Tissue specific long non-coding RNAs are involved in aroma formation of black tea
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N. Singh | T. Mondal | H. Rawal | Himanshu Dubey | B. Bera | D. Varshney | P. M. Kumar | T. Bandyopadhyay | Deepti Varshney | P. Kumar
[1] Guanglin Li,et al. Genome-wide identification and functional analysis of circRNAs in Zea mays , 2018, bioRxiv.
[2] Genome-wide identification and characterization of novel lncRNAs in Ginkgo biloba , 2018, Trees.
[3] Caiyun He,et al. Transcriptomic and functional analyses unveil the role of long non-coding RNAs in anthocyanin biosynthesis during sea buckthorn fruit ripening , 2018, DNA research : an international journal for rapid publication of reports on genes and genomes.
[4] J. Bennetzen,et al. Draft genome sequence of Camellia sinensis var. sinensis provides insights into the evolution of the tea genome and tea quality , 2018, Proceedings of the National Academy of Sciences.
[5] Robert D. Finn,et al. Rfam 13.0: shifting to a genome-centric resource for non-coding RNA families , 2017, Nucleic Acids Res..
[6] T. Sharma,et al. Discovery of microRNA-target modules of African rice (Oryza glaberrima) under salinity stress , 2018, Scientific Reports.
[7] D. Nigam,et al. High Quality Unigenes and Microsatellite Markers from Tissue Specific Transcriptome and Development of a Database in Clusterbean (Cyamopsis tetragonoloba, L. Taub) , 2017, Genes.
[8] Chaoling Wei,et al. Genome-wide identification of microRNAs responsive to Ectropis oblique feeding in tea plant (Camellia sinensis L.) , 2017, Scientific Reports.
[9] M. E. Pè,et al. Long noncoding RNAs in the model species Brachypodium distachyon , 2017, Scientific Reports.
[10] P. Singh,et al. Identification of long non-coding RNA in rice lines resistant to Rice blast pathogen Maganaporthe oryzae , 2017, Bioinformation.
[11] Chaoling Wei,et al. Absolute quantification of microRNAs in green tea (Camellia sinensis) by stem-loop quantitative real-time PCR. , 2017, Journal of the science of food and agriculture.
[12] Li Wang,et al. Identification and characterization of novel lncRNAs in Arabidopsis thaliana. , 2017, Biochemical and biophysical research communications.
[13] Shivi Tyagi,et al. Survey of High Throughput RNA-Seq Data Reveals Potential Roles for lncRNAs during Development and Stress Response in Bread Wheat , 2017, Front. Plant Sci..
[14] En-Hua Xia,et al. The Tea Tree Genome Provides Insights into Tea Flavor and Independent Evolution of Caffeine Biosynthesis. , 2017, Molecular plant.
[15] T. Mondal,et al. Cultivation, Improvement, and Environmental Impacts of Tea , 2017 .
[16] Jinke Lin,et al. Combined small RNA and degradome sequencing reveals complex microRNA regulation of catechin biosynthesis in tea (Camellia sinensis) , 2017, PloS one.
[17] K. Lindblad-Toh,et al. FEELnc: a tool for long non-coding RNA annotation and its application to the dog transcriptome , 2017, Nucleic acids research.
[18] Jiangxin Wang,et al. Genome-wide long non-coding RNA screening, identification and characterization in a model microorganism Chlamydomonas reinhardtii , 2016, Scientific Reports.
[19] Mukesh Jain,et al. Genome-wide analysis of long intergenic non-coding RNAs in chickpea and their potential role in flower development , 2016, Scientific Reports.
[20] Swati Megha,et al. Genome Wide Identification and Functional Prediction of Long Non-Coding RNAs Responsive to Sclerotinia sclerotiorum Infection in Brassica napus , 2016, PloS one.
[21] Fariza Tahi,et al. miRNAFold: a web server for fast miRNA precursor prediction in genomes , 2016, Nucleic Acids Res..
[22] Min Chen,et al. Genome-wide identification and characterization of novel lncRNAs in Populus under nitrogen deficiency , 2016, Molecular Genetics and Genomics.
