Engineered fumarate sensing Escherichia coli based on novel chimeric two-component system.

DcuS/DcuR two component system (TCS) was firstly employed for the expression of the gfp gene under the dcuB gene promoter in aerobic condition to develop high throughput screening system able to screen microorganisms producing high amount of fumarate. However, the DcuS/DcuR TCS could not produce a signal strong enough to mediate the expression of the gfp gene responding fumarate concentration. Thus, DcuS/DucR TCS was engineered by recruiting the EnvZ/OmpR system, the most-studied TCS in E. coli. A chimeric DcuS/EnvZ (DcuSZ) TCS was constructed by fusing the sensor histidine kinase of DcuS with the cytoplasmic catalytic domain of EnvZ, in which the expression of the gfp gene or the ompC gene was mediated by the ompC gene promoter through the cognate response regulator, OmpR. The output signals produced by the chimeric DcuSZ TCS were enough to detect fumarate concentration quantatively, in which the expressions of the gfp gene and the ompC gene were proportional to the fumarate concentration in the medium. Moreover, principal component analysis of C4-dicarboxylates showed that DcuSZ chimera was highly specific to fumarate but could also respond to other C4-dicarboxylates, which strongly suggests that TCS-based high throughput screening system able to screen microorganisms producing target chemicals can be developed.

[1]  J. Cronan,et al.  Tricarboxylic Acid Cycle and Glyoxylate Bypass. , 2005, EcoSal Plus.

[2]  M. Inouye,et al.  Activation of bacterial porin gene expression by a chimeric signal transducer in response to aspartate. , 1989, Science.

[3]  Ann M Stock,et al.  Histidine kinases and response regulator proteins in two-component signaling systems. , 2001, Trends in biochemical sciences.

[4]  M. Inouye,et al.  Signal transduction via the histidyl‐aspartyl phosphorelay , 1997, Genes to cells : devoted to molecular & cellular mechanisms.

[5]  T. Mizuno,et al.  Evidence for the physiological importance of the phosphotransfer between the two regulatory components, EnvZ and OmpR, in osmoregulation in Escherichia coli. , 1989, The Journal of biological chemistry.

[6]  Saïd Jabbouri,et al.  Comparison of two standardisation methods in real-time quantitative RT-PCR to follow Staphylococcus aureus genes expression during in vitro growth. , 2004, Journal of microbiological methods.

[7]  Albert Siryaporn,et al.  Cross‐talk suppression between the CpxA–CpxR and EnvZ–OmpR two‐component systems in E. coli , 2008, Molecular microbiology.

[8]  M. Manson,et al.  Chimeric Chemoreceptors in Escherichia coli: Signaling Properties of Tar-Tap and Tap-Tar Hybrids , 1998, Journal of bacteriology.

[9]  G. Unden,et al.  Fumarate Regulation of Gene Expression in Escherichia coli by the DcuSR (dcuSR Genes) Two-Component Regulatory System , 1998, Journal of bacteriology.

[10]  Michael Y. Galperin,et al.  A census of membrane-bound and intracellular signal transduction proteins in bacteria: Bacterial IQ, extroverts and introverts , 2005, BMC Microbiology.

[11]  A. Straathof,et al.  Fumaric acid production by fermentation , 2008, Applied Microbiology and Biotechnology.

[12]  S. Forst,et al.  Signal transduction by the EnvZ-OmpR phosphotransfer system in bacteria. , 1994, Research in microbiology.

[13]  Andreas Möglich,et al.  Structure and signaling mechanism of Per-ARNT-Sim domains. , 2009, Structure.

[14]  V. Dötsch,et al.  A new structural domain in the Escherichia coli RcsC hybrid sensor kinase connects histidine kinase and phosphoreceiver domains. , 2006, Journal of molecular biology.

[15]  Ann M Stock,et al.  Two-component signal transduction. , 2000, Annual review of biochemistry.

[16]  Gregory A. Bakken,et al.  Computational methods for the analysis of chemical sensor array data from volatile analytes. , 2000, Chemical reviews.

