Lepidoptera genomes: current knowledge, gaps and future directions.

[1]  Seung‐Won Park,et al.  Genome sequence of the Japanese oak silk moth, Antheraea yamamai: the first draft genome in the family Saturniidae , 2017, GigaScience.

[2]  A. Lemmon,et al.  Resolving Relationships among the Megadiverse Butterflies and Moths with a Novel Pipeline for Anchored Phylogenomics , 2018, Systematic biology.

[3]  N. Grishin,et al.  The first complete genomes of Metalmarks and the classification of butterfly families. , 2017, Genomics.

[4]  H. Kishino,et al.  Genomic adaptation to polyphagy and insecticides in a major East Asian noctuid pest , 2017, Nature Ecology & Evolution.

[5]  Anthony Bretaudeau,et al.  Two genomes of highly polyphagous lepidopteran pests (Spodoptera frugiperda, Noctuidae) with different host-plant ranges , 2017, Scientific Reports.

[6]  Z. Weng,et al.  The genome of Trichoplusia ni, an agricultural pest and novel model for small RNA biology , 2017, bioRxiv.

[7]  M. Friberg,et al.  Rapid Increase in Genome Size as a Consequence of Transposable Element Hyperactivity in Wood-White (Leptidea) Butterflies , 2017, Genome biology and evolution.

[8]  N. Grishin,et al.  Complete Genome of Achalarus lyciades, The First Representative of the Eudaminae Subfamily of Skippers , 2017, Current genomics.

[9]  K. C. Worley,et al.  Genomic innovations, transcriptional plasticity and gene loss underlying the evolution and divergence of two highly polyphagous and invasive Helicoverpa pest species , 2017, BMC Biology.

[10]  Xingrong Ju,et al.  Characterization of transcriptome in the Indian meal moth Plodia interpunctella (Lepidoptera: Pyralidae) and gene expression analysis during developmental stages. , 2017, Gene.

[11]  L. Vasseur,et al.  Segmental duplications: evolution and impact among the current Lepidoptera genomes , 2017, BMC Evolutionary Biology.

[12]  Richard J. Challis,et al.  A high-coverage draft genome of the mycalesine butterfly Bicyclus anynana , 2017, GigaScience.

[13]  R. D. Reed,et al.  A practical guide to CRISPR/Cas9 genome editing in Lepidoptera , 2017, bioRxiv.

[14]  M. P. Cummings,et al.  Phylotranscriptomics resolves ancient divergences in the Lepidoptera , 2017 .

[15]  G. Felton,et al.  Genomics of Lepidoptera saliva reveals function in herbivory. , 2017, Current opinion in insect science.

[16]  Shelley A. Adamo,et al.  The stress response and immune system share, borrow, and reconfigure their physiological network elements: Evidence from the insects , 2017, Hormones and Behavior.

[17]  E. L. Arrese,et al.  Clues on the function of Manduca sexta perilipin 2 inferred from developmental and nutrition-dependent changes in its expression. , 2017, Insect biochemistry and molecular biology.

[18]  P. Beldade,et al.  Developmental and evolutionary mechanisms shaping butterfly eyespots. , 2017, Current opinion in insect science.

[19]  M. P. Cummings,et al.  Phylogeny and Evolution of Lepidoptera. , 2017, Annual review of entomology.

[20]  I. Nookaew,et al.  Viral Phylogenomics Using an Alignment-Free Method: A Three-Step Approach to Determine Optimal Length of k-mer , 2017, Scientific Reports.

[21]  N. Grishin,et al.  Complete genome of Pieris rapae, a resilient alien, a cabbage pest, and a source of anti-cancer proteins , 2016, F1000Research.

[22]  H. Fujiwara,et al.  Functional analysis of genes involved in color pattern formation in Lepidoptera. , 2016, Current opinion in insect science.

[23]  James J. Lewis,et al.  ChIP-Seq-Annotated Heliconius erato Genome Highlights Patterns of cis-Regulatory Evolution in Lepidoptera. , 2016, Cell reports.

[24]  Yang Wang,et al.  Multifaceted biological insights from a draft genome sequence of the tobacco hornworm moth, Manduca sexta. , 2016, Insect biochemistry and molecular biology.

[25]  M. Blaxter,et al.  Lepbase: the Lepidopteran genome database , 2016, bioRxiv.

[26]  Grace C. Wu,et al.  A major gene controls mimicry and crypsis in butterflies and moths , 2016, Nature.

[27]  Yongping Huang,et al.  CRISPR/Cas9‐mediated targeted gene mutagenesis in Spodoptera litura , 2016, Insect science.

[28]  J. Hillyer Insect immunology and hematopoiesis. , 2016, Developmental and comparative immunology.

[29]  N. Grishin,et al.  Complete genomes of Hairstreak butterflies, their speciation, and nucleo-mitochondrial incongruence , 2016, Scientific Reports.

[30]  D. Heckel,et al.  The Genetic Basis of Pheromone Evolution in Moths. , 2016, Annual review of entomology.

