Prediction by a Neural Network of Outer Membrane P-strand Protein Topology
暂无分享,去创建一个
K. Diederichs | J. Breed | K. Zeth | J. Freigang | J. Freigang | S. Umhau | Stephan Umhau | J. Freigang
[1] U. Henning,et al. Cell envelope and shape of Escherichia coli: multiple mutants missing the outer membrane lipoprotein and other major outer membrane proteins , 1978, Journal of bacteriology.
[2] U. Henning,et al. Primary structure of major outer membrane protein II (ompA protein) of Escherichia coli K-12. , 1980, Proceedings of the National Academy of Sciences of the United States of America.
[3] R. Morona,et al. Escherichia coli K-12 outer membrane protein (OmpA) as a bacteriophage receptor: analysis of mutant genes expressing altered proteins , 1984, Journal of bacteriology.
[4] R. Morona,et al. Bacteriophage receptor area of outer membrane protein OmpA of Escherichia coli K-12 , 1985, Journal of bacteriology.
[5] J. Rosenbusch,et al. Folding patterns of porin and bacteriorhodopsin. , 1985, The EMBO journal.
[6] J. Deisenhofer,et al. Structure of the protein subunits in the photosynthetic reaction centre of Rhodopseudomonas viridis at 3Å resolution , 1985, Nature.
[7] Geoffrey E. Hinton,et al. Learning representations by back-propagating errors , 1986, Nature.
[8] U. Henning,et al. Cell surface exposure of the outer membrane protein OmpA of Escherichia coli K-12. , 1986, Journal of molecular biology.
[9] F. Jähnig,et al. Models for the structure of outer-membrane proteins of Escherichia coli derived from raman spectroscopy and prediction methods. , 1986, Journal of molecular biology.
[10] J. Tommassen. Biogenesis and Membrane Topology of Outer Membrane Proteins in Escherichia Coli , 1988 .
[11] T. Sejnowski,et al. Predicting the secondary structure of globular proteins using neural network models. , 1988, Journal of molecular biology.
[12] M. Karplus,et al. Protein secondary structure prediction with a neural network. , 1989, Proceedings of the National Academy of Sciences of the United States of America.
[13] R. Freudl. Insertion of peptides into cell-surface-exposed areas of the Escherichia coli OmpA protein does not interfere with export and membrane assembly. , 1989, Gene.
[14] R Langridge,et al. Improvements in protein secondary structure prediction by an enhanced neural network. , 1990, Journal of molecular biology.
[15] P. Klebba,et al. Surface topology of the Escherichia coli K-12 ferric enterobactin receptor , 1990, Journal of bacteriology.
[16] F. Jähnig,et al. Structure predictions of membrane proteins are not that bad. , 1990, Trends in biochemical sciences.
[17] G. Schulz,et al. Prediction of the general structure of OmpF and PhoE from the sequence and structure of porin from Rhodobacter capsulatus. Orientation of porin in the membrane. , 1991, Biochimica et biophysica acta.
[18] Jonathan D. Hirst,et al. Prediction of ATP-binding motifs: a comparison of a perceptron-type neural network and a consensus sequence method , 1991 .
[19] B Efron,et al. Statistical Data Analysis in the Computer Age , 1991, Science.
[20] L. van Alphen,et al. Antigenic sites on porin of Haemophilus influenzae type b: mapping with synthetic peptides and evaluation of structure predictions , 1992, Journal of bacteriology.
[21] S H Kim,et al. Predicting protein secondary structure content. A tandem neural network approach. , 1992, Journal of molecular biology.
[22] W. Baumeister,et al. Topology of the anion-selective porin Omp32 from Comamonas acidovorans. , 1992, Journal of structural biology.
[23] C. Richardson,et al. Monoclonal antibodies specific to porin of Haemophilus influenzae type b: localization of their cognate epitopes and tests of their biological activities , 1992, Molecular microbiology.
[24] V. Braun,et al. Insertion derivatives containing segments of up to 16 amino acids identify surface- and periplasm-exposed regions of the FhuA outer membrane receptor of Escherichia coli K-12 , 1993, Journal of bacteriology.
[25] Scott R. Presnell,et al. Artificial neural networks for pattern recognition in biochemical sequences. , 1993, Annual review of biophysics and biomolecular structure.
[26] H. Umeyama,et al. Protein modelling using a chimera reference protein derived from exons. , 1993, Protein engineering.
[27] S. Cowan,et al. Prediction of membrane‐spanning β‐strands and its application to maltoporin , 1993, Protein science : a publication of the Protein Society.