[17]  S. Hong,et al.  Fermentative production of chemicals that can be used for polymer synthesis. , 2003, Macromolecular bioscience.

[18]  J. Liao,et al.  Design of artificial cell-cell communication using gene and metabolic networks. , 2004, Proceedings of the National Academy of Sciences of the United States of America.

[19]  J. Guest,et al.  Transcriptional Regulation and Organization of thedcuA and dcuB Genes, Encoding Homologous Anaerobic C4-Dicarboxylate Transporters inEscherichia coli , 1998 .

[20]  R. Blumenthal,et al.  The leucine-responsive regulatory protein of Escherichia coli negatively regulates transcription of ompC and micF and positively regulates translation of ompF , 1995, Journal of bacteriology.

[21]  N. W. Davis,et al.  The complete genome sequence of Escherichia coli K-12. , 1997, Science.

[22]  J. Guest,et al.  Identification and Characterization of a Two-Component Sensor-Kinase and Response-Regulator System (DcuS-DcuR) Controlling Gene Expression in Response to C4-Dicarboxylates in Escherichia coli , 1999, Journal of bacteriology.

[23]  H. Hellinga,et al.  Identification of cognate ligands for the Escherichia coli phnD protein product and engineering of a reagentless fluorescent biosensor for phosphonates , 2006, Protein science : a publication of the Protein Society.

[24]  M. Inouye,et al.  Phosphorylation of OmpR by the osmosensor EnvZ modulates expression of the ompF and ompC genes in Escherichia coli. , 1989, Proceedings of the National Academy of Sciences of the United States of America.

[25]  S. Okabe,et al.  Escherichia coli Harboring a Natural IncF Conjugative F Plasmid Develops Complex Mature Biofilms by Stimulating Synthesis of Colanic Acid and Curli , 2008, Journal of bacteriology.

[26]  M. Inouye,et al.  Localization and membrane topology of EnvZ, a protein involved in osmoregulation of OmpF and OmpC in Escherichia coli. , 1987, The Journal of biological chemistry.

[27]  T. Mizuno,et al.  Molecular analysis of mutant ompR genes exhibiting different phenotypes as to osmoregulation of the ompF and ompC genes of Escherichia coli , 1986, Molecular and General Genetics MGG.

[28]  J. S. Parkinson Signal transduction schemes of bacteria , 1993, Cell.

[29]  G. Unden,et al.  C4-Dicarboxylate Degradation in Aerobic and Anaerobic Growth , 2004, EcoSal Plus.

[30]  R. Langer,et al.  The formation of propylene fumarate oligomers for use in bioerodible bone cement composites , 1990 .

[31]  J. Leveau,et al.  Improved gfp and inaZ broad-host-range promoter-probe vectors. , 2000, Molecular plant-microbe interactions : MPMI.

[32]  M. Inouye,et al.  Histidine kinases: diversity of domain organization , 1999, Molecular microbiology.

[33]  Igor B. Zhulin,et al.  Four-helix bundle: a ubiquitous sensory module in prokaryotic signal transduction , 2005, Bioinform..

[34]  J. Djonlagic,et al.  Synthesis and rheological study of some maleic acid and fumaric acid stereoregular polyesters , 1992 .

[35]  T. Mizuno,et al.  Phosphorylation of a bacterial activator protein, OmpR, by a protein kinase, EnvZ, stimulates the transcription of the ompF and ompC genes in Escherichia coli , 1990, FEBS letters.

[36]  J. Guest,et al.  Inactivation and Regulation of the Aerobic C4-Dicarboxylate Transport (dctA) Gene ofEscherichia coli , 1999, Journal of bacteriology.

[37]  J. Liao,et al.  A synthetic gene–metabolic oscillator , 2005, Nature.

[38]  T. Silhavy,et al.  EnvZ, a transmembrane environmental sensor of Escherichia coli K-12, is phosphorylated in vitro , 1988, Journal of bacteriology.

[39]  Sun-Gu Lee,et al.  Importance of expression system in the production of unnatural recombinant proteins in Escherichia coli , 2009 .