/small catchment scale. , 2009, Journal of environmental quality.

[24]  M. Kuussaari,et al.  Use of belief network modelling to assess the impact of buffer zones on water protection and biodiversity , 2003 .

[25]  Mark A. Burgman,et al.  Evaluating the accuracy and calibration of expert predictions under uncertainty: predicting the outcomes of ecological research , 2012 .

[26]  Serena H. Chen,et al.  Good practice in Bayesian network modelling , 2012, Environ. Model. Softw..

[27]  David Nash,et al.  A bayesian network for comparing dissolved nitrogen exports from high rainfall cropping in southeastern Australia. , 2010, Journal of environmental quality.

[28]  David K. Stevens,et al.  Using Bayesian networks to model watershed management decisions: an East Canyon Creek case study , 2005, WWW 2005.

[29]  Paul Schot,et al.  A SWOT Analysis of Planning Support Systems , 2007 .

[30]  Dragan A. Savic,et al.  An evolutionary Bayesian belief network methodology for optimum management of groundwater contamination , 2009, Environ. Model. Softw..

[31]  Estevam R. Hruschka,et al.  Using Bayesian networks with rule extraction to infer the risk of weed infestation in a corn-crop , 2009, Eng. Appl. Artif. Intell..

[32]  John F. Lehmkuhl,et al.  Evaluating the effects of ecosystem management alternatives on elk, mule deer, and white-tailed deer in the interior Columbia River basin, USA , 2001 .

[33]  Andrea Castelletti,et al.  Bayesian Networks and participatory modelling in water resource management , 2007, Environ. Model. Softw..

[34]  J. Cain,et al.  Belief Networks: A Framework for the Participatory Development of Natural Resource Management Strategies , 1999 .

[35]  T. Done,et al.  The use of Bayesian Belief networks to aid in the understanding and management of large-scale coral bleaching , 2003 .

[36]  Prakash P. Shenoy,et al.  A causal mapping approach to constructing Bayesian networks , 2004, Decis. Support Syst..

[37]  V Stelzenmüller,et al.  Assessment of a Bayesian Belief Network-GIS framework as a practical tool to support marine planning. , 2010, Marine pollution bulletin.

[38]  Carl S. Smith,et al.  Predicting a 'tree change' in Australia's tropical savannas: Combining different types of models to understand complex ecosystem behaviour , 2010 .

[39]  Quan J. Wang,et al.  A Bayesian network approach to knowledge integration and representation of farm irrigation: 2. Model validation , 2009 .

[40]  Judea Pearl,et al.  Fusion, Propagation, and Structuring in Belief Networks , 1986, Artif. Intell..

[41]  John Bromley,et al.  Research, part of a Special Feature on Implementing Participatory Water Management: Recent Advances in Theory, Practice and Evaluation Evaluation of Bayesian Networks in Participatory Water Resources Management, Upper Guadiana Basin, Spain , 2010 .

[42]  Carmel Pollino,et al.  Examination of conflicts and improved strategies for the management of an endangered Eucalypt species using Bayesian networks , 2007 .

[43]  Adrian C. Newton,et al.  Bayesian Belief Networks as a tool for evidence-based conservation management , 2007 .

[44]  Enrique F. Castillo,et al.  Expert Systems and Probabilistic Network Models , 1996, Monographs in Computer Science.

[45]  James T. Peterson,et al.  Evaluation of potential effects of federal land management alternatives on trends of salmonids and their habitats in the interior Columbia River basin , 2001 .

[46]  Max Henrion,et al.  Uncertainty: A Guide to Dealing with Uncertainty in Quantitative Risk and Policy Analysis , 1990 .

[47]  F. Tari,et al.  A Bayesian Network for predicting yield response of winter wheat to fungicide programmes , 1996 .

[48]  J. Murray,et al.  Predicting the potential distribution of a riparian invasive plant: the effects of changing climate, flood regimes and land‐use patterns , 2012 .

[49]  J. Skjemstad,et al.  Calibration of the Rothamsted organic carbon turnover model (RothC ver. 26.3), using measurable soil organic carbon pools , 2004 .

[50]  P Haddawy,et al.  Construction of a Bayesian network for mammographic diagnosis of breast cancer , 1997, Comput. Biol. Medicine.

[51]  Wendy S. Merritt,et al.  Using Bayesian Networks to complement conventional analyses to explore landholder management of native vegetation , 2011, Environ. Model. Softw..

[52]  Uffe Kjærulff,et al.  dHugin: a computational system for dynamic time-sliced Bayesian networks , 1995 .

[53]  José Manuel Gutiérrez,et al.  Expert Systems and Probabiistic Network Models , 1996 .

[54]  Hector Malano,et al.  A Bayesian network approach to knowledge integration and representation of farm irrigation: 3. Spatial application: KNOWLEDGE INTEGRATION OF FARM IRRIGATION, 3 , 2009 .

