A proteogenomic approach to map the proteome of an unsequenced pathogen – Leishmania donovani
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Nandini A. Sahasrabuddhe | Dhanashree S. Kelkar | Shivakumar Keerthikumar | A. Pandey | R. Chaerkady | Babylakshmi Muthusamy | S. Renuse | Jyoti Sharma | K. Kandasamy | G. S. S. Kumar | A. Venugopal | H. Harsha | Harsh Pawar | N. R. Sekhar | Harshal N Nemade | Sweta Khobragade | M. Patole
[1] Nandini A. Sahasrabuddhe,et al. A proteogenomic analysis of Anopheles gambiae using high-resolution Fourier transform mass spectrometry. , 2011, Genome research.
[2] Dhanashree S. Kelkar,et al. Proteogenomic Analysis of Mycobacterium tuberculosis By High Resolution Mass Spectrometry* , 2011, Molecular & Cellular Proteomics.
[3] Sven Nahnsen,et al. Mass spectrometry at the interface of proteomics and genomics. , 2011, Molecular bioSystems.
[4] C. Craik,et al. The Oligopeptidase B of Leishmania Regulates Parasite Enolase and Immune Evasion* , 2010, The Journal of Biological Chemistry.
[5] V. Bafna,et al. Proteogenomics to discover the full coding content of genomes: a computational perspective. , 2010, Journal of proteomics.
[6] Shyam Sundar,et al. Proteome mapping of overexpressed membrane-enriched and cytosolic proteins in sodium antimony gluconate (SAG) resistant clinical isolate of Leishmania donovani. , 2010, British journal of clinical pharmacology.
[7] R. Sommer,et al. Proteogenomics of Pristionchus pacificus reveals distinct proteome structure of nematode models. , 2010, Genome research.
[8] C. Shaha,et al. Leishmania cell surface prohibitin: role in host–parasite interaction , 2010, Cellular microbiology.
[9] T. Le Bihan,et al. Gel free analysis of the proteome of intracellular Leishmania mexicana. , 2010, Molecular and biochemical parasitology.
[10] Gustavo A. de Souza,et al. MSMSpdbb: providing protein databases of closely related organisms to improve proteomic characterization of prokaryotic microbes , 2010, Bioinform..
[11] H. Maltezou,et al. Drug Resistance in Visceral Leishmaniasis , 2009, Journal of biomedicine & biotechnology.
[12] A. Jackson. The Evolution of Amastin Surface Glycoproteins in Trypanosomatid Parasites , 2009, Molecular biology and evolution.
[13] Ashutosh Kumar,et al. Characterization of dipeptidylcarboxypeptidase of Leishmania donovani: a molecular model for structure based design of antileishmanials , 2010, J. Comput. Aided Mol. Des..
[14] J. Alvar,et al. Developments in the treatment of visceral leishmaniasis , 2009, Expert opinion on emerging drugs.
[15] A. Ivens,et al. Comparative Expression Profiling of Leishmania: Modulation in Gene Expression between Species and in Different Host Genetic Backgrounds , 2009, PLoS neglected tropical diseases.
[16] Kimmen Sjölander,et al. Berkeley PHOG: PhyloFacts orthology group prediction web server , 2009, Nucleic Acids Res..
[17] F. Raymond,et al. Whole-genome comparative RNA expression profiling of axenic and intracellular amastigote forms of Leishmania infantum. , 2009, Molecular and biochemical parasitology.
[18] J. Dujardin. Structure, dynamics and function of Leishmania genome: resolving the puzzle of infection, genetics and evolution? , 2009, Infection, genetics and evolution : journal of molecular epidemiology and evolutionary genetics in infectious diseases.
[19] Damian Fermin,et al. Identification of novel alternative splice isoforms of circulating proteins in a mouse model of human pancreatic cancer. , 2009, Cancer research.
[20] Samuel H. Payne,et al. Discovery and revision of Arabidopsis genes by proteogenomics , 2008, Proceedings of the National Academy of Sciences.
[21] V. Brinkmann,et al. Transgenic, Fluorescent Leishmania mexicana Allow Direct Analysis of the Proteome of Intracellular Amastigotes*S , 2008, Molecular & Cellular Proteomics.
[22] John R Yates,et al. The proteome of Toxoplasma gondii: integration with the genome provides novel insights into gene expression and annotation , 2008, Genome Biology.
[23] Daniel B. Goodman,et al. Comparative proteogenomics: combining mass spectrometry and comparative genomics to analyze multiple genomes. , 2008, Genome research.
[24] Jacques Corbeil,et al. Genome-wide gene expression profiling analysis of Leishmania major and Leishmania infantum developmental stages reveals substantial differences between the two species , 2008, BMC Genomics.
[25] P. Zimmermann,et al. Genome-Scale Proteomics Reveals Arabidopsis thaliana Gene Models and Proteome Dynamics , 2008, Science.
[26] C. Shaha,et al. Crucial role of cytosolic tryparedoxin peroxidase in Leishmania donovani survival, drug response and virulence , 2008, Molecular microbiology.
[27] E. Suzuki,et al. Trypanosomatid and fungal glycolipids and sphingolipids as infectivity factors and potential targets for development of new therapeutic strategies. , 2008, Biochimica et biophysica acta.
[28] S. K. Choudhuri,et al. Inhibition of ABC Transporters Abolishes Antimony Resistance in Leishmania Infection , 2007, Antimicrobial Agents and Chemotherapy.
