The Role of Evolution in Shaping Ecological Networks.

The structure of ecological networks reflects the evolutionary history of their biotic components, and their dynamics are strongly driven by ecoevolutionary processes. Here, we present an appraisal of recent relevant research, in which the pervasive role of evolution within ecological networks is manifest. Although evolutionary processes are most evident at macroevolutionary scales, they are also important drivers of local network structure and dynamics. We propose components of a blueprint for further research, emphasising process-based models, experimental evolution, and phenotypic variation, across a range of distinct spatial and temporal scales. Evolutionary dimensions are required to advance our understanding of foundational properties of community assembly and to enhance our capability of predicting how networks will respond to impending changes.

[1]  J. Tylianakis,et al.  Reshaping our understanding of species' roles in landscape-scale networks. , 2019, Ecology letters.

[2]  Jon Norberg,et al.  The evolutionary ecology of metacommunities. , 2008, Trends in ecology & evolution.

[3]  J. Thompson,et al.  The Coevolutionary Process , 1994 .

[4]  J. Hearn,et al.  Whole-genome data reveal the complex history of a diverse ecological community , 2017, Proceedings of the National Academy of Sciences.

[5]  Lauren C. Ponisio,et al.  Coevolution leaves a weak signal on ecological networks , 2017 .

[6]  Judith L Bronstein,et al.  Mutualisms in a changing world: an evolutionary perspective. , 2010, Ecology letters.

[7]  Anurag A. Agrawal,et al.  Phenotypic Plasticity in the Interactions and Evolution of Species , 2001, Science.

[8]  M. C. Urban,et al.  Evolving metacommunities: toward an evolutionary perspective on metacommunities. , 2006, Ecology.

[9]  Luis J. Gilarranz,et al.  The phylogenetic structure of plant-pollinator networks increases with habitat size and isolation. , 2016, Ecology letters.

[10]  Florian Altermatt,et al.  Predicting novel trophic interactions in a non-native world. , 2013, Ecology letters.

[11]  Hywel T. P. Williams,et al.  Coevolutionary diversification creates nested-modular structure in phage–bacteria interaction networks , 2013, Interface Focus.

[12]  A. Agrawal,et al.  Genome editing retraces the evolution of toxin resistance in the monarch butterfly , 2019, Nature.

[13]  COEVOLUTIONARY ALTERNATION IN ANTAGONISTIC INTERACTIONS , 2006 .

[14]  L. Harmon,et al.  A novel Bayesian method for inferring and interpreting the dynamics of adaptive landscapes from phylogenetic comparative data , 2014, bioRxiv.

[15]  Jennifer A Dunne,et al.  Cascading extinctions and community collapse in model food webs , 2009, Philosophical Transactions of the Royal Society B: Biological Sciences.

[16]  M. Pigliucci,et al.  Phenotypic plasticity and evolution by genetic assimilation , 2006, Journal of Experimental Biology.

[17]  Carol M. Frost,et al.  Phylogenetic diversity and co-evolutionary signals among trophic levels change across a habitat edge. , 2015, The Journal of animal ecology.

[18]  M. Mayfield,et al.  Opposing effects of competitive exclusion on the phylogenetic structure of communities. , 2010, Ecology letters.

[19]  Michael S. Barker,et al.  The butterfly plant arms-race escalated by gene and genome duplications , 2014, Proceedings of the National Academy of Sciences.

[20]  F. Perfectti,et al.  Fitness consequences of centrality in mutualistic individual-based networks , 2012, Proceedings of the Royal Society B: Biological Sciences.

[21]  Elizabeth Elle,et al.  Traits and phylogenetic history contribute to network structure across Canadian plant–pollinator communities , 2014, Oecologia.

[22]  M. C. Urban,et al.  Community monopolization: local adaptation enhances priority effects in an evolving metacommunity , 2009, Proceedings of the Royal Society B: Biological Sciences.

[23]  Julie Messier,et al.  Fitness of multidimensional phenotypes in dynamic adaptive landscapes. , 2015, Trends in ecology & evolution.

[24]  J. Bascompte,et al.  Effects of phenotypic complementarity and phylogeny on the nested structure of mutualistic networks , 2007 .

[25]  B. Drossel,et al.  Evolutionary food web model based on body masses gives realistic networks with permanent species turnover , 2014, Scientific Reports.

[26]  Akihiko Mougi,et al.  Species-rich networks and eco-evolutionary synthesis at the metacommunity level , 2017, Nature Ecology &Evolution.

[27]  Masaki Yasugi,et al.  Does genomic variation in a foundation species predict arthropod community structure in a riparian forest? , 2018, Molecular ecology.

[28]  Pedro Jordano,et al.  Indirect effects drive coevolution in mutualistic networks , 2017, Nature.

[29]  B. Koskella,et al.  Experimental coevolution of species interactions. , 2013, Trends in ecology & evolution.

[30]  Miguel A. Fortuna,et al.  Deciphering the Interdependence between Ecological and Evolutionary Networks. , 2018, Trends in ecology & evolution.

