Start-specific transcription in yeast.

At the G1 to S transition of the budding yeast cell cycle there is burst of transcription of at least 30 different genes. This may in part be due to the fact that Saccheromyes cerevisiae often exists as a colonial micro-organism which spends most of its time in stationary phase (G0). When cells have the opportunity to enter the mitotic cell cycle, there is a selective advantage for cells that can start dividing rapidly and efficiently. Thus it is not surprising that they resynthesize enzymes critical for high-fidelity replication of DNA and replace other components that may not have survived extended G0 arrest. Proteins that are responsible for starting the cell cycle, particularly those that would disrupt the cycle if they were produced at other stages of the cell cycle, are transcribed specifically at the G1/S transition. Most of the G1 cyclins are expressed specifically at this time, and their activity determines the timing of the G1/S transition (Richardson et al. 1989; Nash et al. 1988; Cross 1988).

[1]  S. Reed,et al.  Cyclin-B homologs in Saccharomyces cerevisiae function in S phase and in G2. , 1992, Genes & development.

[2]  R. Conaway,et al.  Transcription : mechanisms and regulation , 1994 .

[3]  K. Tanaka,et al.  res2+, a new member of the cdc10+/SWI4 family, controls the ‘start’ of mitotic and meiotic cycles in fission yeast. , 1994, EMBO Journal.

[4]  Jianguo Wu,et al.  StuA is required for cell pattern formation in Aspergillus. , 1992, Genes & development.

[5]  L. Breeden,et al.  Cell cycle-specific expression of the SWI4 transcription factor is required for the cell cycle regulation of HO transcription. , 1991, Genes & development.

[6]  D. Beach,et al.  Sct1 functions in partnership with Cdc10 in a transcription complex that activates cell cycle START and inhibits differentiation , 1993, Cell.

[7]  I. Verma,et al.  Direct association of pp40/I kappa B beta with rel/NF-kappa B transcription factors: role of ankyrin repeats in the inhibition of DNA binding activity. , 1992, Proceedings of the National Academy of Sciences of the United States of America.

[8]  J. Decaprio,et al.  The Schizosaccharomyces pombe MBF complex requires heterodimerization for entry into S phase , 1995, Molecular and cellular biology.

[9]  L. Dirick,et al.  SW16 is a regulatory subunit of two different cell cycle START-dependent transcription factors in Saccharomyces cerevisiae , 1992, Journal of Cell Science.

[10]  K. Tanaka,et al.  A new cdc gene required for S phase entry of Schizosaccharomyces pombe encodes a protein similar to the cdc 10+ and SWI4 gene products. , 1992, The EMBO journal.

[11]  M. Tyers,et al.  The PCL2 (ORFD)-PHO85 cyclin-dependent kinase complex: a cell cycle regulator in yeast. , 1994, Science.

[12]  L. Breeden,et al.  Three independent forms of regulation affect expression of HO, CLN1 and CLN2 during the cell cycle of Saccharomyces cerevisiae. , 1994, Genetics.

[13]  T. Baker,et al.  Complete transposition requires four active monomers in the mu transposase tetramer. , 1994, Genes & development.

[14]  K. Nasmyth,et al.  A role for the transcription factors Mbp1 and Swi4 in progression from G1 to S phase. , 1993, Science.

[15]  S. McKnight,et al.  The leucine zipper: a hypothetical structure common to a new class of DNA binding proteins. , 1988, Science.

[16]  L. Breeden,et al.  Similarity between cell-cycle genes of budding yeast and fission yeast and the Notch gene of Drosophila , 1987, Nature.

[17]  Kim Nasmyth,et al.  The role of SWI4 and SWI6 in the activity of G1 cyclins in yeast , 1991, Cell.

[18]  P. Bork Hundreds of ankyrin‐like repeats in functionally diverse proteins: Mobile modules that cross phyla horizontally? , 1993, Proteins.

[19]  L. Hartwell Sequential function of gene products relative to DNA synthesis in the yeast cell cycle. , 1976, Journal of molecular biology.

[20]  Tony Hunter,et al.  The regulation of transcription by phosphorylation , 1992, Cell.

[21]  Kim Nasmyth,et al.  A repetitive DNA sequence that confers cell-cycle START (CDC28)-dependent transcription of the HO gene in yeast , 1985, Cell.

[22]  I. Herskowitz,et al.  Cell cycle control by a complex of the cyclin HCS26 (PCL1) and the kinase PHO85. , 1994, Science.

[23]  David Lydall,et al.  The identification of a second cell cycle control on the HO promoter in yeast: Cell cycle regulation of SWI5 nuclear entry , 1990, Cell.

