The Mathematical Analysis of Biological Aggregation and Dispersal: Progress, Problems and Perspectives
暂无分享,去创建一个
[1] H. Othmer,et al. A “Trimer of Dimers”—Based Model for the Chemotactic Signal Transduction Network in Bacterial Chemotaxis , 2012, Bulletin of Mathematical Biology.
[2] N. Kampen,et al. Stochastic processes in physics and chemistry , 1981 .
[3] C. Patlak. Random walk with persistence and external bias , 1953 .
[4] W. Alt. Biased random walk models for chemotaxis and related diffusion approximations , 1980, Journal of mathematical biology.
[5] M. Alber,et al. Periodic reversal of direction allows Myxobacteria to swarm , 2009, Proceedings of the National Academy of Sciences.
[6] Hans G. Othmer,et al. Aggregation, Blowup, and Collapse: The ABC's of Taxis in Reinforced Random Walks , 1997, SIAM J. Appl. Math..
[7] J. D.,et al. A Continuum Analysis of the Chemotactic Signal Seen by Dictyostelium discoideum , 1998 .
[8] Max Born,et al. A general kinetic theory of liquids I. The molecular distribution functions , 1946, Proceedings of the Royal Society of London. Series A. Mathematical and Physical Sciences.
[9] Edward A. Codling,et al. Random walk models in biology , 2008, Journal of The Royal Society Interface.
[10] J. D. E. Koshland. Bacterial chemotaxis as a model behavioral system , 1980 .
[11] A. M. Edwards,et al. Revisiting Lévy flight search patterns of wandering albatrosses, bumblebees and deer , 2007, Nature.
[12] Hans G. Othmer,et al. The Diffusion Limit of Transport Equations II: Chemotaxis Equations , 2002, SIAM J. Appl. Math..
[13] B. Perthame. Mathematical tools for kinetic equations , 2004 .
[14] Carlo Cercignani,et al. Mathematical Methods in Kinetic Theory , 1970 .
[15] Iztok Lebar Bajec,et al. Organized flight in birds , 2009, Animal Behaviour.
[16] P. Tarazona,et al. Nonequilibrium inertial dynamics of colloidal systems. , 2006, The Journal of chemical physics.
[17] W. T. Grandy,et al. Kinetic theory : classical, quantum, and relativistic descriptions , 2003 .
[18] 佐藤 健一. Lévy processes and infinitely divisible distributions , 2013 .
[19] Wang Qiu-Dong,et al. The global solution of the N-body problem , 1990 .
[20] David M. Umulis,et al. The Intersection of Theory and Application in Elucidating Pattern Formation in Developmental Biology. , 2009, Mathematical modelling of natural phenomena.
[21] G. Papanicolaou. Asymptotic analysis of transport processes , 1975 .
[22] E. C. Titchmarsh,et al. The Laplace Transform , 1991, Heat Transfer 1.
[23] Karl Oelschläger,et al. A fluctuation theorem for moderately interacting diffusion processes , 1987 .
[24] B. Perthame,et al. Mathematik in den Naturwissenschaften Leipzig An Integro-Differential Equation Model for Alignment and Orientational Aggregation , 2007 .
[25] C. Geiss,et al. An introduction to probability theory , 2008 .
[26] Rayleigh. The Problem of the Random Walk , 1905, Nature.
[27] Samuel Karlin,et al. A First Course on Stochastic Processes , 1968 .
[28] E. Tadmor,et al. From particle to kinetic and hydrodynamic descriptions of flocking , 2008, 0806.2182.
[29] G. Weiss. Aspects and Applications of the Random Walk , 1994 .
[30] L. E. Scriven,et al. Interactions of reaction and diffusion in open systems , 1969 .
[31] Lorenzo Pareschi,et al. Mathematical Modeling of Collective Behavior in Socio-Economic and Life Sciences , 2010 .
[32] K. Painter,et al. A User's Guide to Pde Models for Chemotaxis , 2022 .
[33] G. Wilemski. On the derivation of Smoluchowski equations with corrections in the classical theory of Brownian motion , 1976 .
[34] Philip K. Maini,et al. Cellular pattern formation during Dictyostelium aggregation , 1995 .
[35] Massimo Franceschetti,et al. When a Random Walk of Fixed Length can Lead Uniformly Anywhere Inside a Hypersphere , 2007 .
[36] J. R. Philip. Diffusion by Continuous Movements , 1968 .
[37] John William Strutt,et al. Scientific Papers: On the Resultant of a large number of Vibrations of the same Pitch and of arbitrary Phase , 2009 .
[38] Liang Li,et al. Persistent Cell Motion in the Absence of External Signals: A Search Strategy for Eukaryotic Cells , 2008, PloS one.
[39] Lord Rayleigh F.R.S.. XII. On the resultant of a large number of vibrations of the same pitch and of arbitrary phase , 1880 .