[31]  Matthew W. Pennell,et al.  An integrative view of phylogenetic comparative methods: connections to population genetics, community ecology, and paleobiology , 2013, Annals of the New York Academy of Sciences.

[32]  J. Bascompte,et al.  Global change and species interactions in terrestrial ecosystems. , 2008, Ecology letters.

[33]  Paulo R Guimarães,et al.  Adaptive Networks for Restoration Ecology. , 2018, Trends in ecology & evolution.

[34]  L. Revell,et al.  Phylogenetic signal, evolutionary process, and rate. , 2008, Systematic biology.

[35]  N. Loeuille Influence of evolution on the stability of ecological communities. , 2010, Ecology letters.

[36]  Stefano Allesina,et al.  Selection on stability across ecological scales. , 2015, Trends in ecology & evolution.

[37]  Martijn Egas,et al.  Eco‐evolutionary feedbacks—Theoretical models and perspectives , 2018, Functional Ecology.

[38]  Jordi Bascompte,et al.  COEVOLUTION AND THE ARCHITECTURE OF MUTUALISTIC NETWORKS , 2013, Evolution; international journal of organic evolution.

[39]  J. G. Burleigh,et al.  Synthesis of phylogeny and taxonomy into a comprehensive tree of life , 2014, Proceedings of the National Academy of Sciences.

[40]  M. Aizen,et al.  Coevolution Slows the Disassembly of Mutualistic Networks , 2018, The American Naturalist.

[41]  A. Mougi Natural selection contributes to food web stability , 2020, PloS one.

[42]  Cecilia S. Andreazzi,et al.  Network Structure and Selection Asymmetry Drive Coevolution in Species-Rich Antagonistic Interactions , 2017, The American Naturalist.

[43]  Dominique Gravel,et al.  Beyond species: why ecological interaction networks vary through space and time , 2014, bioRxiv.

[44]  A. Agrawal,et al.  Phylogeny, ecology, and the coupling of comparative and experimental approaches. , 2012, Trends in ecology & evolution.

[45]  H. Morlon,et al.  Estimating the Effect of Competition on Trait Evolution Using Maximum Likelihood Inference. , 2016, Systematic biology.

[46]  O. Bjørnstad,et al.  Quantitative evolutionary patterns in bipartite networks: Vicariance, phylogenetic tracking or diffuse co‐evolution? , 2017 .

[47]  Anthony R. Ives,et al.  Generalized linear mixed models for phylogenetic analyses of community structure , 2011 .

[48]  Colin Fontaine,et al.  Stability of Ecological Communities and the Architecture of Mutualistic and Trophic Networks , 2010, Science.

[49]  N. Loeuille,et al.  Evolution in Metacommunities: On the Relative Importance of Species Sorting and Monopolization in Structuring Communities , 2008, The American Naturalist.

[50]  Timothée Poisot,et al.  How ecological networks evolve , 2016, bioRxiv.

[51]  Carlos J. Melián,et al.  Eco-evolutionary feedbacks promote fluctuating selection and long-term stability of antagonistic networks , 2018, Proceedings of the Royal Society B: Biological Sciences.

[52]  S. Pavoine,et al.  Predicting the impacts of co-extinctions on phylogenetic diversity in mutualistic networks , 2018 .

[53]  J. Cook,et al.  Convergent structure of multitrophic communities over three continents. , 2013, Ecology letters.

[54]  R. Gomulkiewicz,et al.  When Is Correlation Coevolution? , 2010, The American Naturalist.

[55]  Guy Woodward,et al.  Emerging horizons in biodiversity and ecosystem functioning research. , 2009, Trends in ecology & evolution.

[56]  S. J. Arnold Phenotypic Evolution: The Ongoing Synthesis , 2014, The American Naturalist.

[57]  Rudolf P. Rohr,et al.  Components of Phylogenetic Signal in Antagonistic and Mutualistic Networks , 2014, The American Naturalist.

[58]  S. Schreiber,et al.  Evolution in a Community Context: Trait Responses to Multiple Species Interactions* , 2018, The American Naturalist.

[59]  Matthew W. Pennell,et al.  Detecting the macroevolutionary signal of species interactions , 2019, Journal of evolutionary biology.

[60]  Nathan J B Kraft,et al.  Phylogenetic relatedness and the determinants of competitive outcomes. , 2014, Ecology letters.

[61]  Mercedes Pascual,et al.  The multilayer nature of ecological networks , 2015, Nature Ecology &Evolution.

[62]  Sergi Valverde,et al.  Phage-bacteria infection networks. , 2013, Trends in microbiology.

[63]  Rudolf P. Rohr,et al.  Ecophylogenetics: advances and perspectives , 2012, Biological reviews of the Cambridge Philosophical Society.

[64]  Eric P Palkovacs,et al.  Eco-evolutionary feedbacks in community and ecosystem ecology: interactions between the ecological theatre and the evolutionary play , 2009, Philosophical Transactions of the Royal Society B: Biological Sciences.

