Management and dissemination of MS proteomic data with PROTICdb: Example of a quantitative comparison between methods of protein extraction
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Johann Joets | Daniel Jacob | Christine Hoogland | Olivier Langella | Michel Zivy | Benoît Valot | Thierry Balliau | Raphaël Flores | C. Hoogland | D. Jacob | O. Langella | J. Joets | Thierry Balliau | B. Valot | M. Zivy | R. Flores
[1] Hiren J. Joshi. MASCP Gator: an aggregation portal for the visualization of Arabidopsis proteomics data , 2012 .
[2] Robertson Craig,et al. TANDEM: matching proteins with tandem mass spectra. , 2004, Bioinformatics.
[3] Arek Kasprzyk,et al. BioMart: driving a paradigm change in biological data management , 2011, Database J. Biol. Databases Curation.
[4] Lennart Martens,et al. The Protein Identifier Cross-Referencing (PICR) service: reconciling protein identifiers across multiple source databases , 2007, BMC Bioinformatics.
[5] Robert Schmidt,et al. PhosPhAt: the Arabidopsis thaliana phosphorylation site database. An update , 2009, Nucleic Acids Res..
[6] M. Ashburner,et al. The OBO Foundry: coordinated evolution of ontologies to support biomedical data integration , 2007, Nature Biotechnology.
[7] Eric W. Deutsch,et al. File Formats Commonly Used in Mass Spectrometry Proteomics* , 2012, Molecular & Cellular Proteomics.
[8] Carole A. Goble,et al. Taverna: a tool for building and running workflows of services , 2006, Nucleic Acids Res..
[9] Wolfram Weckwerth,et al. ProMEX – a mass spectral reference database for plant proteomics , 2012, Front. Plant Sci..
[10] Junjun Zhang,et al. BioMart: a data federation framework for large collaborative projects , 2011, Database J. Biol. Databases Curation.
[11] Robert Burke,et al. ProteoWizard: open source software for rapid proteomics tools development , 2008, Bioinform..
[12] V. Méchin,et al. Total protein extraction with TCA-acetone. , 2007, Methods in molecular biology.
[13] Joachim Klose,et al. PROTEOMER: A workflow‐optimized laboratory information management system for 2‐D electrophoresis‐centered proteomics , 2009, Proteomics.
[14] Johann Joets,et al. PROTICdb: A web‐based application to store, track, query, and compare plant proteome data , 2005, Proteomics.
[15] Lennart Martens,et al. PRIDE: The proteomics identifications database , 2005, Proteomics.
[16] Qiuming Yao,et al. P3DB: An Integrated Database for Plant Protein Phosphorylation , 2012, Front. Plant Sci..
[17] Rolf Apweiler,et al. InterProScan: protein domains identifier , 2005, Nucleic Acids Res..
[18] Qi Sun,et al. PPDB, the Plant Proteomics Database at Cornell , 2008, Nucleic Acids Res..
[19] Luisa Montecchi-Palazzi,et al. The PSI-MOD community standard for representation of protein modification data , 2008, Nature Biotechnology.
[20] Ron D. Appel,et al. Current status of the SWISS-2DPAGE database , 1998, Nucleic Acids Res..
[21] Lincoln Stein,et al. The Plant Ontology Database: a community resource for plant structure and developmental stages controlled vocabulary and annotations , 2008, Nucleic Acids Res..
[22] Olivier Langella,et al. MassChroQ: A versatile tool for mass spectrometry quantification , 2011, Proteomics.
[23] N. Rolland,et al. AT_CHLORO: A Chloroplast Protein Database Dedicated to Sub-Plastidial Localization , 2012, Front. Plant Sci..
[24] Natalie I. Tasman,et al. A guided tour of the Trans‐Proteomic Pipeline , 2010, Proteomics.
[25] Johann Joets,et al. The PROTICdb database for 2-DE proteomics. , 2007, Methods in molecular biology.
[26] Frédérique Lisacek,et al. The World-2DPAGE Constellation to promote and publish gel-based proteomics data through the ExPASy server. , 2008, Journal of proteomics.
[27] T. Ganesan,et al. A simple and efficient method for processing of cell lysates for two‐dimensional gel electrophoresis , 2010, Electrophoresis.
[28] W. Konigsberg,et al. Removal of sodium dodecyl sulfate from proteins by ion-pair extraction. , 1983, Methods in enzymology.
[29] Pierre-Alain Binz,et al. The Make 2D‐DB II package: Conversion of federated two‐dimensional gel electrophoresis databases into a relational format and interconnection of distributed databases , 2003, Proteomics.
[30] Matthias Mann,et al. Analysis of High Accuracy, Quantitative Proteomics Data in the MaxQB Database , 2012, Molecular & Cellular Proteomics.
[31] Chris F. Taylor,et al. The work of the Human Proteome Organisation's Proteomics Standards Initiative (HUPO PSI). , 2006, Omics : a journal of integrative biology.