Stratification of pseudoprogression and true progression of glioblastoma multiform based on longitudinal diffusion tensor imaging without segmentation

Purpose: Pseudoprogression (PsP) can mimic true tumor progression (TTP) on magnetic resonance imaging in patients with glioblastoma multiform (GBM). The phenotypical similarity between PsP and TTP makes it a challenging task for physicians to distinguish these entities. So far, no approved biomarkers or computer-aided diagnosis systems have been used clinically for this purpose. Methods: To address this challenge, the authors developed an objective classification system for PsP and TTP based on longitudinal diffusion tensor imaging. A novel spatio-temporal discriminative dictionary learning scheme was proposed to differentiate PsP and TTP, thereby avoiding segmentation of the region of interest. The authors constructed a novel discriminative sparse matrix with the classification-oriented dictionary learning approach by excluding the shared features of two categories, so that the pooled features captured the subtle difference between PsP and TTP. The most discriminating features were then identified from the pooled features by their feature scoring system. Finally, the authors stratified patients with GBM into PsP and TTP by a support vector machine approach. Tenfold cross-validation (CV) and the area under the receiver operating characteristic (AUC) were used to assess the robustness of the developed system. Results: The average accuracy and AUC values after ten rounds of tenfold CV were 0.867 and 0.92, respectively. The authors also assessed the effects of different methods and factors (such as data types, pooling techniques, and dimensionality reduction approaches) on the performance of their classification system which obtained the best performance. Conclusions: The proposed objective classification system without segmentation achieved a desirable and reliable performance in differentiating PsP from TTP. Thus, the developed approach is expected to advance the clinical research and diagnosis of PsP and TTP.

[1]  Donghui Wang,et al.  A classification-oriented dictionary learning model: Explicitly learning the particularity and commonality across categories , 2014, Pattern Recognit..

[2]  D. Kong,et al.  Diagnostic Dilemma of Pseudoprogression in the Treatment of Newly Diagnosed Glioblastomas: The Role of Assessing Relative Cerebral Blood Flow Volume and Oxygen-6-Methylguanine-DNA Methyltransferase Promoter Methylation Status , 2011, American Journal of Neuroradiology.

[3]  Tracy T Batchelor,et al.  Low incidence of pseudoprogression by imaging in newly diagnosed glioblastoma patients treated with cediranib in combination with chemoradiation. , 2013, The oncologist.

[4]  Corinna Cortes,et al.  Support-Vector Networks , 1995, Machine Learning.

[5]  P. Wen,et al.  Effect of adding temozolomide to radiation therapy on the incidence of pseudo-progression , 2009, Journal of Neuro-Oncology.

[6]  Baoxin Li,et al.  Discriminative K-SVD for dictionary learning in face recognition , 2010, 2010 IEEE Computer Society Conference on Computer Vision and Pattern Recognition.

[7]  M. Mehta,et al.  Pseudoprogression after glioma therapy: a comprehensive review , 2013, Expert review of neurotherapeutics.

[8]  Kiyohiro Houkin,et al.  IDH1 mutation as a potential novel biomarker for distinguishing pseudoprogression from true progression in patients with glioblastoma treated with temozolomide and radiotherapy , 2013, Brain Tumor Pathology.

[9]  Guillermo Sapiro,et al.  Online dictionary learning for sparse coding , 2009, ICML '09.

[10]  Timothy D Johnson,et al.  Parametric response map as an imaging biomarker to distinguish progression from pseudoprogression in high-grade glioma. , 2010, Journal of clinical oncology : official journal of the American Society of Clinical Oncology.

[11]  David Zhang,et al.  Sparse Representation Based Fisher Discrimination Dictionary Learning for Image Classification , 2014, International Journal of Computer Vision.

[12]  M. Elad,et al.  $rm K$-SVD: An Algorithm for Designing Overcomplete Dictionaries for Sparse Representation , 2006, IEEE Transactions on Signal Processing.

[13]  Gözde B. Ünal,et al.  Tumor-Cut: Segmentation of Brain Tumors on Contrast Enhanced MR Images for Radiosurgery Applications , 2012, IEEE Transactions on Medical Imaging.

[14]  C. Suh,et al.  Prediction of Pseudoprogression in Patients with Glioblastomas Using the Initial and Final Area Under the Curves Ratio Derived from Dynamic Contrast-Enhanced T1-Weighted Perfusion MR Imaging , 2013, American Journal of Neuroradiology.

[15]  Mark W. Woolrich,et al.  FSL , 2012, NeuroImage.

[16]  S. Leenstra,et al.  Recent advances in the molecular understanding of glioblastoma , 2009 .

[17]  Cordelia Schmid,et al.  Beyond Bags of Features: Spatial Pyramid Matching for Recognizing Natural Scene Categories , 2006, 2006 IEEE Computer Society Conference on Computer Vision and Pattern Recognition (CVPR'06).

[18]  Michael W. Spratling,et al.  Image Segmentation Using a Sparse Coding Model of Cortical Area V 1 , 2013 .

[19]  Michael W. Spratling Image Segmentation Using a Sparse Coding Model of Cortical Area V1 , 2013, IEEE Transactions on Image Processing.

[20]  Dieta Brandsma,et al.  Incidence of early pseudo‐progression in a cohort of malignant glioma patients treated with chemoirradiation with temozolomide , 2008, Cancer.