[55]  J. Armstrong The Use of the Decomposition Principle in Making Judgments , 1975 .

[56]  H. Ross,et al.  Participatory development of a Bayesian network model for catchment‐based water resource management , 2010 .

[57]  Anthony J. Jakeman,et al.  A Bayesian network approach for assessing the sustainability of coastal lakes in New South Wales, Australia , 2007, Environ. Model. Softw..

[58]  B. Marcot,et al.  Bayesian belief networks: applications in ecology and natural resource management , 2006 .

[59]  Antonio J. Plaza,et al.  Recent Developments in High Performance Computing for Remote Sensing: A Review , 2011, IEEE Journal of Selected Topics in Applied Earth Observations and Remote Sensing.

[60]  Rongxing Li,et al.  Current issues in high-resolution earth observation technology , 2012, Science China Earth Sciences.

[61]  B. Marcot,et al.  Guidelines for developing and updating Bayesian belief networks applied to ecological modeling and conservation , 2006 .

[62]  Ron Johnstone,et al.  Investigating the Use of a Bayesian Network to Model the Risk of Lyngbya majuscula Bloom Initiation in Deception Bay, Queensland, Australia , 2007 .

[63]  Mark E. Borsuk,et al.  A Bayesian network of eutrophication models for synthesis, prediction, and uncertainty analysis , 2004 .

[64]  Jie Shi,et al.  Multi-objective modelling and decision support using a Bayesian network approximation to a non-point source pollution model , 2007, Environ. Model. Softw..

[65]  Anton Kruger,et al.  Next generation system for real-time monitoring of rainfall, soil moisture, and soil temperature , 2011, 2011 IEEE Sensors Applications Symposium.

[66]  Malte Busch,et al.  Potentials of quantitative and qualitative approaches to assessing ecosystem services , 2012 .

[67]  M. Kennard,et al.  Bayesian network models for environmental flow decision making in the Daly River, Northern Territory, Australia , 2012 .

[68]  G. Daily,et al.  Natural Capital: Theory and Practice of Mapping Ecosystem Services , 2011 .

[69]  Martine Maron,et al.  Bayesian networks and adaptive management of wildlife habitat. , 2010, Conservation biology : the journal of the Society for Conservation Biology.

[70]  Gary R. Weckman,et al.  Modeling net ecosystem metabolism with an artificial neural network and Bayesian belief network , 2011, Environ. Model. Softw..

[71]  J. Cain Planning improvements in natural resource management. Guidelines for using Bayesian networks to support the planning and management of development programmes in the water sector and beyond , 2001 .

[72]  Laura Uusitalo,et al.  Advantages and challenges of Bayesian networks in environmental modelling , 2007 .

[73]  Lise Getoor,et al.  Understanding tuberculosis epidemiology using structured statistical models , 2004, Artif. Intell. Medicine.

[74]  Päivi Elisabet Haapasaari,et al.  Formalizing expert knowledge to compare alternative management plans: Sociological perspective to the future management of Baltic salmon stocks , 2010 .

[75]  Wisdom M. Dlamini,et al.  A Bayesian belief network analysis of factors influencing wildfire occurrence in Swaziland , 2010, Environ. Model. Softw..

[76]  B. Naticchia,et al.  A Spatio-Temporal Bayesian Network for Adaptive Risk Management in Territorial Emergency Response Operations , 2012 .

[77]  Mark E. Borsuk,et al.  Assessing the decline of brown trout (Salmo trutta) in Swiss rivers using a Bayesian probability network , 2006 .

[78]  Barry T. Hart,et al.  Bayesian network models for environmental flow decision‐making: 1. Latrobe River Australia , 2011 .

[79]  Kevin B. Korb,et al.  Parameterisation and evaluation of a Bayesian network for use in an ecological risk assessment , 2007, Environ. Model. Softw..

[80]  Harvey Alexander Nature's services: Societal dependence on natural ecosystems: Edited by Gretchen C. Daily Island Press, 1997, $24.95, 392 pages , 1999 .

[81]  Colin M Beale,et al.  Revealing ecological networks using Bayesian network inference algorithms. , 2010, Ecology.

[82]  Mark E. Borsuk,et al.  Stakeholder Values and Scientific Modeling in the Neuse River Watershed , 2001 .

[83]  Jan Staes,et al.  A web application to support the quantification and valuation of ecosystem services , 2013 .

[84]  I. Makin,et al.  Participatory decision support for agricultural management. A case study from Sri Lanka , 2003 .

[85]  Anthony J. Jakeman,et al.  An integrated approach to linking economic valuation and catchment modelling , 2011, Environ. Model. Softw..

[86]  Anthony J. Jakeman,et al.  A review of erosion and sediment transport models , 2003, Environ. Model. Softw..

