Efficient gene targeting in Drosophila by direct embryo injection with zinc-finger nucleases

We report very high gene targeting frequencies in Drosophila by direct embryo injection of mRNAs encoding specific zinc-finger nucleases (ZFNs). Both local mutagenesis via nonhomologous end joining (NHEJ) and targeted gene replacement via homologous recombination (HR) have been achieved in up to 10% of all targets at a given locus. In embryos that are wild type for DNA repair, the products are dominated by NHEJ mutations. In recipients deficient in the NHEJ component, DNA ligase IV, the majority of products arise by HR with a coinjected donor DNA, with no loss of overall efficiency in target modification. We describe the application of the ZFN injection procedure to mutagenesis by NHEJ of 2 new genes in Drosophila melanogaster: coil and pask. Pairs of novel ZFNs designed for targets within those genes led to the production of null mutations at each locus. The injection procedure is much more rapid than earlier approaches and makes possible the generation and recovery of targeted gene alterations at essentially any locus within 2 fly generations.

[1]  J. Gall,et al.  Coilin is essential for Cajal body organization in Drosophila melanogaster. , 2009, Molecular biology of the cell.

[2]  V. Hartenstein,et al.  Drosophila melanogaster , 2005 .

[3]  Ronnie J Winfrey,et al.  Rapid "open-source" engineering of customized zinc-finger nucleases for highly efficient gene modification. , 2008, Molecular cell.

[4]  Toni Cathomen,et al.  Zinc-finger nucleases: the next generation emerges. , 2008, Molecular therapy : the journal of the American Society of Gene Therapy.

[5]  J. Orange,et al.  Establishment of HIV-1 resistance in CD4+ T cells by genome editing using zinc-finger nucleases , 2008, Nature Biotechnology.

[6]  M. Noyes,et al.  Targeted gene inactivation in zebrafish using engineered zinc-finger nucleases , 2008, Nature Biotechnology.

[7]  T. Hocking,et al.  Heritable Targeted Gene Disruption in Zebrafish Using Designed Zinc Finger Nucleases , 2008, Nature Biotechnology.

[8]  Toni Cathomen,et al.  Unexpected failure rates for modular assembly of engineered zinc fingers , 2008, Nature Methods.

[9]  A. Klug,et al.  Targeted gene knockout in mammalian cells by using engineered zinc-finger nucleases , 2008, Proceedings of the National Academy of Sciences.

[10]  J. Rutter,et al.  The role of PAS kinase in regulating energy metabolism , 2008, IUBMB life.

[11]  M. Lieber,et al.  The Mechanism of Human Nonhomologous DNA End Joining* , 2008, Journal of Biological Chemistry.

[12]  D. Carroll,et al.  Gene targeting in Drosophila and Caenorhabditis elegans with zinc-finger nucleases. , 2008, Methods in molecular biology.

[13]  Luigi Naldini,et al.  Gene editing in human stem cells using zinc finger nucleases and integrase-defective lentiviral vector delivery , 2007, Nature Biotechnology.

[14]  Y. Rong,et al.  A Genetic Screen For DNA Double-Strand Break Repair Mutations in Drosophila , 2007, Genetics.

[15]  Toni Cathomen,et al.  Structure-based redesign of the dimerization interface reduces the toxicity of zinc-finger nucleases , 2007, Nature Biotechnology.

[16]  Adam James Waite,et al.  An improved zinc-finger nuclease architecture for highly specific genome editing , 2007, Nature Biotechnology.

[17]  Fyodor D Urnov,et al.  Targeted gene addition into a specified location in the human genome using designed zinc finger nucleases , 2007, Proceedings of the National Academy of Sciences.

[18]  W. Engels,et al.  Multiple-Pathway Analysis of Double-Strand Break Repair Mutations in Drosophila , 2007, PLoS genetics.

[19]  Dana Carroll,et al.  Induction and repair of zinc-finger nuclease-targeted double-strand breaks in Caenorhabditis elegans somatic cells , 2006, Proceedings of the National Academy of Sciences.

[20]  Dana Carroll,et al.  Design, construction and in vitro testing of zinc finger nucleases , 2006, Nature Protocols.

[21]  M. Bibikova,et al.  Efficient Gene Targeting in Drosophila With Zinc-Finger Nucleases , 2006, Genetics.

[22]  C. Murphy,et al.  The Drosophila melanogaster Cajal body , 2006, The Journal of cell biology.

