High Dynamic Range Fluorescence Imaging

Fluorescence acquisition and image display over a high dynamic range is highly desirable. However, the limited dynamic range of current photodetectors and imaging charge-coupled devices impose a limit on the fluorescence intensities that can be simultaneously captured during a single image acquisition. This is particularly troublesome when imaging biological samples, where protein expression fluctuates considerably. As a result, biological images will often contain regions with signal that is either saturated or hidden within background noise, causing information loss. In this paper, we summarize recent work from our group and others, to extended conventional to high dynamic range fluorescence imaging. These strategies have many biological applications, such as mapping of neural connections, vascular imaging, bio-distribution studies or pharmacologic imaging at the single cell and organ level.

[1]  R. Weissleder,et al.  Fluorescence anisotropy imaging in drug discovery. , 2018, Advanced drug delivery reviews.

[2]  Karl Deisseroth,et al.  Whole-tissue biopsy phenotyping of three-dimensional tumours reveals patterns of cancer heterogeneity , 2017, Nature Biomedical Engineering.

[3]  Timothy D. Weber,et al.  Neuronal imaging with ultrahigh dynamic range multiphoton microscopy , 2017, Scientific Reports.

[4]  Zhifang Li,et al.  High-dynamic-range fluorescence laminar optical tomography (HDR-FLOT). , 2017, Biomedical optics express.

[5]  Ralph Weissleder,et al.  Heterogeneity of macrophage infiltration and therapeutic response in lung carcinoma revealed by 3D organ imaging , 2017, Nature Communications.

[6]  Qingming Luo,et al.  High-dynamic-range fluorescence molecular tomography for imaging of fluorescent targets with large concentration differences. , 2016, Optics express.

[7]  Wilfried Uhring,et al.  High-dynamic-range microscope imaging based on exposure bracketing in full-field optical coherence tomography. , 2016, Optics letters.

[8]  C. Vinegoni,et al.  Real-time high dynamic range laser scanning microscopy , 2016, Nature Communications.

[9]  Karel Svoboda,et al.  A platform for brain-wide imaging and reconstruction of individual neurons , 2016, eLife.

[10]  Jinxiao Pan,et al.  High-Dynamic-Range CT Reconstruction Based on Varying Tube-Voltage Imaging , 2015, PloS one.

[11]  M. Long,et al.  Use of high dynamic range imaging for quantitative combustion diagnostics. , 2015, Applied optics.

[12]  N. Renier,et al.  iDISCO: A Simple, Rapid Method to Immunolabel Large Tissue Samples for Volume Imaging , 2014, Cell.

[13]  J. Girkin,et al.  Quantitative high dynamic range beam profiling for fluorescence microscopy. , 2014, The Review of scientific instruments.

[14]  Ralph Weissleder,et al.  Sequential average segmented microscopy for high signal-to-noise ratio motion-artifact-free in vivo heart imaging. , 2013, Biomedical optics express.

[15]  Dong Kyun Lim,et al.  A Novel Method of Determining Parameters of CLAHE Based on Image Entropy , 2013 .

[16]  Abbas Cheddad,et al.  Improving signal detection in emission optical projection tomography via single source multi-exposure image fusion. , 2013, Optics express.

[17]  Ralph Weissleder,et al.  Improved intravital microscopy via synchronization of respiration and holder stabilization , 2012, Journal of biomedical optics.

[18]  Xu Wang,et al.  High dynamic range optical projection tomography (HDR-OPT). , 2012, Optics express.

[19]  K. Patel,et al.  High dynamic range photography for intraoperative imaging: how we do it. , 2011, Archives of facial plastic surgery.

[20]  Jerome Mertz,et al.  Practical implementation of log-scale active illumination microscopy , 2010, Biomedical optics express.

[21]  Michael S. Brown,et al.  Globally Optimized Linear Windowed Tone Mapping , 2010, IEEE Transactions on Visualization and Computer Graphics.

[22]  Erik Reinhard,et al.  High Dynamic Range Imaging: Acquisition, Display, and Image-Based Lighting , 2010 .

[23]  R. Weissleder,et al.  Imaging of molecular probe activity with Born-normalized fluorescence optical projection tomography. , 2010, Optics letters.

[24]  Marius Tico,et al.  Artifact-free High Dynamic Range imaging , 2009, 2009 IEEE International Conference on Computational Photography (ICCP).

[25]  Vasilis Ntziachristos,et al.  Normalized Born ratio for fluorescence optical projection tomography. , 2009, Optics letters.

[26]  Jerome Mertz,et al.  Enhanced weak-signal sensitivity in two-photon microscopy by adaptive illumination. , 2007, Optics letters.

[27]  Mark Dewhirst,et al.  Three-dimensional imaging of whole rodent organs using optical computed and emission tomography. , 2007, Journal of biomedical optics.

[28]  J. Sharpe,et al.  Visualizing Plant Development and Gene Expression in Three Dimensions Using Optical Projection Tomography[W] , 2006, The Plant Cell Online.

[29]  Vasilis Ntziachristos,et al.  Shedding light onto live molecular targets , 2003, Nature Medicine.

[30]  J. Vane,et al.  Optical Projection Tomography as a Tool for 3D Microscopy and Gene Expression Studies , 2002 .

[31]  R. Weissleder,et al.  Experimental three-dimensional fluorescence reconstruction of diffuse media by use of a normalized Born approximation. , 2001, Optics letters.

[32]  Jitendra Malik,et al.  Recovering high dynamic range radiance maps from photographs , 1997, SIGGRAPH.