[23] Jian Zhang,et al. Construction and analysis of cardiac hypertrophy-associated lncRNA-mRNA network based on competitive endogenous RNA reveal functional lncRNAs in cardiac hypertrophy , 2016, Oncotarget.
[24] Cai-rui Lu,et al. Transcriptome analysis reveals long noncoding RNAs involved in fiber development in cotton (Gossypium arboreum) , 2016, Science China Life Sciences.
[25] M. Szcześniak,et al. CANTATAdb: A Collection of Plant Long Non-Coding RNAs , 2015, Plant & cell physiology.
[26] Andreu Paytuví Gallart,et al. GREENC: a Wiki-based database of plant lncRNAs , 2015, Nucleic Acids Res..
[27] P. Chand,et al. Biotechnological advances in tea (Camellia sinensis [L.] O. Kuntze): a review , 2015, Plant Cell Reports.
[28] Guanglin Li,et al. Genome-wide identification and functional analysis of lincRNAs acting as miRNA targets or decoys in maize , 2015, BMC Genomics.
[29] J. A. Chekanova,et al. Long non-coding RNAs and their functions in plants. , 2015, Current opinion in plant biology.
[30] R. Shiekhattar,et al. The many faces of long noncoding RNAs , 2015, The FEBS journal.
[31] He Zhang,et al. Genome sequence of cultivated Upland cotton (Gossypium hirsutum TM-1) provides insights into genome evolution , 2015, Nature Biotechnology.
[32] Xue Liu,et al. Long Non-coding RNAs and Their Biological Roles in Plants , 2015, Genom. Proteom. Bioinform..
[33] P. Ahuja,et al. Histochemical evaluation of catechins in PEG stressed transgenic tea plants using catechin-specific-diazotized sulfanilamide reagent , 2015, Biotechnic & histochemistry : official publication of the Biological Stain Commission.
[34] Zhen Su,et al. PNRD: a plant non-coding RNA database , 2014, Nucleic Acids Res..
[35] Ronny Lorenz,et al. The ViennaRNA web services. , 2015, Methods in molecular biology.
[36] L. Qu,et al. Genome-wide screening and functional analysis identify a large number of long noncoding RNAs involved in the sexual reproduction of rice , 2014, Genome Biology.
[37] W. Chao,et al. Identification and Evaluation of Reliable Reference Genes for Quantitative Real-Time PCR Analysis in Tea Plant (Camellia sinensis (L.) O. Kuntze) , 2014, International journal of molecular sciences.
[38] Mingle Wang,et al. Identification and characterization of cold-responsive microRNAs in tea plant (Camellia sinensis) and their targets using high-throughput sequencing and degradome analysis , 2014, BMC Plant Biology.
[39] W. Terzaghi,et al. Arabidopsis noncoding RNA mediates control of photomorphogenesis by red light , 2014, Proceedings of the National Academy of Sciences.
[40] Chang Liu,et al. Genome-Wide Identification and Characterization of Long Intergenic Non-Coding RNAs in Ganoderma lucidum , 2014, PloS one.
[41] Qingli Guo,et al. Identification of Maize Long Non-Coding RNAs Responsive to Drought Stress , 2014, PloS one.
[42] T. Sharma,et al. Genome-wide Analysis of Zinc Transporter Genes of Maize (Zea mays) , 2014, Plant Molecular Biology Reporter.
[43] Steven R. Eichten,et al. Genome-wide discovery and characterization of maize long non-coding RNAs , 2014, Genome Biology.
[44] Quan-wu Zhu,et al. Identification of miRNAs and their targets in tea (Camellia sinensis) , 2013, Journal of Zhejiang University SCIENCE B.
[45] Sean R. Eddy,et al. Infernal 1.1: 100-fold faster RNA homology searches , 2013, Bioinform..
[46] Colin N. Dewey,et al. De novo transcript sequence reconstruction from RNA-seq using the Trinity platform for reference generation and analysis , 2013, Nature Protocols.
