Toward accurate solvation dynamics of lanthanides and actinides in water using polarizable force fields: from gas-phase energetics to hydration free energies
暂无分享,去创建一个
Nohad Gresh | Jean-Philip Piquemal | Pengyu Ren | Carine Clavaguéra | Christophe Gourlaouen | Pengyu Y. Ren | N. Gresh | J. Piquemal | J. Dognon | Johnny C. Wu | Aude Marjolin | Jean Pierre Dognon | C. Gourlaouen | C. Clavaguéra | Aude Marjolin | Jean‐Philip Piquemal
[1] D. Guillaumont,et al. Solving the hydration structure of the heaviest actinide aqua ion known: the californium(III) case. , 2010, Angewandte Chemie.
[2] D. Hagberg,et al. Hydration of lanthanide chloride salts: a quantum chemical and classical molecular dynamics simulation study. , 2010, The journal of physical chemistry. B.
[3] T. Darden,et al. Towards a force field based on density fitting. , 2006, The Journal of chemical physics.
[4] Thomas A. Halgren,et al. The representation of van der Waals (vdW) interactions in molecular mechanics force fields: potential form, combination rules, and vdW parameters , 1992 .
[5] Lester R. Morss,et al. The chemistry of the actinide and transactinide elements , 2006 .
[6] G. Chillemi,et al. Revised ionic radii of lanthanoid(III) ions in aqueous solution. , 2011, Inorganic chemistry.
[7] P. Vitorge,et al. Polarizable interaction potential for molecular dynamics simulations of actinoids(III) in liquid water. , 2011, The Journal of chemical physics.
[8] D. York,et al. Multi-scale quantum models for biocatalysis : modern techniques and applications , 2009 .
[9] J. Dognon,et al. Molecular dynamics study of the hydration of lanthanum(III) and europium(III) including many-body effects. , 2005, The journal of physical chemistry. B.
[10] Nohad Gresh,et al. Toward a Separate Reproduction of the Contributions to the Hartree-Fock and DFT Intermolecular Interaction Energies by Polarizable Molecular Mechanics with the SIBFA Potential. , 2007, Journal of chemical theory and computation.
[11] P. Vitorge,et al. Building a polarizable pair interaction potential for lanthanoids(III) in liquid water: a molecular dynamics study of structure and dynamics of the whole series. , 2009, The Journal of chemical physics.
[12] Nohad Gresh,et al. Improved Formulas for the Calculation of the Electrostatic Contribution to the Intermolecular Interaction Energy from Multipolar Expansion of the Electronic Distribution. , 2003, The journal of physical chemistry. A.
[13] David Beeman,et al. Some Multistep Methods for Use in Molecular Dynamics Calculations , 1976 .
[14] Nohad Gresh,et al. Inclusion of the ligand field contribution in a polarizable molecular mechanics: SIBFA‐LF , 2003, J. Comput. Chem..
[15] T. Darden,et al. A smooth particle mesh Ewald method , 1995 .
[16] B. Schimmelpfennig,et al. Quantum chemical and molecular dynamics study of the coordination of Th(IV) in aqueous solvent. , 2010, The journal of physical chemistry. B.
[17] B. Hess,et al. Dynamics and structure of Ln(III)-aqua ions: a comparative molecular dynamics study using ab initio based flexible and polarizable model potentials. , 2009, The journal of physical chemistry. B.
[18] Pengyu Y. Ren,et al. Towards accurate solvation dynamics of divalent cations in water using the polarizable amoeba force field: From energetics to structure. , 2006, The Journal of chemical physics.
[19] L. Helm,et al. Inorganic and bioinorganic solvent exchange mechanisms. , 2005, Chemical reviews.
[20] S. Durell,et al. Specificity of acyl transfer from 2-mercaptobenzamide thioesters to the HIV-1 nucleocapsid protein. , 2007, Journal of the American Chemical Society.
[21] P. Claverie,et al. The exact multicenter multipolar part of a molecular charge distribution and its simplified representations , 1988 .
[22] J. Dognon,et al. In silico prediction of atomic static electric-dipole polarizabilities of the early tetravalent actinide ions : Th4+ (5f0), Pa4+ (5f1), and U4+ (5f2) , 2008 .
[23] I. Bányai,et al. The Rates and Mechanisms of Water Exchange of Actinide Aqua Ions: A Variable Temperature17O NMR Study of U(H2O)104+, UF(H2O)93+, and Th(H2O)104+ , 2000 .
[24] Yizhak Marcus,et al. A simple empirical model describing the thermodynamics of hydration of ions of widely varying charges, sizes, and shapes , 1994 .
[25] Pengyu Y. Ren,et al. Polarizable Atomic Multipole Water Model for Molecular Mechanics Simulation , 2003 .
[26] J. Dognon,et al. Modeling of uranyl cation-water clusters , 2003 .
[27] Jean-Philip Piquemal,et al. Electron Pair Localization Function (EPLF) for Density Functional Theory and ab Initio Wave Function-Based Methods: A New Tool for Chemical Interpretation. , 2011, Journal of chemical theory and computation.
[28] O Engkvist,et al. Accurate Intermolecular Potentials Obtained from Molecular Wave Functions: Bridging the Gap between Quantum Chemistry and Molecular Simulations. , 2000, Chemical reviews.
[29] W. J. Stevens,et al. Transferability of molecular distributed polarizabilities from a simple localized orbital based method , 1989 .