[31]  M. Huss,et al.  Evolutionary history of host use, rather than plant phylogeny, determines gene expression in a generalist butterfly , 2016, BMC Evolutionary Biology.

[32]  N. Grishin,et al.  Speciation in Cloudless Sulphurs Gleaned from Complete Genomes , 2016, Genome biology and evolution.

[33]  Simon H. Martin,et al.  Evolutionary Novelty in a Butterfly Wing Pattern through Enhancer Shuffling , 2016, PLoS biology.

[34]  Fei Li,et al.  InsectBase: a resource for insect genomes and transcriptomes , 2015, Nucleic Acids Res..

[35]  J. Mallet,et al.  Major Improvements to the Heliconius melpomene Genome Assembly Used to Confirm 10 Chromosome Fusion Events in 6 Million Years of Butterfly Evolution , 2015, G3: Genes, Genomes, Genetics.

[36]  Evgeny M. Zdobnov,et al.  BUSCO: assessing genome assembly and annotation completeness with single-copy orthologs , 2015, Bioinform..

[37]  Yang Dong,et al.  Outbred genome sequencing and CRISPR/Cas9 gene editing in butterflies , 2015, Nature Communications.

[38]  N. Grishin,et al.  Skipper genome sheds light on unique phenotypic traits and phylogeny , 2015, BMC Genomics.

[39]  M. Groenen,et al.  The Genome of Winter Moth (Operophtera brumata) Provides a Genomic Perspective on Sexual Dimorphism and Phenology , 2015, Genome biology and evolution.

[40]  Anthony R. Ives,et al.  An assembly and alignment-free method of phylogeny reconstruction from next-generation sequencing data , 2015, BMC Genomics.

[41]  Yun-Ru Chen,et al.  The immune signaling pathways of Manduca sexta. , 2015, Insect biochemistry and molecular biology.

[42]  T. Itoh,et al.  A genetic mechanism for female-limited Batesian mimicry in Papilio butterfly , 2015, Nature Genetics.

[43]  Nick V Grishin,et al.  Tiger Swallowtail Genome Reveals Mechanisms for Speciation and Caterpillar Chemical Defense , 2015, Cell reports.

[44]  Gary Moore,et al.  The i5k Workspace@NAL—enabling genomic data access, visualization and curation of arthropod genomes , 2014, Nucleic Acids Res..

[45]  P. Holland,et al.  Ancient Expansion of the Hox Cluster in Lepidoptera Generated Four Homeobox Genes Implicated in Extra-Embryonic Tissue Formation , 2014, PLoS genetics.

[46]  Liisa Holm,et al.  The Glanville fritillary genome retains an ancient karyotype and reveals selective chromosomal fusions in Lepidoptera , 2014, Nature Communications.

[47]  R. Bhatnagar,et al.  A draft genome assembly of the army worm, Spodoptera frugiperda. , 2014, Genomics.

[48]  Fei Li,et al.  ChiloDB: a genomic and transcriptome database for an important rice insect pest Chilo suppressalis , 2014, Database J. Biol. Databases Curation.

[49]  Susan J. Brown,et al.  The i5K Initiative: advancing arthropod genomics for knowledge, human health, agriculture, and the environment. , 2013, The Journal of heredity.

[50]  Cynthia Parr,et al.  A Large-Scale, Higher-Level, Molecular Phylogenetic Study of the Insect Order Lepidoptera (Moths and Butterflies) , 2013, PloS one.

[51]  M. Ragan,et al.  Next-generation phylogenomics , 2013, Biology Direct.

[52]  Jian Wang,et al.  A heterozygous moth genome provides insights into herbivory and detoxification , 2013, Nature Genetics.

[53]  Shuai Zhan,et al.  MonarchBase: the monarch butterfly genome database , 2012, Nucleic Acids Res..

[54]  Simon H. Martin,et al.  Butterfly genome reveals promiscuous exchange of mimicry adaptations among species , 2012, Nature.

[55]  E. V. Nieukerken Order Lepidoptera Linnaeus, 1758. , 2011 .

[56]  N. Wahlberg,et al.  Comprehensive gene and taxon coverage elucidates radiation patterns in moths and butterflies , 2010, Proceedings of the Royal Society B: Biological Sciences.

[57]  Ruiqiang Li,et al.  SilkDB v2.0: a platform for silkworm (Bombyx mori ) genome biology , 2009, Nucleic Acids Res..

[58]  M. P. Cummings,et al.  Evolutionary Framework for Lepidoptera Model Systems , 2009 .

[59]  Kazuei Mita,et al.  The genome of a lepidopteran model insect, the silkworm Bombyx mori. , 2009, Insect biochemistry and molecular biology.

[60]  Dawei Li,et al.  A Draft Sequence for the Genome of the Domesticated Silkworm ( Bombyx mori ) , 2004 .

[61]  Yoshiaki Nagamura,et al.  The genome sequence of silkworm, Bombyx mori. , 2004, DNA research : an international journal for rapid publication of reports on genes and genomes.