Identification and characterization of novel nicotinic receptor‐associated proteins in Caenorhabditis elegans

Nicotinic acetylcholine receptors (nAChRs) mediate fast excitatory neurotransmission in neurons and muscles. To identify nAChR accessory proteins, which may regulate their expression or function, we performed tandem affinity purification of the levamisole‐sensitive nAChR from Caenorhabditis elegans, mass spectrometry of associated components, and RNAi‐based screening for effects on in vivo nicotine sensitivity. Among the proteins identified was the calcineurin A subunit TAX‐6, which appeared to function as a negative regulator of nAChR activity. We also identified five proteins not previously linked to nAChR function, whose inactivation conferred nicotine resistance, implicating them as positive regulators of nAChR activity. Of these, the copine NRA‐1 colocalized with the levamisole receptor at neuronal and muscle plasma membranes, and, when mutated, caused reduced synaptic nAChR expression. Loss of SOC‐1, which acts in receptor tyrosine kinase (RTK) signaling, also reduced synaptic levamisole receptor levels, as did mutations in the fibroblast growth factor receptor EGL‐15, and another RTK, CAM‐1. Thus, tandem affinity purification is a viable approach to identify novel proteins regulating neurotransmitter receptor activity or expression in model systems like C. elegans.

[1]  Y. Dong,et al.  Systematic functional analysis of the Caenorhabditis elegans genome using RNAi , 2003, Nature.

[2]  J. Changeux,et al.  Isolation and purification of the nicotinic acetylcholine receptor and its functional reconstitution into a membrane environment. , 1977, International review of neurobiology.

[3]  N. Szewczyk,et al.  Activated EGL‐15 FGF receptor promotes protein degradation in muscles of Caenorhabditis elegans , 2003, The EMBO journal.

[4]  Andrew K. Jones,et al.  The Caenorhabditis elegans unc-63 Gene Encodes a Levamisole-sensitive Nicotinic Acetylcholine Receptor α Subunit* , 2004, Journal of Biological Chemistry.

[5]  Hiroyuki Kaji,et al.  Large-scale identification of Caenorhabditis elegans proteins by multidimensional liquid chromatography-tandem mass spectrometry. , 2003, Journal of proteome research.

[6]  David B Sattelle,et al.  The Caenorhabditis elegans lev‐8 gene encodes a novel type of nicotinic acetylcholine receptor α subunit , 2005, Journal of neurochemistry.

[7]  N. Unwin,et al.  Refined structure of the nicotinic acetylcholine receptor at 4A resolution. , 2005, Journal of molecular biology.

[8]  J. L. Tomsig,et al.  Identification of Targets for Calcium Signaling through the Copine Family of Proteins , 2003, The Journal of Biological Chemistry.

[9]  U. Staubli,et al.  The polo‐like protein kinases Fnk and Snk associate with a Ca2+‐ and integrin‐binding protein and are regulated dynamically with synaptic plasticity , 1999, The EMBO journal.

[10]  O. Hobert,et al.  Differential Functions of the C. elegans FGF Receptor in Axon Outgrowth and Maintenance of Axon Position , 2004, Neuron.

[11]  J. Duncan,et al.  An adaptive coding model of neural function in prefrontal cortex , 2001, Nature Reviews Neuroscience.

[12]  M. Sheng,et al.  Targeted Protein Degradation and Synapse Remodeling by an Inducible Protein Kinase , 2003, Science.

[13]  J. Changeux,et al.  Allosteric receptors after 30 years , 1998, Neuron.

[14]  C. Borland,et al.  The Caenorhabditis elegans EGL-15 Signaling Pathway Implicates a DOS-Like Multisubstrate Adaptor Protein in Fibroblast Growth Factor Signal Transduction , 2001, Molecular and Cellular Biology.

[15]  L. Khiroug,et al.  Recovery from Desensitization of Neuronal Nicotinic Acetylcholine Receptors of Rat Chromaffin Cells Is Modulated by Intracellular Calcium through Distinct Second Messengers , 1998, The Journal of Neuroscience.

[16]  J. Sanes,et al.  Defective Neuromuscular Synaptogenesis in Agrin-Deficient Mutant Mice , 1996, Cell.

[17]  L. Raymond,et al.  Regulation of ligand-gated ion channels by protein phosphorylation. , 1999, Advances in second messenger and phosphoprotein research.

[18]  J. Merlie,et al.  BIP associates with newly synthesized subunits of the mouse muscle nicotinic receptor , 1991, The Journal of cell biology.

[19]  K. Hofmann,et al.  Nicalin and its binding partner Nomo are novel Nodal signaling antagonists , 2004, The EMBO journal.

[20]  E. Jorgensen,et al.  One GABA and two acetylcholine receptors function at the C. elegans neuromuscular junction , 1999, Nature Neuroscience.

[21]  H. Horvitz,et al.  clr-1 encodes a receptor tyrosine phosphatase that negatively regulates an FGF receptor signaling pathway in Caenorhabditis elegans. , 1998, Genes & development.

