Delineation of metabolic gene clusters in plant genomes by chromatin signatures
暂无分享,去创建一个
Paul S. Freemont | Anne Osbourn | Susan J. Rosser | Martin Trick | James T. MacDonald | Hans-Wilhelm Nützmann | A. Osbourn | P. Freemont | M. Trick | Hans-Wilhelm Nützmann | J. T. MacDonald | S. Rosser | Nan Yu | S. V. Kumar | B. Field | Ben Field | Nan Yu | Ben Moore | Souha Berriri | S. Vinod Kumar | B. Moore | Souha Berriri
[1] M. Kolesnikova,et al. An effective strategy for exploring unknown metabolic pathways by genome mining. , 2013, Journal of the American Chemical Society.
[2] M. Freitag,et al. The Fusarium graminearum Histone H3 K27 Methyltransferase KMT6 Regulates Development and Expression of Secondary Metabolite Gene Clusters , 2013, PLoS genetics.
[3] D. Kliebenstein,et al. In Planta Variation of Volatile Biosynthesis: An Alternative Biosynthetic Route to the Formation of the Pathogen-Induced Volatile Homoterpene DMNT via Triterpene Degradation in Arabidopsis Roots , 2015, Plant Cell.
[4] Cole Trapnell,et al. TopHat2: accurate alignment of transcriptomes in the presence of insertions, deletions and gene fusions , 2013, Genome Biology.
[5] Kazunori Okada,et al. Identification of a Biosynthetic Gene Cluster in Rice for Momilactones* , 2007, Journal of Biological Chemistry.
[6] Jean YH Yang,et al. Bioconductor: open software development for computational biology and bioinformatics , 2004, Genome Biology.
[7] D. Duboule,et al. Clustering of mammalian Hox genes with other H3K27me3 targets within an active nuclear domain , 2015, Proceedings of the National Academy of Sciences.
[8] T. Winzer,et al. A Papaver somniferum 10-Gene Cluster for Synthesis of the Anticancer Alkaloid Noscapine , 2012, Science.
[9] Hadi Quesneville,et al. Formation of plant metabolic gene clusters within dynamic chromosomal regions , 2011, Proceedings of the National Academy of Sciences.
[10] Carla S. Jones,et al. Minimum Information about a Biosynthetic Gene cluster. , 2015, Nature chemical biology.
[11] Anne Osbourn,et al. Regulation of metabolic gene clusters in Arabidopsis thaliana , 2014, The New phytologist.
[12] Benjamin Leblanc,et al. Polycomb-Dependent Regulatory Contacts between Distant Hox Loci in Drosophila , 2011, Cell.
[13] C. Topp,et al. Repression of Flowering in Arabidopsis Requires Activation of FLOWERING LOCUS C Expression by the Histone Variant H2A.Z[W][OA] , 2007, The Plant Cell Online.
[14] J. Gershenzon,et al. Genetic evidence for natural product-mediated plant-plant allelopathy in rice (Oryza sativa). , 2012, The New phytologist.
[15] Kazunori Okada,et al. OsTGAP1, a bZIP Transcription Factor, Coordinately Regulates the Inductive Production of Diterpenoid Phytoalexins in Rice* , 2009, The Journal of Biological Chemistry.
[16] Vincent Colot,et al. Arabidopsis TFL2/LHP1 Specifically Associates with Genes Marked by Trimethylation of Histone H3 Lysine 27 , 2007, PLoS genetics.
[17] A. Osbourn,et al. Gene clustering in plant specialized metabolism. , 2014, Current opinion in biotechnology.
[18] R. Amasino,et al. Divergent Roles of a Pair of Homologous Jumonji/Zinc-Finger–Class Transcription Factor Proteins in the Regulation of Arabidopsis Flowering Time , 2004, The Plant Cell Online.
[19] Joana Sequeira-Mendes,et al. The Functional Topography of the Arabidopsis Genome Is Organized in a Reduced Number of Linear Motifs of Chromatin States[C][W] , 2014, Plant Cell.
[20] A. Osbourn,et al. A gene cluster for secondary metabolism in oat: implications for the evolution of metabolic diversity in plants. , 2004, Proceedings of the National Academy of Sciences of the United States of America.
[21] Dana J Morrone,et al. CYP76M7 Is an ent-Cassadiene C11α-Hydroxylase Defining a Second Multifunctional Diterpenoid Biosynthetic Gene Cluster in Rice[W][OA] , 2009, The Plant Cell Online.
[22] C. Dean,et al. Detecting histone modifications in plants. , 2014, Methods in molecular biology.
[23] J. Strauss,et al. The chromatin code of fungal secondary metabolite gene clusters , 2012, Applied Microbiology and Biotechnology.
[24] C. Pál,et al. The evolutionary dynamics of eukaryotic gene order , 2004, Nature Reviews Genetics.
[25] Erik Splinter,et al. Looping and interaction between hypersensitive sites in the active beta-globin locus. , 2002, Molecular cell.
[26] E. Meyerowitz,et al. A Polycomb-group gene regulates homeotic gene expression in Arabidopsis , 1997, Nature.