[30] K. Raymond,et al. From antenna to assay: lessons learned in lanthanide luminescence. , 2009, Accounts of chemical research.
[31] B. Thole. Molecular polarizabilities calculated with a modified dipole interaction , 1981 .
[32] P. Burns,et al. Structure of the Homoleptic Thorium(IV) Aqua Ion [Th(H2O)10]Br4. , 2007, Angewandte Chemie.
[33] Laura Gagliardi,et al. A quantum chemical and molecular dynamics study of the coordination of Cm(III) in water. , 2007, Journal of the American Chemical Society.
[34] Kazuo Kitaura,et al. A new energy decomposition scheme for molecular interactions within the Hartree‐Fock approximation , 1976 .
[35] Alan Grossfield,et al. Simulation of Ca2+ and Mg2+ solvation using polarizable atomic multipole potential. , 2006, The journal of physical chemistry. B.
[36] C. Madic,et al. Actinide Separation Science and Technology , 2010 .
[37] Z. Hou,et al. Recent developments in organolanthanide polymerization catalysts , 2002 .
[38] Hoover,et al. Canonical dynamics: Equilibrium phase-space distributions. , 1985, Physical review. A, General physics.
[39] Nicholas J Long,et al. Lanthanides in magnetic resonance imaging. , 2006, Chemical Society reviews.
[40] B. Roos,et al. The coordination of uranyl in water: a combined quantum chemical and molecular simulation study. , 2005, Journal of the American Chemical Society.
[41] F. Calvo,et al. Theoretical study of the hydrated Gd3+ ion: structure, dynamics, and charge transfer. , 2006, The Journal of chemical physics.
[42] N. Gresh,et al. Role of Cation Polarization in holo- and hemi-Directed [Pb(H2O)n](2+) Complexes and Development of a Pb(2+) Polarizable Force Field. , 2011, Journal of chemical theory and computation.
[43] Nohad Gresh,et al. Representation of Zn(II) complexes in polarizable molecular mechanics. Further refinements of the electrostatic and short‐range contributions. Comparisons with parallel ab initio computations , 2005, J. Comput. Chem..
[44] B. Hartke,et al. Photodissociation dynamics of H2S on new coupled ab initio potential energy surfaces , 1999 .
[45] P. Vitorge,et al. A dynamic model to explain hydration behaviour along the lanthanide series. , 2008, Chemphyschem : a European journal of chemical physics and physical chemistry.
[46] Mark S. Gordon,et al. General atomic and molecular electronic structure system , 1993, J. Comput. Chem..
[47] T. Kowall,et al. MOLECULAR DYNAMICS SIMULATION STUDY OF LANTHANIDE IONS LN3+ IN AQUEOUS SOLUTION INCLUDING WATER POLARIZATION. CHANGE IN COORDINATION NUMBER FROM 9 TO 8 ALONG THE SERIES , 1995 .
[48] F. Calvo,et al. Gd(III) polyaminocarboxylate chelate: realistic many-body molecular dynamics simulations for molecular imaging applications. , 2006, The journal of physical chemistry. B.
[49] H. Berendsen,et al. Molecular dynamics with coupling to an external bath , 1984 .
[50] Pengyu Y. Ren,et al. Ion solvation thermodynamics from simulation with a polarizable force field. , 2003, Journal of the American Chemical Society.
[51] D. Lundberg,et al. Hydration and hydrolysis of thorium(IV) in aqueous solution and the structures of two crystalline thorium(IV) hydrates. , 2009, Inorganic chemistry.
[52] S. Nosé. A unified formulation of the constant temperature molecular dynamics methods , 1984 .
[53] Éva Tóth,et al. The Chemistry of Contrast Agents in Medical Magnetic Resonance Imaging , 2013 .
[54] T. H. Dunning. Gaussian basis sets for use in correlated molecular calculations. I. The atoms boron through neon and hydrogen , 1989 .
[55] Nohad Gresh,et al. Anisotropic, Polarizable Molecular Mechanics Studies of Inter- and Intramolecular Interactions and Ligand-Macromolecule Complexes. A Bottom-Up Strategy. , 2007, Journal of chemical theory and computation.
[56] Klaus Hermann,et al. On the nature of the bonding of lone pair ligands to a transition metal , 1984 .
[57] William H. Fink,et al. Frozen fragment reduced variational space analysis of hydrogen bonding interactions. Application to the water dimer , 1987 .
[58] F. David,et al. Thermodynamic properties of some tri- and tetravalent actinide aquo ions , 2003 .
[59] Nohad Gresh,et al. Binding of 5‐phospho‐D‐arabinonohydroxamate and 5‐phospho‐D‐arabinonate inhibitors to zinc phosphomannose isomerase from Candida albicans studied by polarizable molecular mechanics and quantum mechanics , 2007, J. Comput. Chem..
[60] W. S. Benedict,et al. Rotation‐Vibration Spectra of Deuterated Water Vapor , 1956 .
[61] Charles H. Bennett,et al. Efficient estimation of free energy differences from Monte Carlo data , 1976 .
[62] Jean-Philip Piquemal,et al. A CSOV study of the difference between HF and DFT intermolecular interaction energy values: The importance of the charge transfer contribution , 2005, J. Comput. Chem..
[63] Jean-Philip Piquemal,et al. Polarizable molecular dynamics simulation of Zn(II) in water using the AMOEBA force field. , 2010, Journal of Chemical Theory and Computation.
[64] Yue Shi,et al. Multipole electrostatics in hydration free energy calculations , 2011, J. Comput. Chem..