Probabilistic discovery of overlapping cellular processes and their regulation
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[1] A. Vershon,et al. Interactions of the Mcm1 MADS Box Protein with Cofactors That Regulate Mating in Yeast , 2002, Molecular and Cellular Biology.
[2] Åke Björck,et al. Numerical Methods , 1995, Handbook of Marine Craft Hydrodynamics and Motion Control.
[3] D. Botstein,et al. Genomic expression programs in the response of yeast cells to environmental changes. , 2000, Molecular biology of the cell.
[4] Uri Lerner,et al. Inference in Hybrid Networks: Theoretical Limits and Practical Algorithms , 2001, UAI.
[5] Ben Taskar,et al. Rich probabilistic models for gene expression , 2001, ISMB.
[6] Xin Chen,et al. The TRANSFAC system on gene expression regulation , 2001, Nucleic Acids Res..
[7] David Heckerman,et al. Parameter Priors for Directed Acyclic Graphical Models and the Characteriration of Several Probability Distributions , 1999, UAI.
[8] T. Kunoh,et al. Positive regulation of transcription of homeoprotein-encoding YHP1 by the two-component regulator Sln1 in Saccharomyces cerevisiae. , 2000, Biochemical and biophysical research communications.
[9] D. Botstein,et al. Singular value decomposition for genome-wide expression data processing and modeling. , 2000, Proceedings of the National Academy of Sciences of the United States of America.
[10] Roded Sharan,et al. Discovering statistically significant biclusters in gene expression data , 2002, ISMB.
[11] Judea Pearl,et al. Probabilistic reasoning in intelligent systems - networks of plausible inference , 1991, Morgan Kaufmann series in representation and reasoning.
[12] Nir Friedman,et al. From promoter sequence to expression: a probabilistic framework , 2002, RECOMB '02.
[13] Hiroyuki Ogata,et al. KEGG: Kyoto Encyclopedia of Genes and Genomes , 1999, Nucleic Acids Res..
[14] Nicola J. Rinaldi,et al. Transcriptional Regulatory Networks in Saccharomyces cerevisiae , 2002, Science.
[15] Yudong D. He,et al. Functional Discovery via a Compendium of Expression Profiles , 2000, Cell.
[16] Leo Breiman,et al. Classification and Regression Trees , 1984 .
[17] D. Botstein,et al. Genomic expression responses to DNA-damaging agents and the regulatory role of the yeast ATR homolog Mec1p. , 2001, Molecular biology of the cell.
[18] Nir Friedman,et al. The Bayesian Structural EM Algorithm , 1998, UAI.
[19] N. Friedman,et al. 大規模データセットからのBayesianネットワーク構造の学習:「Sparse Candidate」アルゴリズム , 1999 .
[20] Yaniv Ziv,et al. Revealing modular organization in the yeast transcriptional network , 2002, Nature Genetics.
[21] L. Lazzeroni. Plaid models for gene expression data , 2000 .
[22] L. Johnston,et al. Rme1, which controls CLN2 expression in Saccharomyces cerevisiae, is a nuclear protein that is cell cycle regulated , 2001, Molecular Genetics and Genomics.
[23] Judea Pearl,et al. Probabilistic reasoning in intelligent systems , 1988 .
[24] D. Rubin,et al. Maximum likelihood from incomplete data via the EM - algorithm plus discussions on the paper , 1977 .
[25] J. Navarro-Pedreño. Numerical Methods for Least Squares Problems , 1996 .
[26] George M. Church,et al. Biclustering of Expression Data , 2000, ISMB.
[27] Nir Friedman,et al. Learning Module Networks , 2002, J. Mach. Learn. Res..
[28] Avi Pfeffer,et al. Probabilistic Frame-Based Systems , 1998, AAAI/IAAI.
[29] D. Pe’er,et al. Module networks: identifying regulatory modules and their condition-specific regulators from gene expression data , 2003, Nature Genetics.
[30] Michael Ruogu Zhang,et al. Comprehensive identification of cell cycle-regulated genes of the yeast Saccharomyces cerevisiae by microarray hybridization. , 1998, Molecular biology of the cell.
[31] Nir Friedman,et al. Inferring subnetworks from perturbed expression profiles , 2001, ISMB.
[32] T. Kunoh,et al. YHP1 encodes a new homeoprotein that binds to the IME1 promoter in Saccharomyces cerevisiae , 2000, Yeast.
[33] M. Ashburner,et al. Gene Ontology: tool for the unification of biology , 2000, Nature Genetics.
[34] D. Botstein,et al. Cluster analysis and display of genome-wide expression patterns. , 1998, Proceedings of the National Academy of Sciences of the United States of America.