[21]  S T Roweis,et al.  Nonlinear dimensionality reduction by locally linear embedding. , 2000, Science.

[22]  Namkug Kim,et al.  Which combination of MR imaging modalities is best for predicting recurrent glioblastoma? Study of diagnostic accuracy and reproducibility. , 2014, Radiology.

[23]  Tae Min Kim,et al.  Usefulness of MS-MLPA for detection of MGMT promoter methylation in the evaluation of pseudoprogression in glioblastoma patients. , 2011, Neuro-oncology.

[24]  O. De Witte,et al.  High levels of cellular proliferation predict pseudoprogression in glioblastoma patients , 2011, International journal of oncology.

[25]  Chih-Jen Lin,et al.  LIBSVM: A library for support vector machines , 2011, TIST.

[26]  A. Brandes,et al.  MGMT promoter methylation status can predict the incidence and outcome of pseudoprogression after concomitant radiochemotherapy in newly diagnosed glioblastoma patients. , 2008, Journal of clinical oncology : official journal of the American Society of Clinical Oncology.

[27]  E. W. Shrigley Medical Physics , 1944, British medical journal.

[28]  Michael Elad,et al.  Image Denoising Via Sparse and Redundant Representations Over Learned Dictionaries , 2006, IEEE Transactions on Image Processing.

[29]  Bin Li,et al.  CORN: Correlation-driven nonparametric learning approach for portfolio selection , 2011, TIST.

[30]  Kyung K. Peck,et al.  Dynamic contrast enhanced T1 MRI perfusion differentiates pseudoprogression from recurrent glioblastoma , 2015, Journal of Neuro-Oncology.

[31]  Larry S. Davis,et al.  Label Consistent K-SVD: Learning a Discriminative Dictionary for Recognition , 2013, IEEE Transactions on Pattern Analysis and Machine Intelligence.

[32]  Yihong Gong,et al.  Linear spatial pyramid matching using sparse coding for image classification , 2009, 2009 IEEE Conference on Computer Vision and Pattern Recognition.

[33]  S. Brem,et al.  Differentiating Tumor Progression from Pseudoprogression in Patients with Glioblastomas Using Diffusion Tensor Imaging and Dynamic Susceptibility Contrast MRI , 2015, American Journal of Neuroradiology.

[34]  Daniel Rueckert,et al.  Segmentation of MR images via discriminative dictionary learning and sparse coding: Application to hippocampus labeling , 2013, NeuroImage.

[35]  M. Markey,et al.  Differentiating tumor recurrence from treatment necrosis: a review of neuro-oncologic imaging strategies. , 2013, Neuro-oncology.

[36]  Tae Min Kim,et al.  Differentiation of true progression from pseudoprogression in glioblastoma treated with radiation therapy and concomitant temozolomide: comparison study of standard and high-b-value diffusion-weighted imaging. , 2013, Radiology.

[37]  Hyun-Cheol Kang,et al.  Pseudoprogression in patients with malignant gliomas treated with concurrent temozolomide and radiotherapy: potential role of p53 , 2011, Journal of Neuro-Oncology.

[38]  Kwok-Wo Wong,et al.  Error detection in arithmetic coding with artificial markers , 2011, Comput. Math. Appl..

[39]  Xiaobo Zhou,et al.  A novel missense-mutation-related feature extraction scheme for 'driver' mutation identification , 2012, Bioinform..

[40]  Yanjie Zhu,et al.  Differentiation of true-progression from pseudoprogression in glioblastoma treated with radiation therapy and concomitant temozolomide by GLCM texture analysis of conventional MRI. , 2015, Clinical imaging.

[41]  Gelareh Zadeh,et al.  The Diagnosis and Treatment of Pseudoprogression, Radiation Necrosis and Brain Tumor Recurrence , 2014, International journal of molecular sciences.

[42]  Kwok-Wo Wong,et al.  An enhanced variable-length arithmetic coding and encryption scheme using chaotic maps , 2013, J. Syst. Softw..

[43]  Allen Y. Yang,et al.  Robust Face Recognition via Sparse Representation , 2009, IEEE Transactions on Pattern Analysis and Machine Intelligence.

[44]  A. Bruckstein,et al.  K-SVD : An Algorithm for Designing of Overcomplete Dictionaries for Sparse Representation , 2005 .

[45]  Xiahai Zhuang,et al.  Objective classification system for sagittal craniosynostosis based on suture segmentation. , 2015, Medical physics.

[46]  Guillermo Sapiro,et al.  Classification and clustering via dictionary learning with structured incoherence and shared features , 2010, 2010 IEEE Computer Society Conference on Computer Vision and Pattern Recognition.

[47]  Donghui Wang,et al.  A Dictionary Learning Approach for Classification: Separating the Particularity and the Commonality , 2012, ECCV.

[48]  Christos Davatzikos,et al.  GLISTR: Glioma Image Segmentation and Registration , 2012, IEEE Transactions on Medical Imaging.

[49]  Guillermo Sapiro,et al.  Online Learning for Matrix Factorization and Sparse Coding , 2009, J. Mach. Learn. Res..

[50]  S. Kim,et al.  Differentiation of Tumor Progression from Pseudoprogression in Patients with Posttreatment Glioblastoma Using Multiparametric Histogram Analysis , 2014, American Journal of Neuroradiology.

[51]  Gang Wang,et al.  Exemplar based Deep Discriminative and Shareable Feature Learning for scene image classification , 2015, Pattern Recognit..