[27] W. Muir,et al. The CHD3 Remodeler PICKLE Associates with Genes Enriched for Trimethylation of Histone H3 Lysine 271[W][OA] , 2012, Plant Physiology.
[28] A. Osbourn,et al. Metabolic Diversification—Independent Assembly of Operon-Like Gene Clusters in Different Plants , 2008, Science.
[29] A. Aszódi,et al. H3K27me3 forms BLOCs over silent genes and intergenic regions and specifies a histone banding pattern on a mouse autosomal chromosome. , 2009, Genome research.
[30] S. Jacobsen,et al. Epigenetic modifications in plants: an evolutionary perspective. , 2011, Current opinion in plant biology.
[31] L. Daviet,et al. The rise of operon-like gene clusters in plants. , 2014, Trends in plant science.
[32] B. Chadwick,et al. The insulator factor CTCF controls MHC class II gene expression and is required for the formation of long-distance chromatin interactions , 2008, The Journal of experimental medicine.
[33] G. Hong,et al. Nucleic Acids Research , 2015, Nucleic Acids Research.
[34] P. Majumder,et al. Regulation of major histocompatibility complex class II genes. , 2011, Current opinion in immunology.
[35] A. Aharoni,et al. Biosynthesis of Antinutritional Alkaloids in Solanaceous Crops Is Mediated by Clustered Genes , 2013, Science.
[36] Seung Y. Rhee,et al. Genomic Signatures of Specialized Metabolism in Plants , 2014, Science.
[37] David R. Kelley,et al. Differential gene and transcript expression analysis of RNA-seq experiments with TopHat and Cufflinks , 2012, Nature Protocols.
[38] J. A. Jarillo,et al. Mutations in the Arabidopsis SWC6 gene, encoding a component of the SWR1 chromatin remodelling complex, accelerate flowering time and alter leaf and flower development. , 2008, Journal of experimental botany.
[39] Y. Reyes-Domínguez,et al. Chromatin-level regulation of biosynthetic gene clusters. , 2009, Nature chemical biology.
[40] L. Hennig,et al. CHD3 Proteins and Polycomb Group Proteins Antagonistically Determine Cell Identity in Arabidopsis , 2009, PLoS genetics.
[41] Atif Shahab,et al. Whole-genome mapping of histone H3 Lys4 and 27 trimethylations reveals distinct genomic compartments in human embryonic stem cells. , 2007, Cell stem cell.
[42] A. Osbourn,et al. 2012 Landes Bioscience. Do not distribute. Order in the playground Formation of plant gene clusters in dynamic chromosomal regions , 2012 .
[43] A. Osbourn,et al. Compromised disease resistance in saponin-deficient plants. , 1999, Proceedings of the National Academy of Sciences of the United States of America.
[44] Matteo Pellegrini,et al. Whole-Genome Analysis of Histone H3 Lysine 27 Trimethylation in Arabidopsis , 2007, PLoS biology.
[45] Richard Bourgon,et al. Genome-wide analysis of Polycomb targets in Drosophila melanogaster , 2006, Nature Genetics.
[46] J. Reyes,et al. Histone H2A.Z and homologues of components of the SWR1 complex are required to control immunity in Arabidopsis. , 2007, The Plant journal : for cell and molecular biology.
[47] M Frey,et al. Analysis of a chemical plant defense mechanism in grasses. , 1997, Science.
[48] Benjamin M. Bolstad,et al. affy - analysis of Affymetrix GeneChip data at the probe level , 2004, Bioinform..
[49] Kirsten Jørgensen,et al. Genomic clustering of cyanogenic glucoside biosynthetic genes aids their identification in Lotus japonicus and suggests the repeated evolution of this chemical defence pathway. , 2011, The Plant journal : for cell and molecular biology.
[50] T. Jenuwein,et al. Silencing by plant Polycomb‐group genes requires dispersed trimethylation of histone H3 at lysine 27 , 2006, The EMBO journal.
[51] Xiaoquan Qi,et al. Biosynthesis, regulation, and domestication of bitterness in cucumber , 2014, Science.
[52] Rongcheng Lin,et al. The Chromatin-Remodeling Factor PICKLE Integrates Brassinosteroid and Gibberellin Signaling during Skotomorphogenic Growth in Arabidopsis[C][W] , 2014, Plant Cell.
[53] A. Osbourn,et al. Modularity of Plant Metabolic Gene Clusters: A Trio of Linked Genes That Are Collectively Required for Acylation of Triterpenes in Oat[W][OA] , 2013, Plant Cell.
[54] J. Rougemont,et al. The Dynamic Architecture of Hox Gene Clusters , 2011, Science.
[55] J. Tena,et al. An evolutionarily conserved three-dimensional structure in the vertebrate Irx clusters facilitates enhancer sharing and coregulation. , 2011, Nature communications.
[56] Nathan M. Springer,et al. Genomic Distribution of Maize Facultative Heterochromatin Marked by Trimethylation of H3K27[W] , 2013, Plant Cell.
[57] Reuben J. Peters,et al. Identification of Syn-Pimara-7,15-Diene Synthase Reveals Functional Clustering of Terpene Synthases Involved in Rice Phytoalexin/Allelochemical Biosynthesis1 , 2004, Plant Physiology.