[40] Daniel W. Stroock,et al. Some stochastic processes which arise from a model of the motion of a bacterium , 1974 .
[41] J. O. Irwin,et al. The Frequency Distribution of the Difference between Two Independent Variates Following the Same Poisson Distribution , 1937 .
[42] Michael J Shelley,et al. Stability of active suspensions. , 2010, Physical review. E, Statistical, nonlinear, and soft matter physics.
[43] A survey of random processes with reinforcement , 2007, math/0610076.
[44] D. Morale,et al. Asymptotic Behavior of a System of Stochastic Particles Subject to Nonlocal Interactions , 2009 .
[45] M. N. Barber,et al. Random and restricted walks : theory and applications , 1970 .
[46] J. Kingman. A FIRST COURSE IN STOCHASTIC PROCESSES , 1967 .
[47] R. Firtel,et al. Signaling pathways controlling cell polarity and chemotaxis. , 2001, Trends in biochemical sciences.
[48] 明 大久保,et al. Diffusion and ecological problems : mathematical models , 1980 .
[49] A. Einstein. Über die von der molekularkinetischen Theorie der Wärme geforderte Bewegung von in ruhenden Flüssigkeiten suspendierten Teilchen [AdP 17, 549 (1905)] , 2005, Annalen der Physik.
[50] Keith R. Yamamoto,et al. Biological Regulation and Development , 1982, Springer US.
[51] R. Hall. Many-particle systems , 1972 .
[52] J. Spatz,et al. Adaptive force transmission in amoeboid cell migration , 2009, Nature Cell Biology.
[53] J. Dobnikar,et al. E. coli superdiffusion and chemotaxis-search strategy, precision, and motility. , 2009, Biophysical journal.
[54] J. Ross,et al. A model of excitation and adaptation in bacterial chemotaxis. , 1995, Biophysical journal.
[55] Ken-iti Sato. Lévy Processes and Infinitely Divisible Distributions , 1999 .
[56] Chuan Xue. Mathematical models of taxis-driven bacterial pattern formation , 2008 .
[57] B. Davis,et al. Reinforced random walk , 1990 .
[58] T. Passot,et al. Hydrodynamics of bacterial colonies: a model. , 2003, Physical review. E, Statistical, nonlinear, and soft matter physics.
[59] W. Ebeling. Stochastic Processes in Physics and Chemistry , 1995 .
[60] Max Born,et al. A general kinetic theory of liquids , 1949 .
[61] R. Fildes. Journal of the Royal Statistical Society (B): Gary K. Grunwald, Adrian E. Raftery and Peter Guttorp, 1993, “Time series of continuous proportions”, 55, 103–116.☆ , 1993 .
[62] Radek Erban,et al. From Signal Transduction to Spatial Pattern Formation in E. coli: A Paradigm for Multiscale Modeling in Biology , 2005 .
[63] Pierre Roux,et al. What makes cells move: requirements and obstacles for spontaneous cell motility. , 2010, Molecular bioSystems.
[64] L. Segel,et al. Initiation of slime mold aggregation viewed as an instability. , 1970, Journal of theoretical biology.
[65] V. M. Kenkre,et al. Generalized master equations for continuous-time random walks , 1973 .
[66] H. Othmer,et al. Models of dispersal in biological systems , 1988, Journal of mathematical biology.
[67] D. Williams. STOCHASTIC DIFFERENTIAL EQUATIONS: THEORY AND APPLICATIONS , 1976 .
[68] Dirk Horstmann,et al. F ¨ Ur Mathematik in Den Naturwissenschaften Leipzig from 1970 until Present: the Keller-segel Model in Chemotaxis and Its Consequences from 1970 until Present: the Keller-segel Model in Chemotaxis and Its Consequences , 2022 .
[69] J. Southgate,et al. Agent-based computational modeling of wounded epithelial cell monolayers , 2004, IEEE Transactions on NanoBioscience.
[70] J. Klafter,et al. The random walk's guide to anomalous diffusion: a fractional dynamics approach , 2000 .
[71] Massimo Fornasier,et al. Particle, kinetic, and hydrodynamic models of swarming , 2010 .
[72] R. Aris. Vectors, Tensors and the Basic Equations of Fluid Mechanics , 1962 .
[73] Radek Erban,et al. From Individual to Collective Behavior in Bacterial Chemotaxis , 2004, SIAM J. Appl. Math..
[74] R. Illner,et al. The mathematical theory of dilute gases , 1994 .
[75] D R Soll,et al. Frequency and orientation of pseudopod formation of Dictyostelium discoideum amebae chemotaxing in a spatial gradient: further evidence for a temporal mechanism. , 1987, Cell motility and the cytoskeleton.
[76] P. Maini,et al. Development and applications of a model for cellular response to multiple chemotactic cues , 2000, Journal of mathematical biology.
[77] E. Montroll. Random walks on lattices , 1969 .
