Genetic and Functional Analysis of Mitochondrial DNA‐Encoded Complex I Genes

Abstract: Mammalian mitochondrial NADH dehydrogenase (complex I) is a multimeric complex consisting of at least 45 subunits, 7 of which are encoded by mitochondrial DNA (mtDNA). The function of these subunits is largely unknown. We have established an efficient method to isolate and characterize cells carrying mutations in various mtDNA‐encoded complex I genes. With this method, 15 mouse cell lines with deficiencies in complex I‐dependent respiration were obtained, and two near‐homoplasmic mutations in mouse ND5 and ND6 genes were isolated. Furthermore, by generating a series of cell lines with the same nuclear background but different content of an mtDNA nonsense mutation, we analyzed the genetic and functional thresholds in mouse mitochondria. We found that in wild‐type cells, about 40% of ND5 mRNA is in excess of that required to support a normal rate of ND5 subunit synthesis. However, there is no indication of compensatory upsurge in either transcription or translation with the increase in the proportion of mutant ND5 genes. Interestingly, the highest ND5 protein synthesis rate was just sufficient to support the maximum complex I‐dependent respiration rate, suggesting a tight regulation at the translational level. In another line of research, we showed that the mitochondrial NADH‐quinone oxidoreductase of Saccharomyces cerevisiae (NDI1), although consisting of a single subunit, can completely restore respiratory NADH dehydrogenase activity in mutant human cells that lack the essential mtDNA‐encoded subunit ND4. In particular, in these transfected cells, the yeast enzyme becomes integrated into the human respiratory chain and fully restores the capacity of the cells to grow in galactose medium.

[1]  T. Flotte,et al.  A single-subunit NADH-quinone oxidoreductase renders resistance to mammalian nerve cells against complex I inhibition. , 2003, Molecular therapy : the journal of the American Society of Gene Therapy.

[2]  T. Yagi,et al.  The ND5 subunit was labeled by a photoaffinity analogue of fenpyroximate in bovine mitochondrial complex I. , 2003, Biochemistry.

[3]  John E. Walker,et al.  Definition of the Nuclear Encoded Protein Composition of Bovine Heart Mitochondrial Complex I , 2002, The Journal of Biological Chemistry.

[4]  B. Van Houten,et al.  Mitochondrial DNA repair and aging. , 2002, Mutation research.

[5]  M. L. Genova,et al.  Role of Mitochondria in Oxidative Stress and Aging , 2002, Annals of the New York Academy of Sciences.

[6]  P. Chinnery,et al.  Leber hereditary optic neuropathy , 2002, Journal of medical genetics.

[7]  A. Matsuno-Yagi,et al.  Lack of Complex I Activity in Human Cells Carrying a Mutation in MtDNA-encoded ND4 Subunit Is Corrected by theSaccharomyces cerevisiae NADH-Quinone Oxidoreductase (NDI1) Gene* , 2001, The Journal of Biological Chemistry.

[8]  J. Smeitink,et al.  Respiratory chain complex I deficiency. , 2001, American journal of medical genetics.

[9]  T. Flotte,et al.  Use of the NADH-Quinone Oxidoreductase (NDI1) Gene ofSaccharomyces cerevisiae as a Possible Cure for Complex I Defects in Human Cells* , 2000, The Journal of Biological Chemistry.

[10]  G. Attardi,et al.  Tight Control of Respiration by NADH Dehydrogenase ND5 Subunit Gene Expression in Mouse Mitochondria , 2000, Molecular and Cellular Biology.

[11]  A. Matsuno-Yagi,et al.  Modulation of oxidative phosphorylation of human kidney 293 cells by transfection with the internal rotenone-insensitive NADH-quinone oxidoreductase (NDI1) gene of Saccharomyces cerevisiae. , 1999, Biochimica et biophysica acta.

[12]  D. Thorburn,et al.  Respiratory chain complex I deficiency , 1999, Neurology.

[13]  G. Attardi,et al.  The mtDNA‐encoded ND6 subunit of mitochondrial NADH dehydrogenase is essential for the assembly of the membrane arm and the respiratory function of the enzyme , 1998, The EMBO journal.

[14]  A. Matsuno-Yagi,et al.  Molecular remedy of complex I defects: rotenone-insensitive internal NADH-quinone oxidoreductase of Saccharomyces cerevisiae mitochondria restores the NADH oxidase activity of complex I-deficient mammalian cells. , 1998, Proceedings of the National Academy of Sciences of the United States of America.

[15]  N Grigorieff,et al.  Three-dimensional structure of bovine NADH:ubiquinone oxidoreductase (complex I) at 22 A in ice. , 1998, Journal of molecular biology.

[16]  E. Shoubridge,et al.  Mitochondrial genetics and human disease , 1996, BioEssays : news and reviews in molecular, cellular and developmental biology.

[17]  G. Hofhaus,et al.  Efficient selection and characterization of mutants of a human cell line which are defective in mitochondrial DNA-encoded subunits of respiratory NADH dehydrogenase , 1995, Molecular and cellular biology.

[18]  G. Hofhaus,et al.  Lack of assembly of mitochondrial DNA‐encoded subunits of respiratory NADH dehydrogenase and loss of enzyme activity in a human cell mutant lacking the mitochondrial ND4 gene product. , 1993, The EMBO journal.

[19]  D. Wallace,et al.  Nonviability of cells with oxidative defects in galactose medium: a screening test for affected patient fibroblasts. , 1992, Biochemical medicine and metabolic biology.

[20]  J. Walker,et al.  The NADH:ubiquinone oxidoreductase (complex I) of respiratory chains , 1992, Quarterly Reviews of Biophysics.

[21]  L. Grivell,et al.  Primary structure and import pathway of the rotenone-insensitive NADH-ubiquinone oxidoreductase of mitochondria from Saccharomyces cerevisiae. , 1992, European journal of biochemistry.

[22]  J. Hayashi,et al.  Introduction of disease-related mitochondrial DNA deletions into HeLa cells lacking mitochondrial DNA results in mitochondrial dysfunction. , 1991, Proceedings of the National Academy of Sciences of the United States of America.

[23]  K. Leonard,et al.  Electron microscopic analysis of the peripheral and membrane parts of mitochondrial NADH dehydrogenase (complex I). , 1991, Journal of molecular biology.

[24]  P. Polosa,et al.  Distinctive pattern and translational control of mitochondrial protein synthesis in rat brain synaptic endings. , 1991, The Journal of biological chemistry.

[25]  M. King,et al.  Human cells lacking mtDNA: repopulation with exogenous mitochondria by complementation. , 1989, Science.

[26]  L. Grivell,et al.  Purification and characterization of a rotenone-insensitive NADH:Q6 oxidoreductase from mitochondria of Saccharomyces cerevisiae. , 1988, European journal of biochemistry.

[27]  R. Doolittle,et al.  URF6, last unidentified reading frame of human mtDNA, codes for an NADH dehydrogenase subunit. , 1986, Science.

[28]  R. Doolittle,et al.  Six unidentified reading frames of human mitochondrial DNA encode components of the respiratory-chain NADH dehydrogenase , 1985, Nature.

[29]  G. Attardi,et al.  Reversible tenfod reduction in mitochondrial DNA content of human cells treated with ethidium bromide , 1978, Molecular and General Genetics MGG.

[30]  M. King Use of ethidium bromide to manipulate ratio of mutated and wild-type mitochondrial DNA in cultured cells. , 1996, Methods in enzymology.

[31]  A. Chomyn Platelet-mediated transformation of human mitochondrial DNA-less cells. , 1996, Methods in enzymology.