[28] S H Kim,et al. Prediction of protein folding class from amino acid composition , 1993, Proteins.
[29] Gebhard F. X. Schertler,et al. Projection structure of rhodopsin , 1993, Nature.
[30] J. Liu,et al. A site-directed spin-labeling study of ligand-induced conformational change in the ferric enterobactin receptor, FepA. , 1994, Biochemistry.
[31] J. Coulton,et al. Genetic insertion and exposure of a reporter epitope in the ferrichrome-iron receptor of Escherichia coli K-12 , 1994, Journal of bacteriology.
[32] B. Rost,et al. Combining evolutionary information and neural networks to predict protein secondary structure , 1994, Proteins.
[33] B. Rost,et al. Conservation and prediction of solvent accessibility in protein families , 1994, Proteins.
[34] J. Rosenbusch,et al. Folding pattern diversity of integral membrane proteins. , 1994, Science.
[35] C Geourjon,et al. SOPM: a self-optimized method for protein secondary structure prediction. , 1994, Protein engineering.
[36] G. Hobom,et al. OmpA-FMDV VP1 fusion proteins: production, cell surface exposure and immune responses to the major antigenic domain of foot-and-mouth disease virus. , 1994, Vaccine.
[37] R. Koebnik,et al. Membrane assembly of circularly permuted variants of the E. coli outer membrane protein OmpA. , 1995, Journal of molecular biology.
[38] K. Diederichs. Structural superposition of proteins with unknown alignment and detection of topological similarity using a six‐dimensional search algorithm , 1995, Proteins.
[39] B. Rost,et al. Transmembrane helices predicted at 95% accuracy , 1995, Protein science : a publication of the Protein Society.
[40] J. Coulton,et al. Topological analysis of the Escherichia coli ferrichrome-iron receptor by using monoclonal antibodies , 1995, Journal of bacteriology.
[41] A Kolinski,et al. Neural network system for the evaluation of side-chain packing in protein structures. , 1995, Protein engineering.
[42] R. Koebnik. In vivo membrane assembly of split variants of the E.coli outer membrane protein OmpA. , 1996, The EMBO journal.
[43] J. Mendenhall,et al. Display of β-lactamase on the Escherichia coli surface: outer membrane phenotypes conferred by Lpp′–OmpA′–β-lactamase fusions , 1996 .
[44] C. Stathopoulos. An alternative topological model for Escherichia coli OmpA , 1996, Protein science : a publication of the Protein Society.
[45] J M Chandonia,et al. The importance of larger data sets for protein secondary structure prediction with neural networks , 1996, Protein science : a publication of the Protein Society.
[46] H. Michel,et al. Cytochrome c oxidase. , 1996, Current opinion in structural biology.
[47] M. A. Payne,et al. Double mutagenesis of a positive charge cluster in the ligand-binding site of the ferric enterobactin receptor, FepA. , 1997, Proceedings of the National Academy of Sciences of the United States of America.
[48] P K Ponnuswamy,et al. Identification of membrane spanning beta strands in bacterial porins. , 1997, Protein engineering.
[49] Gebhard F. X. Schertler,et al. Arrangement of rhodopsin transmembrane α-helices , 1997, Nature.
[50] K. Diederichs,et al. Porins of Haemophilus influenzae Type b Mutated in Loop 3 and in Loop 4* , 1997, The Journal of Biological Chemistry.
[51] David C. Jones,et al. Progress in protein structure prediction. , 1997, Current opinion in structural biology.
[52] S. Yoshikawa,et al. Beef heart cytochrome c oxidase. , 1997, Current Opinion in Structural Biology.
[53] A. Wittinghofer,et al. Dynamic and equilibrium studies on the interaction of Ran with its effector, RanBP1. , 1997, Biochemistry.
[54] M. Ehrmann,et al. TnTIN and TnTAP: mini-transposons for site-specific proteolysis in vivo. , 1997, Proceedings of the National Academy of Sciences of the United States of America.
[55] K. Diederichs,et al. The structure of porin from Paracoccus denitrificans at 3.1 Å resolution , 1997, FEBS letters.
[56] J. Feix,et al. Mapping of the residues involved in a proposed beta-strand located in the ferric enterobactin receptor FepA using site-directed spin-labeling. , 1997, Biochemistry.
[57] K. Diederichs,et al. An internal affinity‐tag for purification and crystallization of the siderophore receptor fhua, integral outer membrane protein from escherichia coli K‐12 , 1998, Protein science : a publication of the Protein Society.