[24]  K. Nasmyth Molecular analysis of a cell lineage , 1983, Nature.

[25]  C. Gordon,et al.  A cell cycle-responsive transcriptional control element and a negative control element in the gene encoding DNA polymerase alpha in Saccharomyces cerevisiae. , 1991, Proceedings of the National Academy of Sciences of the United States of America.

[26]  L. Moore,et al.  Interaction of the yeast Swi4 and Swi6 cell cycle regulatory proteins in vitro. , 1992, Proceedings of the National Academy of Sciences of the United States of America.

[27]  L. Johnston,et al.  The CDC8 transcript is cell cycle regulated in yeast and is expressed coordinately with CDC9 and CDC21 at a point preceding histone transcription. , 1987, Experimental cell research.

[28]  D. Heimbrook,et al.  Cloning and characterization of E2F-2, a novel protein with the biochemical properties of transcription factor E2F , 1993, Molecular and cellular biology.

[29]  S. Elledge,et al.  The SAD1/RAD53 protein kinase controls multiple checkpoints and DNA damage-induced transcription in yeast. , 1994, Genes & development.

[30]  L. Breeden,et al.  SWI6 protein is required for transcription of the periodically expressed DNA synthesis genes in budding yeast , 1992, Nature.

[31]  L. Hartwell,et al.  Mitotic checkpoint genes in budding yeast and the dependence of mitosis on DNA replication and repair. , 1994, Genes & development.

[32]  L. Johnson,et al.  Mutational analysis supports a structural model for the cell cycle protein kinase p34. , 1994, Protein engineering.

[33]  G. Tokiwa,et al.  The WHI1+ gene of Saccharomyces cerevisiae tethers cell division to cell size and is a cyclin homolog. , 1988, The EMBO journal.

[34]  L. Johnston,et al.  Control of DNA synthesis genes in fission yeast by the cell-cycle gene cdclO + , 1992, Nature.

[35]  M. Sipiczki 12 – Taxonomy and Phylogenesis , 1989 .

[36]  J. Hoeijmakers,et al.  The MO15 cell cycle kinase is associated with the TFIIH transcription-DNA repair factor , 1994, Cell.

[37]  I. Herskowitz,et al.  Asymmetry and directionality in production of new cell types during clonal growth: the switching pattern of homothallic yeast , 1979, Cell.

[38]  F. Cross,et al.  A potential positive feedback loop controlling CLN1 and CLN2 gene expression at the start of the yeast cell cycle , 1991, Cell.

[39]  M. Mendenhall,et al.  An inhibitor of p34CDC28 protein kinase activity from Saccharomyces cerevisiae. , 1993, Science.

[40]  P. Farnham,et al.  The HIP1 binding site is required for growth regulation of the dihydrofolate reductase gene promoter , 1992, Molecular and cellular biology.

[41]  B. Garvik,et al.  A new gene affecting the efficiency of mating-type interconversions in homothallic strains of Saccharomyces cerevisiae. , 1977, Genetics.

[42]  L. Breeden,et al.  Regulation of the yeast HO gene. , 1985, Cold Spring Harbor symposia on quantitative biology.

[43]  Curt Wittenberg,et al.  G1-specific cyclins of S. cerevisiae: Cell cycle periodicity, regulation by mating pheromone, and association with the p34 CDC28 protein kinase , 1990, Cell.

[44]  S. Forsburg,et al.  The fission yeast cdc18 + gene product couples S phase to START and mitosis , 1993, Cell.

[45]  Brenda J. Andrews,et al.  Transcriptional activation of CLN1, CLN2, and a putative new G1 cyclin (HCS26) by SWI4, a positive regulator of G1-specific transcription , 1991, Cell.

[46]  P. Nurse,et al.  Characterization of the fission yeast cdc10+ protein that is required for commitment to the cell cycle. , 1989, Journal of cell science.

[47]  F. Cross,et al.  DAF1, a mutant gene affecting size control, pheromone arrest, and cell cycle kinetics of Saccharomyces cerevisiae , 1988, Molecular and cellular biology.

[48]  A. Reymond,et al.  Cytoskeletal and DNA structure abnormalities result from bypass of requirement for the cdc10 start gene in the fission yeast Schizosaccharomyces pombe. , 1992, Journal of cell science.

[49]  K. Nasmyth At least 1400 base pairs of 5′-flanking DNA is required for the correct expression of the HO gene in yeast , 1985, Cell.

[50]  L. Johnston,et al.  Cell cycle control of DNA synthesis in budding yeast. , 1992, Nucleic acids research.