[22]  J. Beisson,et al.  The Copines, a Novel Class of C2 Domain-containing, Calciumdependent, Phospholipid-binding Proteins Conserved from Paramecium to Humans* , 1998, The Journal of Biological Chemistry.

[23]  J. Lewis,et al.  The genetics of levamisole resistance in the nematode Caenorhabditis elegans. , 1980, Genetics.

[24]  Sandhya P Koushika,et al.  Loss of the Putative RNA-Directed RNA Polymerase RRF-3 Makes C. elegans Hypersensitive to RNAi , 2002, Current Biology.

[25]  C. Borland,et al.  Fibroblast growth factor signaling in Caenorhabditis elegans , 2001, BioEssays : news and reviews in molecular, cellular and developmental biology.

[26]  D. K. Berg,et al.  Actin Filaments and the Opposing Actions of CaM Kinase II and Calcineurin in Regulating α7-Containing Nicotinic Receptors on Chick Ciliary Ganglion Neurons , 1999, The Journal of Neuroscience.

[27]  Y. Ohshima,et al.  Control of DAF-7 TGF-(alpha) expression and neuronal process development by a receptor tyrosine kinase KIN-8 in Caenorhabditis elegans. , 1999, Development.

[28]  Yuji Kohara,et al.  Large-scale analysis of gene function in Caenorhabditis elegans by high-throughput RNAi , 2001, Current Biology.

[29]  D. H. Kim,et al.  Calcineurin, a calcium/calmodulin-dependent protein phosphatase, is involved in movement, fertility, egg laying, and growth in Caenorhabditis elegans. , 2002, Molecular biology of the cell.

[30]  S. Goodman,et al.  Alternative splicing affecting a novel domain in the C. elegans EGL-15 FGF receptor confers functional specificity , 2003, Development.

[31]  J. Yates,et al.  DTASelect and Contrast: tools for assembling and comparing protein identifications from shotgun proteomics. , 2002, Journal of proteome research.

[32]  J. Bessereau,et al.  A transmembrane protein required for acetylcholine receptor clustering in Caenorhabditis elegans , 2004, Nature.

[33]  J. Sanes,et al.  Induction, assembly, maturation and maintenance of a postsynaptic apparatus , 2001, Nature reviews. Neuroscience.

[34]  E. Jorgensen,et al.  The C.elegans ric‐3 gene is required for maturation of nicotinic acetylcholine receptors , 2002, The EMBO journal.

[35]  I. O'kelly,et al.  Forward Transport 14-3-3 Binding Overcomes Retention in Endoplasmic Reticulum by Dibasic Signals , 2002, Cell.

[36]  I. Mori,et al.  Negative Regulation and Gain Control of Sensory Neurons by the C. elegans Calcineurin TAX-6 , 2002, Neuron.

[37]  Yan Liu,et al.  The gift of Gab , 2002, FEBS letters.

[38]  H. Peng,et al.  Induction of synaptic development in cultured muscle cells by basic fibroblast growth factor , 1991, Neuron.

[39]  H. Horvitz,et al.  An FGF receptor signaling pathway is required for the normal cell migrations of the sex myoblasts in C. elegans hermaphrodites , 1995, Cell.

[40]  T. Soderling,et al.  Identification of an autoinhibitory domain in calcineurin. , 1990, The Journal of biological chemistry.

[41]  E A Barnard,et al.  Caenorhabditis elegans Levamisole Resistance Geneslev-1, unc-29, and unc-38 Encode Functional Nicotinic Acetylcholine Receptor Subunits , 1997, The Journal of Neuroscience.

[42]  B. Séraphin,et al.  A generic protein purification method for protein complex characterization and proteome exploration , 1999, Nature Biotechnology.

[43]  P. Taylor,et al.  Involvement of the Chaperone Protein Calnexin and the Acetylcholine Receptor β-Subunit in the Assembly and Cell Surface Expression of the Receptor* , 1996, The Journal of Biological Chemistry.

[44]  J. Yates,et al.  Direct analysis of protein complexes using mass spectrometry , 1999, Nature Biotechnology.

[45]  William R Schafer,et al.  eat-2 and eat-18 Are Required for Nicotinic Neurotransmission in the Caenorhabditis elegans Pharynx , 2004, Genetics.

[46]  W. Larochelle,et al.  Determination of the tissue distributions and relative concentrations of the postsynaptic 43-kDa protein and the acetylcholine receptor in Torpedo. , 1986, The Journal of biological chemistry.

[47]  P. Distefano,et al.  The Receptor Tyrosine Kinase MuSK Is Required for Neuromuscular Junction Formation In Vivo , 1996, Cell.

[48]  Peng Huang,et al.  FGF signaling functions in the hypodermis to regulate fluid balance in C. elegans , 2004, Development.

[49]  J. Yates,et al.  Large-scale analysis of the yeast proteome by multidimensional protein identification technology , 2001, Nature Biotechnology.