Ten quick tips for sharing open genomic data

As sequencing prices drop, genomic data accumulates-seemingly at a steadily increasing pace. Most genomic data potentially have value beyond the initial purpose-but only if shared with the scientific community. This, of course, is often easier said than done. Some of the challenges in sharing genomic data include data volume (raw file sizes and number of files), complexities, formats, nomenclatures, metadata descriptions, and the choice of a repository. In this paper, we describe 10 quick tips for sharing open genomic data.

[1]  angesichts der Corona-Pandemie,et al.  UPDATE , 1973, The Lancet.

[2]  Lex Nederbragt,et al.  Good enough practices in scientific computing , 2016, PLoS Comput. Biol..

[3]  Sean Khozin,et al.  Advantages of a Truly Open-Access Data-Sharing Model. , 2017, The New England journal of medicine.

[4]  M. Anusha,et al.  Big Data-Survey , 2016 .

[5]  Vanessa Sochat,et al.  Singularity: Scientific containers for mobility of compute , 2017, PloS one.

[6]  Varsha K. Khodiyar,et al.  10 Simple Rules for Sharing Human Genomic Data , 2016, bioRxiv.

[7]  Ian T. Foster,et al.  Jetstream: a self-provisioned, scalable science and engineering cloud environment , 2015, XSEDE.

[8]  Acmg Board of Directors,et al.  Laboratory and clinical genomic data sharing is crucial to improving genetic health care: a position statement of the American College of Medical Genetics and Genomics , 2017, Genetics in Medicine.

[9]  Federico Morán,et al.  Best practices in bioinformatics training for life scientists , 2013, Briefings Bioinform..

[10]  A. El-Osta,et al.  Gene name errors are widespread in the scientific literature , 2016, Genome Biology.

[11]  John Chilton,et al.  The Galaxy platform for accessible, reproducible and collaborative biomedical analyses: 2016 update , 2016, Nucleic Acids Res..

[12]  Nancy Wilkins-Diehr,et al.  XSEDE: Accelerating Scientific Discovery , 2014, Computing in Science & Engineering.

[13]  Nicholas P. Tatonetti,et al.  Ten Simple Rules to Enable Multi-site Collaborations through Data Sharing , 2017, PLoS Comput. Biol..

[14]  V. Marx.  Biology: The big challenges of big data , 2013, Nature.

[15]  Heather A. Piwowar,et al.  Data reuse and the open data citation advantage , 2013, PeerJ.

[16]  Yunhao Liu,et al.  Big Data: A Survey , 2014, Mob. Networks Appl..

[17]  Sahil R. Kalra,et al.  Big Challenges? Big Data … , 2015 .