[29] T. Holzer,et al. Global gene expression in Leishmania. , 2007, International journal for parasitology.
[30] Brian White,et al. Comparative genomic analysis of three Leishmania species that cause diverse human disease , 2007, Nature Genetics.
[31] J. Vermunt,et al. Assessing Performance of Orthology Detection Strategies Applied to Eukaryotic Genomes , 2007, PloS one.
[32] P. Myler,et al. Analysis of the Leishmania donovani transcriptome reveals an ordered progression of transient and permanent changes in gene expression during differentiation. , 2007, Molecular and biochemical parasitology.
[33] K. Leifso,et al. Genomic and proteomic expression analysis of Leishmania promastigote and amastigote life stages: the Leishmania genome is constitutively expressed. , 2007, Molecular and biochemical parasitology.
[34] S. Sundar,et al. Differential gene expression analysis in antimony-unresponsive Indian kala azar (visceral leishmaniasis) clinical isolates by DNA microarray , 2007, Parasitology.
[35] A. Descoteaux,et al. Leishmania donovani lipophosphoglycan blocks NADPH oxidase assembly at the phagosome membrane , 2006, Cellular microbiology.
[36] M. Ouellette,et al. A combined proteomic and transcriptomic approach to the study of stage differentiation in Leishmania infantum , 2006, Proteomics.
[37] Damian Fermin,et al. Novel gene and gene model detection using a whole genome open reading frame analysis in proteomics , 2006, Genome Biology.
[38] Timothy R Holzer,et al. Expression profiling by whole-genome interspecies microarray hybridization reveals differential gene expression in procyclic promastigotes, lesion-derived amastigotes, and axenic amastigotes in Leishmania mexicana. , 2006, Molecular and biochemical parasitology.
[39] S. Sundar,et al. Visceral leishmaniasis (kala-azar): challenges ahead. , 2006, The Indian journal of medical research.
[40] E. Koonin. Orthologs, Paralogs, and Evolutionary Genomics 1 , 2005 .
[41] Akhilesh Pandey,et al. Genome annotation of Anopheles gambiae using mass spectrometry-derived data , 2005, BMC Genomics.
[42] Heather J Munden,et al. The Genome of the Kinetoplastid Parasite, Leishmania major , 2005, Science.
[43] J. Donelson,et al. Regulation of genes encoding the major surface protease of Leishmania chagasi via mRNA stability. , 2005, Molecular and biochemical parasitology.
[44] M. Bergeron,et al. Characterization and developmental gene regulation of a large gene family encoding amastin surface proteins in Leishmania spp. , 2005, Molecular and biochemical parasitology.
[45] Clare L. Bennett,et al. A critical role for lipophosphoglycan in proinflammatory responses of dendritic cells to Leishmania mexicana , 2005, European journal of immunology.
[46] Erik L. L. Sonnhammer,et al. Inparanoid: a comprehensive database of eukaryotic orthologs , 2004, Nucleic Acids Res..
[47] E. Koonin. Orthologs, paralogs, and evolutionary genomics. , 2005, Annual review of genetics.
[48] Nichole L. King,et al. Integration with the human genome of peptide sequences obtained by high-throughput mass spectrometry , 2004, Genome Biology.
[49] J. Lukeš,et al. Genetic polymorphism within the leishmania donovani complex: correlation with geographic origin. , 2004, The American journal of tropical medicine and hygiene.
[50] Jacob D. Jaffe,et al. Proteogenomic mapping as a complementary method to perform genome annotation , 2004, Proteomics.
[51] R. Locksley,et al. Leishmania major LACK Antigen Is Required for Efficient Vertebrate Parasitization , 2003, The Journal of experimental medicine.
[52] J. Donelson,et al. The major surface protease (MSP or GP63) of Leishmania sp. Biosynthesis, regulation of expression, and function. , 2003, Molecular and biochemical parasitology.
[53] Neil Hall,et al. Analysis of the Plasmodium falciparum proteome by high-accuracy mass spectrometry , 2002, Nature.
[54] A. Descoteaux,et al. Functional aspects of the Leishmania donovani lipophosphoglycan during macrophage infection. , 2002, Microbes and infection.
[55] W. Blackstock,et al. Matching peptide mass spectra to EST and genomic DNA databases. , 2001, Trends in biotechnology.
[56] P. Mortensen,et al. Mass spectrometry allows direct identification of proteins in large genomes , 2001, Proteomics.
[57] M. Mann,et al. Use of mass spectrometry-derived data to annotate nucleotide and protein sequence databases. , 2001, Trends in biochemical sciences.
[58] M. Mann,et al. Proteomics to study genes and genomes , 2000, Nature.
[59] R. Locksley,et al. Susceptibility to infectious diseases: Leishmania as a paradigm. , 1999, The Journal of infectious diseases.
[60] P. Wincker,et al. Conserved linkage groups associated with large-scale chromosomal rearrangements between Old World and New World Leishmania genomes. , 1998, Gene.
[61] E. Schneider,et al. ATP-binding-cassette (ABC) transport systems: functional and structural aspects of the ATP-hydrolyzing subunits/domains. , 1998, FEMS microbiology reviews.
[62] L. Gedamu,et al. Molecular cloning, characterization and overexpression of two distinct cysteine protease cDNAs from Leishmania donovani chagasi. , 1997, Molecular and biochemical parasitology.
[63] J. Yates,et al. Mining genomes: correlating tandem mass spectra of modified and unmodified peptides to sequences in nucleotide databases. , 1995, Analytical chemistry.