Virus Detection by High-Throughput Sequencing of Small RNAs: Large-Scale Performance Testing of Sequence Analysis Strategies.
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S. Massart | É. Várallyay | E. Verdin | T. Candresse | M. Westenberg | R. Glover | J. Kreuze | D. Šafářová | H. J. Maree | A. Haegeman | P. H. Schneeberger | A. Ruiz-García | K. De Jonghe | A. Olmos | Y. Brostaux | N. Sela | François J. Maclot | E. Vainio | V. Maliogka | S. Turco | M. Pooggin | M. Chiumenti | J. Reynard | L. Lotos | I. Koloniuk | T. Olivier | P. Komínek | D. Kutnjak | François Maclot
[1] H. Czosnek,et al. Historical Perspective, Development and Applications of Next-Generation Sequencing in Plant Virology , 2014, Viruses.
[2] E. Birney,et al. Velvet: algorithms for de novo short read assembly using de Bruijn graphs. , 2008, Genome research.
[3] Neil Boonham,et al. Next-generation sequencing and metagenomic analysis: a universal diagnostic tool in plant virology. , 2009, Molecular plant pathology.
[4] P. Komínek. Distribution of grapevine viruses in vineyards of the Czech Republic. , 2008 .
[5] Steven J. M. Jones,et al. Abyss: a Parallel Assembler for Short Read Sequence Data Material Supplemental Open Access , 2022 .
[6] L. Farinelli,et al. Evasion of Short Interfering RNA-Directed Antiviral Silencing in Musa acuminata Persistently Infected with Six Distinct Banana Streak Pararetroviruses , 2014, Journal of Virology.
[7] Laurent Farinelli,et al. De Novo Reconstruction of Consensus Master Genomes of Plant RNA and DNA Viruses from siRNAs , 2014, PloS one.
[8] P. Roumagnac,et al. Plant Virus Metagenomics: Advances in Virus Discovery. , 2015, Phytopathology.
[9] Reinhard Simon,et al. Complete viral genome sequence and discovery of novel viruses by deep sequencing of small RNAs: a generic method for diagnosis, discovery and sequencing of viruses. , 2009, Virology.
[10] Martin Vingron,et al. Oases: robust de novo RNA-seq assembly across the dynamic range of expression levels , 2012, Bioinform..
[11] Thierry Candresse,et al. Finding and identifying the viral needle in the metagenomic haystack: trends and challenges , 2015, Front. Microbiol..
[12] D. Rees,et al. High-throughput sequencing reveals small RNAs involved in ASGV infection , 2014, BMC Genomics.
[13] A. Katzourakis,et al. Endogenous viruses: Connecting recent and ancient viral evolution. , 2015, Virology.
[14] D. Golino,et al. Comparison of Next Generation Sequencing vs . Biological Indexing for the Optimal 1 Detection of Viral Pathogens in Grapevine 2 3 4 , 2015 .
[15] Thierry Candresse,et al. A Framework for the Evaluation of Biosecurity, Commercial, Regulatory, and Scientific Impacts of Plant Viruses and Viroids Identified by NGS Technologies , 2016, Front. Microbiol..
[16] J. Burger,et al. Next-generation sequencing for virus detection: covering all the bases , 2016, Virology Journal.
[17] Richard Durbin,et al. Sequence analysis Fast and accurate short read alignment with Burrows – Wheeler transform , 2009 .
[18] Olivier Voinnet,et al. Antiviral Immunity Directed by Small RNAs , 2007, Cell.
[19] Jonathan Pevsner,et al. Basic Local Alignment Search Tool (BLAST) , 2005 .
[20] S. Massart,et al. Current impact and future directions of high throughput sequencing in plant virus diagnostics. , 2014, Virus research.
[21] J. Kreuze,et al. Complete genome sequences of new divergent potato virus X isolates and discrimination between strains in a mixed infection using small RNAs sequencing approach. , 2014, Virus research.
[22] Yongjiang Zhang,et al. Identification of viruses and viroids by next-generation sequencing and homology-dependent and homology-independent algorithms. , 2015, Annual review of phytopathology.
[23] Adam Hunter,et al. An internet-based bioinformatics toolkit for plant biosecurity diagnosis and surveillance of viruses and viroids , 2017, BMC Bioinformatics.
[24] J. Valkonen,et al. Diagnosis and discovery of fungal viruses using deep sequencing of small RNAs. , 2015, The Journal of general virology.