Accurately quantifying low-abundant targets amid similar sequences by revealing hidden correlations in oligonucleotide microarray data
暂无分享,去创建一个
Vadim Backman | Daniele Veneziano | V. Backman | S. Preheim | M. Polz | Janelle R. Thompson | L. Marcelino | D. Veneziano | Martin F Polz | Luisa A Marcelino | Andres Donaldson | Claudia Steadman | Janelle R Thompson | Sarah Pacocha Preheim | Cynthia Lien | Eelin Lim | C. Steadman | A. Donaldson | Eelin Lim | C. Lien | J. Thompson | Andres Donaldson | Cynthia Lien
[1] J. Sambrook,et al. DNA Microarrays: A Molecular Cloning Manual , 2002 .
[2] S. Acinas,et al. Fine-scale phylogenetic architecture of a complex bacterial community , 2004, Nature.
[3] Jizhong Zhou,et al. Evaluation of 50-mer oligonucleotide arrays for detecting microbial populations in environmental samples. , 2004, BioTechniques.
[4] Alexander W Peterson,et al. Hybridization of mismatched or partially matched DNA at surfaces. , 2002, Journal of the American Chemical Society.
[5] R. Stoughton,et al. Use of hybridization kinetics for differentiating specific from non-specific binding to oligonucleotide microarrays. , 2002, Nucleic acids research.
[6] M. Polz,et al. Diversity and Dynamics of a North Atlantic Coastal Vibrio Community , 2004, Applied and Environmental Microbiology.
[7] D. Leckband,et al. A quantitative assessment of heterogeneity for surface-immobilized proteins. , 2001, Analytical chemistry.
[8] Jizhong Zhou,et al. Detection of Genes Involved in Biodegradation and Biotransformation in Microbial Communities by Using 50-Mer Oligonucleotide Microarrays , 2004, Applied and Environmental Microbiology.
[9] G. Grinstein,et al. Modeling of DNA microarray data by using physical properties of hybridization , 2003, Proceedings of the National Academy of Sciences of the United States of America.
[10] Brendan J. Frey,et al. GenXHC: a probabilistic generative model for cross-hybridization compensation in high-density genome-wide microarray data , 2005, ISMB.
[11] Felix Naef,et al. Absolute mRNA concentrations from sequence-specific calibration of oligonucleotide arrays. , 2003, Nucleic acids research.
[12] C. Li,et al. Model-based analysis of oligonucleotide arrays: expression index computation and outlier detection. , 2001, Proceedings of the National Academy of Sciences of the United States of America.
[13] O. White,et al. Environmental Genome Shotgun Sequencing of the Sargasso Sea , 2004, Science.
[14] Rafael A. Irizarry,et al. Stochastic Models Inspired by Hybridization Theory for Short Oligonucleotide Arrays , 2005, J. Comput. Biol..
[15] Eliot Marshall,et al. Getting the Noise Out of Gene Arrays , 2004, Science.
[16] Jiasen Lu,et al. Assessment of the sensitivity and specificity of oligonucleotide (50mer) microarrays. , 2000, Nucleic acids research.
[17] J. A. Aas,et al. Microbial Risk Indicators of Early Childhood Caries , 2005, Journal of Clinical Microbiology.
[18] G. W. Hatfield,et al. DNA microarrays and gene expression , 2002 .
[19] J. Banfield,et al. Community structure and metabolism through reconstruction of microbial genomes from the environment , 2004, Nature.
[20] Michael Wagner,et al. 16S rRNA Gene-Based Oligonucleotide Microarray for Environmental Monitoring of the Betaproteobacterial Order “Rhodocyclales” , 2005, Applied and Environmental Microbiology.
[21] Joseph L DeRisi,et al. E-Predict: a computational strategy for species identification based on observed DNA microarray hybridization patterns , 2005, Genome Biology.
[22] Chanathip Pharino,et al. Genotypic Diversity Within a Natural Coastal Bacterioplankton Population , 2005, Science.
[23] Yudong D. He,et al. Expression profiling using microarrays fabricated by an ink-jet oligonucleotide synthesizer , 2001, Nature Biotechnology.
[24] Jason D. Gans,et al. Computational Improvements Reveal Great Bacterial Diversity and High Metal Toxicity in Soil , 2005, Science.
[25] Jean-Marie Rouillard,et al. OligoArray: genome-scale oligonucleotide design for microarrays , 2002, Bioinform..
[26] Steen Knudsen,et al. Design of oligonucleotides for microarrays and perspectives for design of multi-transcriptome arrays , 2003, Nucleic Acids Res..
[27] Chunlei Wu,et al. Sequence dependence of cross-hybridization on short oligo microarrays , 2005, Nucleic acids research.
[28] J. Cavanaugh. Biostatistics , 2005, Definitions.
[29] P. Brown,et al. Exploring the metabolic and genetic control of gene expression on a genomic scale. , 1997, Science.
[30] K. Aldape,et al. A model of molecular interactions on short oligonucleotide microarrays , 2003, Nature Biotechnology.
[31] Dorothea K. Thompson,et al. Development and Evaluation of Functional Gene Arrays for Detection of Selected Genes in the Environment , 2001, Applied and Environmental Microbiology.
[32] J. Tiedje,et al. Quantitative Detection of Microbial Genes by Using DNA Microarrays , 2002, Applied and Environmental Microbiology.
[33] Stephan Preibisch,et al. Specific and nonspecific hybridization of oligonucleotide probes on microarrays. , 2004, Biophysical journal.
[34] 김삼묘,et al. “Bioinformatics” 특집을 내면서 , 2000 .
[35] Rafael A Irizarry,et al. Exploration, normalization, and summaries of high density oligonucleotide array probe level data. , 2003, Biostatistics.
[36] Michael B. Eisen,et al. Rapid quantitative profiling of complex microbial populations , 2006, Nucleic acids research.
[37] E. Southern,et al. Molecular interactions on microarrays , 1999, Nature Genetics.
[38] D. Relman. The human body as microbial observatory , 2002, Nature Genetics.
[39] B. Ward,et al. Oligonucleotide Microarray for the Study of Functional Gene Diversity in the Nitrogen Cycle in the Environment , 2003, Applied and Environmental Microbiology.
[40] Clemens Richert,et al. ChipCheck-A Program Predicting Total Hybridization Equilibria for DNA Binding to Small Oligonucleotide Microarrays , 2003, J. Chem. Inf. Comput. Sci..
[41] N. Stralis-Pavese,et al. Development and validation of a diagnostic microbial microarray for methanotrophs. , 2003, Environmental microbiology.
[42] Jörg Peplies,et al. Application and validation of DNA microarrays for the 16S rRNA-based analysis of marine bacterioplankton. , 2004, Environmental microbiology.
[43] S. Preibisch,et al. Base pair interactions and hybridization isotherms of matched and mismatched oligonucleotide probes on microarrays. , 2005, Langmuir : the ACS journal of surfaces and colloids.
[44] A. Lagarde,et al. DNA Microarrays: A Molecular Cloning Manual. , 2003 .
[45] Vincent J. Denef,et al. Validation of a more sensitive method for using spotted oligonucleotide DNA microarrays for functional genomics studies on bacterial communities. , 2003, Environmental microbiology.
[46] Philip Hugenholtz,et al. Impact of Culture-Independent Studies on the Emerging Phylogenetic View of Bacterial Diversity , 1998, Journal of bacteriology.
[47] John Quackenbush,et al. Assessing unmodified 70-mer oligonucleotide probe performance on glass-slide microarrays , 2003, Genome Biology.