[47] M. Axtell. Classification and comparison of small RNAs from plants. , 2013, Annual review of plant biology.
[48] Jeannie T. Lee,et al. Long Noncoding RNAs: Past, Present, and Future , 2013, Genetics.
[49] Meng Wang,et al. Widespread Long Noncoding RNAs as Endogenous Target Mimics for MicroRNAs in Plants1[W] , 2013, Plant Physiology.
[50] J. Kocher,et al. CPAT: Coding-Potential Assessment Tool using an alignment-free logistic regression model , 2013, Nucleic acids research.
[51] N. Chua,et al. Genome-Wide Analysis Uncovers Regulation of Long Intergenic Noncoding RNAs in Arabidopsis[C][W] , 2012, Plant Cell.
[52] Meng Wang,et al. PsRobot: a web-based plant small RNA meta-analysis toolbox , 2012, Nucleic Acids Res..
[53] Qian-Hao Zhu,et al. Molecular Functions of Long Non-Coding RNAs in Plants , 2012, Genes.
[54] Howard Y. Chang,et al. Molecular mechanisms of long noncoding RNAs. , 2011, Molecular cell.
[55] Patrick Xuechun Zhao,et al. psRNATarget: a plant small RNA target analysis server , 2011, Nucleic Acids Res..
[56] T. Mondal,et al. Computational Identification of Conserved microRNAs and Their Targets in Tea (Camellia sinensis) , 2010 .
[57] G. R. Prabu,et al. Computational Identification of miRNAs and Their Target Genes from Expressed Sequence Tags of Tea (Camellia sinensis) , 2010, Genom. Proteom. Bioinform..
[58] Cole Trapnell,et al. Transcript assembly and quantification by RNA-Seq reveals unannotated transcripts and isoform switching during cell differentiation. , 2010, Nature biotechnology.
[59] Mark D. Robinson,et al. edgeR: a Bioconductor package for differential expression analysis of digital gene expression data , 2009, Bioinform..
[60] C. Wahlestedt,et al. Regulatory roles of natural antisense transcripts , 2009, Nature Reviews Molecular Cell Biology.
[61] D. Spector,et al. Long noncoding RNAs: functional surprises from the RNA world. , 2009, Genes & development.
[62] Lior Pachter,et al. Sequence Analysis , 2020, Definitions.
[63] Thomas D. Schmittgen,et al. Analyzing real-time PCR data by the comparative CT method , 2008, Nature Protocols.
[64] Stefan Götz,et al. Blast2GO: A Comprehensive Suite for Functional Analysis in Plant Genomics , 2007, International journal of plant genomics.
[65] M. Todesco,et al. Target mimicry provides a new mechanism for regulation of microRNA activity , 2007, Nature Genetics.
[66] Yong Zhang,et al. CPC: assess the protein-coding potential of transcripts using sequence features and support vector machine , 2007, Nucleic Acids Res..
[67] P. Schieberle,et al. Characterization of the key aroma compounds in the beverage prepared from Darjeeling black tea: quantitative differences between tea leaves and infusion. , 2006, Journal of agricultural and food chemistry.
[68] Thomas L. Madden,et al. BLAST: at the core of a powerful and diverse set of sequence analysis tools , 2004, Nucleic Acids Res..
[69] Susumu Goto,et al. The KEGG databases at GenomeNet , 2002, Nucleic Acids Res..
[70] Susumu Goto,et al. KEGG: Kyoto Encyclopedia of Genes and Genomes , 2000, Nucleic Acids Res..
[71] Hiroyuki Ogata,et al. KEGG: Kyoto Encyclopedia of Genes and Genomes , 1999, Nucleic Acids Res..
[72] P. Briffeuil,et al. Match-Box_server: a multiple sequence alignment tool placing emphasis on reliability , 1997, Comput. Appl. Biosci..
[73] S. Eddy,et al. tRNAscan-SE: a program for improved detection of transfer RNA genes in genomic sequence. , 1997, Nucleic acids research.
[74] W. Wight. Nomenclature and Classification of the Tea Plant , 1959, Nature.