[78] S. Chandrasekhar. Stochastic problems in Physics and Astronomy , 1943 .
[79] J. Douglas. Aspects and applications of the random walk , 1995 .
[80] S. Goldstein. ON DIFFUSION BY DISCONTINUOUS MOVEMENTS, AND ON THE TELEGRAPH EQUATION , 1951 .
[81] A. Czirók,et al. Collective Motion , 1999, physics/9902023.
[82] J. Hutchinson,et al. Use, misuse and extensions of “ideal gas” models of animal encounter , 2007, Biological reviews of the Cambridge Philosophical Society.
[83] D. Applebaum. Lévy Processes and Stochastic Calculus: Preface , 2009 .
[84] E. Montroll,et al. Random Walks on Lattices. II , 1965 .
[85] H. Othmer,et al. Taxis equations for amoeboid cells , 2006, Journal of mathematical biology.
[86] Mark Alber,et al. Macroscopic dynamics of biological cells interacting via chemotaxis and direct contact. , 2008, Physical review. E, Statistical, nonlinear, and soft matter physics.
[87] Piotr Garstecki,et al. Escherichia coli swim on the right-hand side , 2005, Nature.
[88] J. S. Parkinson,et al. A model of excitation and adaptation in bacterial chemotaxis. , 1997, Proceedings of the National Academy of Sciences of the United States of America.
[89] Chuan Xue,et al. Multiscale Models of Taxis-Driven Patterning in Bacterial Populations , 2009, SIAM J. Appl. Math..
[90] K. Painter,et al. Travelling Waves in Hyperbolic Chemotaxis Equations , 2011, Bulletin of mathematical biology.
[91] Felipe Cucker,et al. On the mathematical foundations of learning , 2001 .
[92] C. Parent,et al. A cell's sense of direction. , 1999, Science.
[93] R. Fürth,et al. Die Brownsche Bewegung bei Berücksichtigung einer Persistenz der Bewegungsrichtung. Mit Anwendungen auf die Bewegung lebender Infusorien , 1920 .
[94] H. Spohn. Large Scale Dynamics of Interacting Particles , 1991 .
[95] D. Lauffenburger,et al. A simple expression for quantifying bacterial chemotaxis using capillary assay data: application to the analysis of enhanced chemotactic responses from growth-limited cultures. , 1992, Mathematical biosciences.
[96] H. Othmer,et al. A theoretical analysis of filament length fluctuations in actin and other polymers , 2011, Journal of mathematical biology.
[97] H. Berg. Random Walks in Biology , 2018 .
[98] Chuan Xue,et al. Radial and Spiral Stream Formation in Proteus mirabilis Colonies , 2011, PLoS Comput. Biol..
[99] Vincenzo Capasso,et al. An Introduction to Continuous-Time Stochastic Processes: Theory, Models, and Applications to Finance, Biology, and Medicine , 2012 .
[100] Hans G. Othmer,et al. The Diffusion Limit of Transport Equations Derived from Velocity-Jump Processes , 2000, SIAM J. Appl. Math..
[101] H G Othmer,et al. Differentiation, cell sorting and proportion regulation in the slug stage of Dictyostelium discoideum. , 1986, Journal of theoretical biology.
[102] Hans G Othmer,et al. Multi-scale models of cell and tissue dynamics , 2009, Philosophical Transactions of the Royal Society A: Mathematical, Physical and Engineering Sciences.
[103] P. A. P. Moran,et al. An introduction to probability theory , 1968 .
[104] H. Berg,et al. Chemotaxis in Escherichia coli analysed by Three-dimensional Tracking , 1972, Nature.
[105] J. Galle,et al. From single cells to tissue architecture—a bottom-up approach to modelling the spatio-temporal organisation of complex multi-cellular systems , 2009, Journal of mathematical biology.
[106] M. Sixt,et al. Rapid leukocyte migration by integrin-independent flowing and squeezing , 2008, Nature.
[107] L. Bachelier,et al. Théorie de la spéculation , 1900 .
[108] Reinforced Random Walks. Reinforced Random Walks , 2022 .
[109] R. Macnab,et al. Sensing the Environment , 1980 .
[110] J. E. Moyal,et al. THE RANDOM WALK [IN CONTINUOUS TIME] AND ITS APPLICATION TO THE THEORY OF QUEUES , 1959 .
[111] Angela Stevens,et al. The Derivation of Chemotaxis Equations as Limit Dynamics of Moderately Interacting Stochastic Many-Particle Systems , 2000, SIAM J. Appl. Math..
[112] R L Hall,et al. Amoeboid movement as a correlated walk , 1977, Journal of mathematical biology.
[113] H. Othmer,et al. A model for individual and collective cell movement in Dictyostelium discoideum. , 2000, Proceedings of the National Academy of Sciences of the United States of America.
[114] Microscopic derivation of non-Markovian thermalization of a Brownian particle , 1996, cond-mat/9606078.