[51]  Christopher A. Jones,et al.  Dual regulation of the yeast CDC28-p40 protein kinase complex: Cell cycle, pheromone, and nutrient limitation effects , 1987, Cell.

[52]  E. O’Shea,et al.  Phosphorylation of the transcription factor PHO4 by a cyclin-CDK complex, PHO80-PHO85. , 1994, Science.

[53]  L. Johnston,et al.  P40SDB25, a putative CDK inhibitor, has a role in the M/G1 transition in Saccharomyces cerevisiae. , 1994, Genes & development.

[54]  M. Ward,et al.  Suppression of a yeast cyclic AMP-dependent protein kinase defect by overexpression of SOK1, a yeast gene exhibiting sequence similarity to a developmentally regulated mouse gene , 1994, Molecular and cellular biology.

[55]  P. Nurse,et al.  Gene required in G1 for commitment to cell cycle and in G2 for control of mitosis in fission yeast , 1981, Nature.

[56]  G. Fink,et al.  Induction of pseudohyphal growth by overexpression of PHD1, a Saccharomyces cerevisiae gene related to transcriptional regulators of fungal development , 1994, Molecular and cellular biology.

[57]  N. L. Thangue,et al.  DRTF1/E2F: an expanding family of heterodimeric transcription factors implicated in cell-cycle control. , 1994 .

[58]  K Nasmyth,et al.  Characterization of four B-type cyclin genes of the budding yeast Saccharomyces cerevisiae. , 1992, Molecular biology of the cell.

[59]  Kim Nasmyth,et al.  A central role for SWI6 in modulating cell cycle Start-specific transcription in yeast , 1992, Nature.

[60]  L. Breeden,et al.  Multiple SWI6-dependent cis-acting elements control SWI4 transcription through the cell cycle , 1993, Molecular and cellular biology.

[61]  Daniel J. Lew,et al.  A cyclin B homolog in S. cerevisiae: Chronic activation of the Cdc28 protein kinase by cyclin prevents exit from mitosis , 1991, Cell.

[62]  Kim Nasmyth,et al.  Positive feedback in the activation of Gl cyclins in yeast , 1991, Nature.

[63]  J. Strathern,et al.  A site-specific endonuclease essential for mating-type switching in Saccharomyces cerevisiae , 1983, Cell.

[64]  A. Reymond,et al.  The activity of S.pombe DSC‐1‐like factor is cell cycle regulated and dependent on the activity of p34cdc2. , 1993, EMBO Journal.

[65]  D. Beach,et al.  cdt1 is an essential target of the Cdc10/Sct1 transcription factor: requirement for DNA replication and inhibition of mitosis. , 1994, The EMBO journal.

[66]  D. Livingston,et al.  The retinoblastoma-susceptibility gene product becomes phosphorylated in multiple stages during cell cycle entry and progression. , 1992, Proceedings of the National Academy of Sciences of the United States of America.

[67]  Mike Tyers,et al.  Mechanisms that help the yeast cell cycle clock tick: G2 cyclins transcriptionally activate G2 cyclins and repress G1 cyclins , 1993, Cell.

[68]  L. Johnston,et al.  Coordination of expression of DNA synthesis genes in budding yeast by a cell-cycle regulated trans factor , 1991, Nature.

[69]  H. Okayama,et al.  A B‐type cyclin negatively regulates conjugation via interacting with cell cycle ‘start’ genes in fission yeast. , 1994, The EMBO journal.

[70]  C. Zhou,et al.  Mutation analysis of Saccharomyces cerevisiae CDC6 promoter: defining its UAS domain and cell cycle regulating element. , 1993, DNA and cell biology.

[71]  R. Kornberg,et al.  Relationship of CDK-activating kinase and RNA polymerase II CTD kinase TFIIH/TFIIK , 1994, Cell.

[72]  F. Cross,et al.  CLB5: a novel B cyclin from budding yeast with a role in S phase. , 1992, Genes & development.

[73]  S. Aves,et al.  Cloning, sequencing and transcriptional control of the Schizosaccharomyces pombe cdc10 ‘start’ gene. , 1985, The EMBO journal.

[74]  Brenda J. Andrews,et al.  The yeast SWI4 protein contains a motif present in developmental regulators and is part of a complex involved in cell-cycle-dependent transcription , 1989, Nature.

[75]  G. Faye,et al.  The kin28 protein kinase is associated with a cyclin in Saccharomyces cerevisiae. , 1993, Journal of molecular biology.

[76]  Curt Wittenberg,et al.  An essential G1 function for cyclin-like proteins in yeast , 1989, Cell.

