Towards a cell factory for vitamin B12 production in Bacillus megaterium: bypassing of the cobalamin riboswitch control elements.

Bacillus megaterium is a bacterium that has been used in the past for the industrial production of vitamin B12 (cobalamin), the anti-pernicious anaemia factor. Cobalamin is a modified tetrapyrrole with a cobalt ion coordinated within its macrocycle. More recently, B. megaterium has been developed as a host for the high-yield production of recombinant proteins using a xylose inducible promoter system. Herein, we revisit cobalamin production in B. megaterium DSM319. We have investigated the importance of cobalt for optimum growth and cobalamin production. The cobaltochelatase (CbiX(L)) is encoded within a 14-gene cobalamin biosynthetic (cbi) operon, whose gene-products oversee the transformation of uroporphyrinogen III into adenosylcobyrinic acid a,c-diamide, a key precursor of cobalamin synthesis. The production of CbiX(L) in response to exogenous cobalt was monitored. The metal was found to stimulate cobalamin biosynthesis and decrease the levels of CbiX(L). From this we were able to show that the entire cbi operon is transcriptionally regulated by a B12-riboswitch, with a switch-off point at approximately 5 nM cobalamin. To bypass the effects of the B12-riboswitch the cbi operon was cloned without these regulatory elements. Growth of these strains on minimal media supplemented with glycerol as a carbon source resulted in significant increases in cobalamin production (up to 200 μg L(-1)). In addition, a range of partially amidated intermediates up to adenosylcobyric acid was detected. These findings outline a potential way to develop B. megaterium as a cell factory for cobalamin production using cheap raw materials.

[1]  J. Crouzet,et al.  Primary structure, expression in Escherichia coli, and properties of S-adenosyl-L-methionine:uroporphyrinogen III methyltransferase from Bacillus megaterium , 1991, Journal of bacteriology.

[2]  D. Jahn,et al.  Microbial production of vitamin B12 , 2002, Applied Microbiology and Biotechnology.

[3]  Jeffrey E. Barrick,et al.  Coenzyme B12 riboswitches are widespread genetic control elements in prokaryotes. , 2004, Nucleic acids research.

[4]  C. Roessner,et al.  Fine-Tuning Our Knowledge of the Anaerobic Route to Cobalamin (Vitamin B12) , 2006, Journal of bacteriology.

[5]  M. Howard,et al.  Characterization of the Enzyme CbiH60 Involved in Anaerobic Ring Contraction of the Cobalamin (Vitamin B12) Biosynthetic Pathway* , 2012, The Journal of Biological Chemistry.

[6]  Dieter Jahn,et al.  Proteome analysis of a recombinant Bacillus megaterium strain during heterologous production of a glucosyltransferase , 2005, Proteome Science.

[7]  G. Minot,et al.  TREATMENT OF PERNICIOUS ANEMIA BY A SPECIAL DIET , 1926 .

[8]  A. Munro,et al.  Characterization of the Cobaltochelatase CbiXL , 2003, Journal of Biological Chemistry.

[9]  D. Jahn,et al.  Regulation of heme biosynthesis in non-phototrophic bacteria. , 2002, Journal of molecular microbiology and biotechnology.

[10]  L. Debussche,et al.  Purification and characterization of S-adenosyl-L-methionine: uroporphyrinogen III methyltransferase from Pseudomonas denitrificans , 1989, Journal of bacteriology.

[11]  M. Howard,et al.  Elucidation of the anaerobic pathway for the corrin component of cobalamin (vitamin B12) , 2013, Proceedings of the National Academy of Sciences.

[12]  D. Downs,et al.  Cobalt Targets Multiple Metabolic Processes in Salmonella enterica , 2007, Journal of bacteriology.

[13]  J. Escalante‐Semerena,et al.  The biosynthesis of adenosylcobalamin (vitamin B12). , 2002, Natural product reports.

[14]  M. Fontecave,et al.  A genetic analysis of the response of Escherichia coli to cobalt stress. , 2010, Environmental microbiology.