[87]  J. Bromley,et al.  The use of Hugin® to develop Bayesian networks as an aid to integrated water resource planning , 2005, Environ. Model. Softw..

[88]  Carl Mitchell,et al.  Adaptive modelling for adaptive water quality management in the Great Barrier Reef region, Australia , 2010, Environ. Model. Softw..

[89]  C. Dormann,et al.  A quantitative review of ecosystem service studies: approaches, shortcomings and the road ahead , 2011 .

[90]  Roy Haines-Young,et al.  Belief Networks Exploring ecosystem service issues across diverse knowledge domains using Bayesian , 2011 .

[91]  P J Bacon,et al.  Belief network models of land manager decisions and land use change. , 2002, Journal of environmental management.

[92]  A. Newton,et al.  Use of a Bayesian Belief Network to Predict the Impacts of Commercializing Non-timber Forest Products on Livelihoods , 2006 .

[93]  Finn Verner Jensen,et al.  Public participation modelling using Bayesian networks in management of groundwater contamination , 2007, Environ. Model. Softw..

[94]  David Nash,et al.  Using Monte-Carlo simulations and Bayesian Networks to quantify and demonstrate the impact of fertiliser best management practices , 2011, Environ. Model. Softw..

[95]  Finn V. Jensen,et al.  Bayesian Networks and Decision Graphs , 2001, Statistics for Engineering and Information Science.

[96]  Rafael Rumí,et al.  Hybrid Bayesian network classifiers: Application to species distribution models , 2010, Environ. Model. Softw..

[97]  R. Haines-Young,et al.  Ecosystem Ecology: The links between biodiversity, ecosystem services and human well-being , 2010 .

[98]  Serafín Moral,et al.  Mixtures of Truncated Exponentials in Hybrid Bayesian Networks , 2001, ECSQARU.

[99]  Josef Kittler,et al.  Application of a Bayesian Network in a GIS Based Decision Making System , 1998, Int. J. Geogr. Inf. Sci..

[100]  Del Meidinger,et al.  Capturing expert knowledge for ecosystem mapping using Bayesian networks , 2006 .

[101]  B. Marcot,et al.  Using Bayesian belief networks in adaptive management , 2006 .

[102]  Paul Krause,et al.  Bayesian Networks for the management of greenhouse gas emissions in the British agricultural sector , 2012, Environ. Model. Softw..

[103]  C. McAlpine,et al.  Estimating the influence of land management change on weed invasion potential using expert knowledge , 2012 .

[104]  Kerrie Mengersen,et al.  Integrating Bayesian networks and geographic information systems: Good practice examples , 2012, Integrated environmental assessment and management.

[105]  Marek J. Druzdzel,et al.  SMILE: Structural Modeling, Inference, and Learning Engine and GeNIE: A Development Environment for Graphical Decision-Theoretic Models , 1999, AAAI/IAAI.

[106]  Bernard De Baets,et al.  Fuzzy rule-based models for decision support in ecosystem management. , 2004, The Science of the total environment.

[107]  Jean-Pierre Tremblay,et al.  Choice and development of decision support tools for the sustainable management of deer–forest systems , 2004 .

[108]  Anthony J. Jakeman,et al.  Environmental decision support systems (EDSS) development - Challenges and best practices , 2011, Environ. Model. Softw..

[109]  Alfonso Dominguez,et al.  Bayesian networks in planning a large aquifer in Eastern Mancha, Spain , 2007, Environ. Model. Softw..

[110]  D. Byun,et al.  Review of the Governing Equations, Computational Algorithms, and Other Components of the Models-3 Community Multiscale Air Quality (CMAQ) Modeling System , 2006 .

[111]  Daryl L. Nielsen,et al.  A Bayesian Belief Network Decision Support Tool for Watering Wetlands to Maximise Native Fish Outcomes , 2011, Wetlands.

[112]  F. Fernandez,et al.  Answering Environmental European Directives through information systems , 2011, OCEANS 2011 IEEE - Spain.

[113]  Ockie J. H. Bosch,et al.  Developing decision support tools for rangeland management by combining state and transition models and Bayesian belief networks , 2008 .

[114]  Hans Jørgen Henriksen,et al.  Comparative reflections on the use of modelling tools in conflictive water management settings: The Mancha Occidental aquifer, Spain , 2010, Environ. Model. Softw..

[115]  Kenneth H. Reckhow,et al.  An evaluation of automated structure learning with Bayesian networks: An application to estuarine chlorophyll dynamics , 2011, Environ. Model. Softw..

[116]  Roy Haines-Young,et al.  Indicators of ecosystem service potential at European scales: Mapping marginal changes and trade-offs , 2012 .

[117]  Bronwyn Price,et al.  Using a Bayesian belief network to predict suitable habitat of an endangered mammal – The Julia Creek dunnart (Sminthopsis douglasi) , 2007 .