An engineered mammalian band-pass network

Gene expression circuitries, which enable cells to detect precise levels within a morphogen concentration gradient, have a pivotal impact on biological processes such as embryonic pattern formation, paracrine and autocrine signalling, and cellular migration. We present the rational synthesis of a synthetic genetic circuit exhibiting band-pass detection characteristics. The components, involving multiply linked mammalian trans-activator and -repressor control systems, were selected and fine-tuned to enable the detection of ‘low-threshold’ morphogen (tetracycline) concentrations, in which target gene expression was triggered, and a ‘high-threshold’ concentration, in which expression was muted. In silico predictions and supporting experimental findings indicated that the key criterion for functional band-pass detection was the matching of componentry that enabled sufficient separation of the low and high threshold points. Using the circuitry together with a fluorescence-encoded target gene, mammalian cells were genetically engineered to be capable of forming a band-like pattern of differentiation in response to a tetracycline chemical gradient. Synthetic gene networks designed to emulate naturally occurring gene behaviours provide not only insight into biological processes, but may also foster progress in future tissue engineering, gene therapy and biosensing applications.

[1]  David K. Karig,et al.  Signal-amplifying genetic circuit enables in vivo observation of weak promoter activation in the Rhl quorum sensing system. , 2005, Biotechnology and bioengineering.

[2]  Jeff Hasty,et al.  Engineered gene circuits , 2002, Nature.

[3]  S. Basu,et al.  A synthetic multicellular system for programmed pattern formation , 2005, Nature.

[4]  A. Ninfa,et al.  Development of Genetic Circuitry Exhibiting Toggle Switch or Oscillatory Behavior in Escherichia coli , 2003, Cell.

[5]  C. Nüsslein-Volhard,et al.  The bicoid protein determines position in the Drosophila embryo in a concentration-dependent manner , 1988, Cell.

[6]  Arthur D Lander,et al.  Morpheus Unbound: Reimagining the Morphogen Gradient , 2007, Cell.

[7]  Ron Weiss,et al.  Engineering signal processing in cells: Towards molecular concentration band detection , 2002, Natural Computing.

[8]  C. Wright,et al.  Handbook of biomaterials evaluation: Scientific, technical, and clinical testing of implant materials , 1987 .

[9]  Martin Fussenegger,et al.  BioLogic gates enable logical transcription control in mammalian cells , 2004, Biotechnology and bioengineering.

[10]  B. Cullen,et al.  Secreted placental alkaline phosphatase: a powerful new quantitative indicator of gene expression in eukaryotic cells. , 1988, Gene.

[11]  H. Blau,et al.  Transcriptional control: rheostat converted to on/off switch. , 2000, Molecular cell.

[12]  Martin Fussenegger,et al.  Hysteresis in a synthetic mammalian gene network. , 2005, Proceedings of the National Academy of Sciences of the United States of America.

[13]  M. Fussenegger,et al.  An engineered epigenetic transgene switch in mammalian cells , 2004, Nature Biotechnology.

[14]  K. Anderson,et al.  decapentaplegic acts as a morphogen to organize dorsal-ventral pattern in the Drosophila embryo , 1992, Cell.

[15]  M. Fussenegger,et al.  A novel cytostatic process enhances the productivity of Chinese hamster ovary cells. , 1997, Biotechnology and bioengineering.

[16]  A. F. Recum Handbook of biomaterials evaluation: Scientific, technical, and clinical testing of implant materials , 1986 .

[17]  Martin Fussenegger,et al.  Intronically encoded siRNAs improve dynamic range of mammalian gene regulation systems and toggle switch , 2008, Nucleic acids research.

[18]  Martin Fussenegger,et al.  Pharmacologic transgene control systems for gene therapy , 2006, The journal of gene medicine.

[19]  Martin Fussenegger,et al.  A synthetic time-delay circuit in mammalian cells and mice , 2007, Proceedings of the National Academy of Sciences.