[65]  Paulo R. Guimarães,et al.  A Network Perspective for Community Assembly , 2019, Front. Ecol. Evol..

[66]  N. Loeuille,et al.  Emergence of complex food web structure in community evolution models , 2009 .

[67]  Salvatore J. Agosta,et al.  On ecological fitting, plant-insect associations, herbivore host shifts, and host plant selection , 2006 .

[68]  P. Guimarães,et al.  Unifying host-associated diversification processes using butterfly–plant networks , 2018, Nature Communications.

[69]  Jordi Bascompte,et al.  Non-random coextinctions in phylogenetically structured mutualistic networks , 2007, Nature.

[70]  A new dimension: Evolutionary food web dynamics in two dimensional trait space. , 2016, Journal of theoretical biology.

[71]  E. Decaestecker,et al.  Analysing eco‐evolutionary dynamics—The challenging complexity of the real world , 2019, Functional Ecology.

[72]  J. Feder,et al.  Sequential Sympatric Speciation Across Trophic Levels , 2009, Science.

[73]  Jordi Bascompte,et al.  Compartments in a marine food web associated with phylogeny, body mass, and habitat structure. , 2009, Ecology letters.

[74]  Dominique Gravel,et al.  The dissimilarity of species interaction networks. , 2012, Ecology letters.

[75]  M. Larsson,et al.  With or without you: Effects of the concurrent range expansion of an herbivore and its natural enemy on native species interactions , 2018 .

[76]  Neo D. Martinez,et al.  Community assembly on isolated islands: macroecology meets evolution , 2016 .

[77]  J. Delong,et al.  How fast is fast? Eco‐evolutionary dynamics and rates of change in populations and phenotypes , 2016, Ecology and evolution.

[78]  Miguel A. Fortuna,et al.  Genetic specificity of a plant–insect food web: Implications for linking genetic variation to network complexity , 2016, Proceedings of the National Academy of Sciences.

[79]  Ali H. Sayed,et al.  Adaptive Networks , 2014, Proceedings of the IEEE.

[80]  Amaury Lambert,et al.  A Unifying Comparative Phylogenetic Framework Including Traits Coevolving Across Interacting Lineages. , 2016, Systematic biology.

[81]  H. Toju,et al.  Imbalance of Predator and Prey Armament: Geographic Clines in Phenotypic Interface and Natural Selection , 2005, The American Naturalist.

[82]  M. Araújo,et al.  Multiple interactions networks: towards more realistic descriptions of the web of life , 2018 .

[83]  Nicolas Loeuille,et al.  Modelling the ecology and evolution of communities: a review of past achievements, current efforts, and future promises , 2012 .

[84]  Nicolas Loeuille,et al.  Evolutionary emergence of size-structured food webs. , 2005, Proceedings of the National Academy of Sciences of the United States of America.

[85]  Sebastian J Schreiber,et al.  How variation between individuals affects species coexistence. , 2016, Ecology letters.

[86]  T. Schoener The Newest Synthesis: Understanding the Interplay of Evolutionary and Ecological Dynamics , 2011, Science.

[87]  S. J. Arnold,et al.  The adaptive landscape as a conceptual bridge between micro- and macroevolution , 2004, Genetica.

[88]  Sérgio Timóteo,et al.  Multilayer networks reveal the spatial structure of seed-dispersal interactions across the Great Rift landscapes , 2018, Nature Communications.

[89]  D. Janzen WHEN IS IT COEVOLUTION? , 1980, Evolution; international journal of organic evolution.

[90]  L. De Meester,et al.  Eco-evolutionary partitioning metrics: assessing the importance of ecological and evolutionary contributions to population and community change. , 2016, Ecology letters.

[91]  J. Veech,et al.  Forbidden versus permitted interactions: Disentangling processes from patterns in ecological network analysis , 2017, Ecology and evolution.

[92]  M. Loreau,et al.  Biodiversity and ecosystem productivity in a fluctuating environment: the insurance hypothesis. , 1999, Proceedings of the National Academy of Sciences of the United States of America.

[93]  Josef C. Uyeda,et al.  The million-year wait for macroevolutionary bursts , 2011, Proceedings of the National Academy of Sciences.

[94]  R. Lenski,et al.  Linking genetic change to community evolution: insights from studies of bacteria and bacteriophage , 2000 .

[95]  Charles Ofria,et al.  Evolving Digital Ecological Networks , 2013, PLoS Comput. Biol..

[96]  Jennifer A. Dunne,et al.  The Network Structure of Food Webs , 2005 .

[97]  S. Aitken,et al.  Evolutionary and plastic responses to climate change in terrestrial plant populations , 2013, Evolutionary applications.

[98]  Blake Matthews,et al.  Evolution in a Community Context: On Integrating Ecological Interactions and Macroevolution. , 2017, Trends in ecology & evolution.

[99]  R. Gomulkiewicz,et al.  Gene flow and geographically structured coevolution , 1999, Proceedings of the Royal Society of London. Series B: Biological Sciences.