[15]  W. Deckwer,et al.  Production and secretion of recombinant Leuconostoc mesenteroides dextransucrase DsrS in Bacillus megaterium. , 2005, Biotechnology and bioengineering.

[16]  In-Kwon Kim,et al.  CbiX-homologous protein (CbiXhp), a metal-binding protein, from Streptomyces seoulensis is involved in expression of nickel-containing superoxide dismutase. , 2003, FEMS microbiology letters.

[17]  E. Brody,et al.  Salmonella typhimurium cobalamin (vitamin B12) biosynthetic genes: functional studies in S. typhimurium and Escherichia coli , 1996, Journal of bacteriology.

[18]  Martin J. Warren,et al.  Algae acquire vitamin B12 through a symbiotic relationship with bacteria , 2005, Nature.

[19]  J. Escalante‐Semerena Conversion of Cobinamide into Adenosylcobamide in Bacteria and Archaea , 2007, Journal of bacteriology.

[20]  O. Schilling,et al.  A protein-dependent riboswitch controlling ptsGHI operon expression in Bacillus subtilis: RNA structure rather than sequence provides interaction specificity. , 2004, Nucleic acids research.

[21]  J. B. Wolf,et al.  Isolation and genetic characterizations of Bacillus megaterium cobalamin biosynthesis-deficient mutants , 1986, Journal of bacteriology.

[22]  D. Jahn,et al.  Systems biology of recombinant protein production in Bacillus megaterium. , 2010, Advances in biochemical engineering/biotechnology.

[23]  C. Smales,et al.  Identification of the limitations on recombinant gene expression in CHO cell lines with varying luciferase production rates , 2009, Biotechnology and bioengineering.

[24]  L. Debussche,et al.  Biosynthesis of the corrin macrocycle of coenzyme B12 in Pseudomonas denitrificans , 1993, Journal of bacteriology.

[25]  W. Deckwer,et al.  Bacillus megaterium—from simple soil bacterium to industrial protein production host , 2007, Applied Microbiology and Biotechnology.

[26]  C. Thermes,et al.  Cobalamin (vitamin B12) biosynthesis: identification and characterization of a Bacillus megaterium cobI operon. , 1998, The Biochemical journal.

[27]  C. Wittmann,et al.  High yield production of extracellular recombinant levansucrase by Bacillus megaterium , 2013, Applied Microbiology and Biotechnology.

[28]  R. Breaker,et al.  Gene regulation by riboswitches , 2004, Nature Reviews Molecular Cell Biology.

[29]  C. Wittmann,et al.  Getting the big beast to work--systems biotechnology of Bacillus megaterium for novel high-value proteins. , 2013, Journal of biotechnology.

[30]  M. Warren,et al.  Enzymatic synthesis and structure of precorrin-3, a trimethyldipyrrocorphin intermediate in vitamin B12 biosynthesis. , 1992, Biochemistry.

[31]  B. Atshaves,et al.  Multienzyme Synthesis and Structure of Factor S3 , 1993 .

[32]  D. Jahn,et al.  Metabolic engineering of cobalamin (vitamin B12) production in Bacillus megaterium , 2009, Microbial biotechnology.

[33]  Ruma Banerjee,et al.  The many faces of vitamin B12: catalysis by cobalamin-dependent enzymes. , 2003, Annual review of biochemistry.

[34]  A. Munro,et al.  Bacillus megaterium Has Both a Functional BluB Protein Required for DMB Synthesis and a Related Flavoprotein That Forms a Stable Radical Species , 2013, PloS one.

[35]  Harvard Medical School,et al.  Characterization of the cobalamin (vitamin B12) biosynthetic genes of Salmonella typhimurium , 1993, Journal of bacteriology.

[36]  R. Pickersgill,et al.  An enzyme-trap approach allows isolation of intermediates in cobalamin biosynthesis , 2012, Nature chemical biology.