[20]  James Briscoe,et al.  The interpretation of morphogen gradients , 2006, Development.

[21]  Claudiu A. Giurumescu,et al.  Signal Processing during Developmental Multicellular Patterning , 2008, Biotechnology progress.

[22]  H. Meinhardt,et al.  Pattern formation by local self-activation and lateral inhibition. , 2000, BioEssays : news and reviews in molecular, cellular and developmental biology.

[23]  Martin Fussenegger,et al.  Toward construction of a self‐sustained clock‐like expression system based on the mammalian circadian clock , 2004, Biotechnology and bioengineering.

[24]  Johannes Jaeger,et al.  Regulative feedback in pattern formation: towards a general relativistic theory of positional information , 2008, Development.

[25]  L. Serrano,et al.  Engineering stability in gene networks by autoregulation , 2000, Nature.

[26]  Martin Fussenegger,et al.  Impact of RNA interference on gene networks. , 2006, Metabolic engineering.

[27]  G. Struhl,et al.  Direct and Long-Range Action of a DPP Morphogen Gradient , 1996, Cell.

[28]  R. Weiss,et al.  A universal RNAi-based logic evaluator that operates in mammalian cells , 2007, Nature Biotechnology.

[29]  M. Gossen,et al.  Tight control of gene expression in mammalian cells by tetracycline-responsive promoters. , 1992, Proceedings of the National Academy of Sciences of the United States of America.

[30]  M. Hoch,et al.  Cross regulation of intercellular gap junction communication and paracrine signaling pathways during organogenesis in Drosophila. , 2007, Developmental Biology.

[31]  L. Wolpert Positional information and the spatial pattern of cellular differentiation. , 1969, Journal of theoretical biology.

[32]  J E Bailey,et al.  Autoregulated Multicistronic Expression Vectors Provide One‐Step Cloning of Regulated Product Gene Expression in Mammalian Cells , 1997, Biotechnology progress.

[33]  Martin Fussenegger,et al.  SAMY, a novel mammalian reporter gene derived from Bacillus stearothermophilus α-amylase , 2002 .

[34]  Martin Fussenegger,et al.  A synthetic low-frequency mammalian oscillator , 2010, Nucleic acids research.

[35]  J. Stelling,et al.  A tunable synthetic mammalian oscillator , 2009, Nature.

[36]  S. Basu,et al.  Spatiotemporal control of gene expression with pulse-generating networks. , 2004, Proceedings of the National Academy of Sciences of the United States of America.

[37]  David H. Sharp,et al.  Dynamic control of positional information in the early Drosophila embryo , 2004, Nature.

[38]  M. Fussenegger,et al.  An Update of pTRIDENT Multicistronic Expression Vectors: pTRIDENTS Containing Novel Streptogramin‐Responsive Promoters , 2000, Biotechnology progress.

[39]  M. Fussenegger,et al.  Versatile macrolide-responsive mammalian expression vectors for multiregulated multigene metabolic engineering. , 2002, Biotechnology and bioengineering.

[40]  J. Collins,et al.  Construction of a genetic toggle switch in Escherichia coli , 2000, Nature.

[41]  M. Elowitz,et al.  A synthetic oscillatory network of transcriptional regulators , 2000, Nature.

[42]  M. Fussenegger,et al.  Macrolide-based transgene control in mammalian cells and mice , 2002, Nature Biotechnology.

[43]  Martin Fussenegger,et al.  SAMY, a novel mammalian reporter gene derived from Bacillus stearothermophilus alpha-amylase. , 2002, Gene.

[44]  Martin Fussenegger,et al.  A genetic time‐delay circuitry in mammalian cells , 2007, Biotechnology and bioengineering.

[45]  M. Fussenegger,et al.  Streptogramin-based gene regulation systems for mammalian cells , 2000, Nature Biotechnology.

[46]  M. Fussenegger,et al.  Multi-gene engineering: simultaneous expression and knockdown of six genes off a single platform. , 2007, Biotechnology and bioengineering.