[77]  L. Johnston,et al.  DNA synthesis control in yeast: An evolutionarily conserved mechanism for regulating DNA synthesis genes? , 1992, BioEssays : news and reviews in molecular, cellular and developmental biology.

[78]  W. Lee,et al.  Molecular cloning of cellular genes encoding retinoblastoma-associated proteins: identification of a gene with properties of the transcription factor E2F , 1992, Molecular and cellular biology.

[79]  Kim Nasmyth,et al.  The B-type cyclin kinase inhibitor p40 SIC1 controls the G1 to S transition in S. cerevisiae , 1994, Cell.

[80]  S. Moreno,et al.  Substrates for p34 cdc2 : In vivo veritas? , 1990, Cell.

[81]  C. Wittenberg,et al.  Cell cycle-dependent transcription of CLN2 is conferred by multiple distinct cis-acting regulatory elements , 1994, Molecular and cellular biology.

[82]  M. Vidal,et al.  The retinoblastoma protein binds to a family of E2F transcription factors , 1993, Molecular and cellular biology.

[83]  H. Xiao,et al.  SPK1 is an essential S-phase-specific gene of Saccharomyces cerevisiae that encodes a nuclear serine/threonine/tyrosine kinase , 1993, Molecular and cellular biology.

[84]  L. Moore,et al.  Mutational analysis of a DNA sequence involved in linking gene expression to the cell cycle. , 1992, Biochemistry and cell biology = Biochimie et biologie cellulaire.

[85]  B. Futcher,et al.  Comparison of the Saccharomyces cerevisiae G1 cyclins: Cln3 may be an upstream activator of Cln1, Cln2 and other cyclins. , 1993, The EMBO journal.

[86]  G. Faye,et al.  KIN28, a yeast split gene coding for a putative protein kinase homologous to CDC28. , 1986, The EMBO journal.

[87]  A structural similarity between mammalian and yeast transcription factors for cell-cycle-regulated genes. , 1993, Trends in cell biology.

[88]  A. Nasim,et al.  Molecular biology of the fission yeast , 1989 .

[89]  I. Herskowitz,et al.  Direct inhibition of the yeast cyclin-dependent kinase Cdc28-Cln by Far1. , 1994, Science.

[90]  K. Nasmyth,et al.  pct1+, which encodes a new DNA-binding partner of p85cdc10, is required for meiosis in the fission yeast Schizosaccharomyces pombe. , 1994, Genes & development.

[91]  I. Herskowitz,et al.  Identification of a DNA binding factor involved in cell-cycle control of the yeast HO gene , 1989, Cell.

[92]  K. Nasmyth,et al.  Changes in a SWI4,6-DNA-binding complex occur at the time of HO gene activation in yeast. , 1991, Genes & development.

[93]  L. Hartwell,et al.  Regulation of mating in the cell cycle of Saccharomyces cerevisiae , 1977, The Journal of cell biology.

[94]  K Nasmyth,et al.  CLB5 and CLB6, a new pair of B cyclins involved in DNA replication in Saccharomyces cerevisiae. , 1993, Genes & development.

[95]  Michael Primig,et al.  Anatomy of a transcription factor important for the Start of the cell cycle in Saccharomyces cerevisiae , 1992, Nature.

[96]  J. Labbé,et al.  The MO15 gene encodes the catalytic subunit of a protein kinase that activates cdc2 and other cyclin‐dependent kinases (CDKs) through phosphorylation of Thr161 and its homologues. , 1993, The EMBO journal.

[97]  Kim Nasmyth,et al.  Cell cycle control of the yeast HO gene: Cis- and Trans-acting regulators , 1987, Cell.

[98]  P. Russell,et al.  Dual functions of CDC6: a yeast protein required for DNA replication also inhibits nuclear division. , 1992, The EMBO journal.

[99]  S. Reed,et al.  Direct induction of G1-specific transcripts following reactivation of the Cdc28 kinase in the absence of de novo protein synthesis. , 1992, Genes & development.

[100]  S. McKnight,et al.  Identification of Ets- and notch-related subunits in GA binding protein. , 1991, Science.

[101]  L. Breeden,et al.  Analysis of the SWI4/SWI6 protein complex, which directs G1/S-specific transcription in Saccharomyces cerevisiae , 1993, Molecular and cellular biology.

[102]  J. Nevins,et al.  The interaction of RB with E2F coincides with an inhibition of the transcriptional activity of E2F. , 1992, Genes & development.

[103]  K. Yamashita,et al.  The cdc2‐related protein p40MO15 is the catalytic subunit of a protein kinase that can activate p33cdk2 and p34cdc2. , 1993 .