Restriction fragment length polymorphism (RFLP) of the X chromosome linked glucose-6-phosphate dehydrogenase (G6PD) locus in India

Study: Haplotypes linked to glucose-6-phosphate dehydrogenase (G6PD) genotypes were defined by studying six intragenic restriction fragment length polymorphisms (RFLPs) in 141 G6PD deficient and 252 normal chromosomes. Results: Only four of the 64 possible haplotypes were observed, indicating marked linkage disequilibrium. All the G6PD deficient mutations were associated with either haplotype I or VII, which are similar to the common G6PD B variant observed in the present study except the G6PD Namoru mutation which corresponded to mainly haplotype VIIa where a Nla III restriction site was created due to this mutation. Conclusion: The limited number and low haplotype diversity probably indicates a strong selective pressure on the G6PD gene.

[1]  D. Mohanty,et al.  Molecular heterogeneity of glucose-6-phosphate dehydrogenase deficiency among the tribals in Western India. , 2009, Blood cells, molecules & diseases.

[2]  K. Ghosh,et al.  A novel R198H mutation in the glucose-6-phosphate dehydrogenase gene in the tribal groups of the Nilgiris in Southern India , 2008, Journal of Human Genetics.

[3]  M. Cappellini,et al.  Glucose-6-phosphate dehydrogenase deficiency , 2008, The Lancet.

[4]  L. Botigué,et al.  G6PD Deficient Alleles and Haplotype Analysis of Human G6PD Locus in São Tomé e Príncipe (West Africa) , 2007, Human biology.

[5]  L. Manco,et al.  Mutations and haplotype diversity in 70 Portuguese G6PD-deficient individuals: an overview on the origin and evolution of mutated alleles , 2007, Haematologica.

[6]  D. Mohanty,et al.  G6PD Namoru (208 T→ C) is the major polymorphic variant in the tribal populations in southern India , 2007, British journal of haematology.

[7]  Laurent Excoffier,et al.  Arlequin (version 3.0): An integrated software package for population genetics data analysis , 2005, Evolutionary bioinformatics online.

[8]  D. Mohanty,et al.  Molecular basis of G6PD deficiency in India. , 2004, Blood cells, molecules & diseases.

[9]  S. Saad,et al.  Mild hemolysis in a girl with G6PD Sumaré (class I variant) associated with G6PD A-. , 2003, Blood cells, molecules & diseases.

[10]  A. Freire,et al.  Glucose-6-phosphate dehydrogenase deficiency in Portugal: biochemical and mutational profiles, heterogeneity, and haplotype association. , 2002, Blood cells, molecules & diseases.

[11]  P. Majumder Ethnic populations of India as seen from an evolutionary perspective , 2001, Journal of Biosciences.

[12]  R. Cann Genetic Clues to Dispersal in Human Populations: Retracing the Past from the Present , 2001, Science.

[13]  T. Vulliamy,et al.  A new glucose-6-phosphate dehydrogenase variant, G6PD Orissa (44 Ala-->Gly), is the major polymorphic variant in tribal populations in India. , 1995, American journal of human genetics.

[14]  E. Beutler Study of glucose‐6‐phosphate dehydrogenase: History and molecular biology , 1993, American journal of hematology.

[15]  J. Prchal,et al.  The origin of glucose-6-phosphate-dehydrogenase (G6PD) polymorphisms in African-Americans. , 1992, American journal of human genetics.

[16]  T. Vulliamy,et al.  Polymorphic sites in the African population detected by sequence analysis of the glucose-6-phosphate dehydrogenase gene outline the evolution of the variants A and A-. , 1991, Proceedings of the National Academy of Sciences of the United States of America.

[17]  T. Vulliamy,et al.  Linkage disequilibrium of polymorphic sites in the G6PD gene in African populations and the origin of G6PD A-. , 1991, Gene geography : a computerized bulletin on human gene frequencies.

[18]  E. Beutler,et al.  The NT 1311 polymorphism of G6PD: G6PD Mediterranean mutation may have originated independently in Europe and Asia. , 1990, American journal of human genetics.

[19]  E. Beutler,et al.  Linkage between a PvuII restriction fragment length polymorphism and G6PD A-202A/376G: evidence for a single origin of the common G6PD A — mutation , 1990, Human Genetics.

[20]  J. Prchal,et al.  Molecular heterogeneity of glucose-6-phosphate dehydrogenase A-. Blood , 1989 .

[21]  E. Robson The human gene map. , 1988, Philosophical transactions of the Royal Society of London. Series B, Biological sciences.

[22]  Tizhen Yan,et al.  Incidence and complete molecular characterization of glucose-6-phosphate dehydrogenase deficiency in the Guangxi Zhuang autonomous region of southern China: description of four novel mutations. , 2006, Haematologica.

[23]  A. Palma,et al.  Genotype and phenotype correlation in glucose-6-phosphate dehydrogenase deficiency. , 2001, Haematologica.

[24]  T. Vulliamy,et al.  Multiple glucose 6-phosphate dehydrogenase-deficient variants correlate with malaria endemicity in the Vanuatu archipelago (southwestern Pacific). , 1995, American journal of human genetics.

[25]  E. Beutler G6PD deficiency. , 1994, Blood.

[26]  E. Beutler The molecular biology of G6PD variants and other red cell enzyme defects. , 1992, Annual review of medicine.

[27]  V. McKusick The gene map of Homo sapiens: status and prospectus. , 1986, Cold Spring Harbor symposia on quantitative biology.