[23]  M. Porteus,et al.  Mammalian gene targeting with designed zinc finger nucleases. , 2006, Molecular therapy : the journal of the American Society of Gene Therapy.

[24]  Pilar Blancafort,et al.  Development of Zinc Finger Domains for Recognition of the 5′-CNN-3′ Family DNA Sequences and Their Use in the Construction of Artificial Transcription Factors* , 2005, Journal of Biological Chemistry.

[25]  David A Wright,et al.  High-frequency homologous recombination in plants mediated by zinc-finger nucleases. , 2005, The Plant journal : for cell and molecular biology.

[26]  Dana Carroll,et al.  Gene targeting using zinc finger nucleases , 2005, Nature Biotechnology.

[27]  Jeffrey C. Miller,et al.  Highly efficient endogenous human gene correction using designed zinc-finger nucleases , 2005, Nature.

[28]  Mario R. Capecchi,et al.  Gene targeting in mice: functional analysis of the mammalian genome for the twenty-first century , 2005, Nature Reviews Genetics.

[29]  Toni Cathomen,et al.  Custom zinc-finger nucleases for use in human cells. , 2005, Molecular therapy : the journal of the American Society of Gene Therapy.

[30]  Dana Carroll,et al.  Targeted mutagenesis using zinc-finger nucleases in Arabidopsis. , 2005, Proceedings of the National Academy of Sciences of the United States of America.

[31]  M. McVey,et al.  End-Joining Repair of Double-Strand Breaks in Drosophila melanogaster Is Largely DNA Ligase IV Independent , 2004, Genetics.

[32]  J. Durocher,et al.  Mutation detection using Surveyor nuclease. , 2004, BioTechniques.

[33]  Michele P Calos,et al.  Construction of transgenic Drosophila by using the site-specific integrase from phage phiC31. , 2004, Genetics.

[34]  J. Gall The centennial of the Cajal body , 2003, Nature Reviews Molecular Cell Biology.

[35]  L. Mullenders,et al.  The Drosophila melanogaster DNA Ligase IV gene plays a crucial role in the repair of radiation-induced DNA double-strand breaks and acts synergistically with Rad54. , 2003, Genetics.

[36]  Dana Carroll,et al.  Enhancing Gene Targeting with Designed Zinc Finger Nucleases , 2003, Science.

[37]  David Baltimore,et al.  Chimeric Nucleases Stimulate Gene Targeting in Human Cells , 2003, Science.

[38]  Pilar Blancafort,et al.  Evaluation of a modular strategy for the construction of novel polydactyl zinc finger DNA-binding proteins. , 2003, Biochemistry.

[39]  Dana Carroll,et al.  Targeted chromosomal cleavage and mutagenesis in Drosophila using zinc-finger nucleases. , 2002, Genetics.

[40]  D J Segal,et al.  Development of Zinc Finger Domains for Recognition of the 5′-ANN-3′ Family of DNA Sequences and Their Use in the Construction of Artificial Transcription Factors* , 2001, The Journal of Biological Chemistry.

[41]  K. Gardner,et al.  PAS kinase: An evolutionarily conserved PAS domain-regulated serine/threonine kinase , 2001, Proceedings of the National Academy of Sciences of the United States of America.

[42]  S. Strome,et al.  Spindle Dynamics and the Role of γ-Tubulin in Early Caenorhabditis elegans Embryos , 2001 .

[43]  Dana Carroll,et al.  Stimulation of Homologous Recombination through Targeted Cleavage by Chimeric Nucleases , 2001, Molecular and Cellular Biology.

[44]  S Chandrasegaran,et al.  Requirements for double-strand cleavage by chimeric restriction enzymes with zinc finger DNA-recognition domains. , 2000, Nucleic acids research.

[45]  A. Handler,et al.  Insect transgenesis: methods and applications. , 2000 .

[46]  Y. Rong,et al.  Gene targeting by homologous recombination in Drosophila. , 2000, Science.

[47]  S Chandrasegaran,et al.  Hybrid restriction enzymes: zinc finger fusions to Fok I cleavage domain. , 1996, Proceedings of the National Academy of Sciences of the United States of America.

[48]  R. Rothstein 18 – One-Step Gene Disruption in Yeast , 1989 .

[49]  R. Rothstein One-step gene disruption in yeast. , 1983, Methods in enzymology.

[50]  G. Rubin,et al.  Genetic transformation of Drosophila with transposable element vectors. , 1982, Science.

[51]  T. Grace,et al.  Establishment of Four Strains of Cells from Insect Tissues Grown in vitro , 1962, Nature.